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arXiv 2024年

作者： Guo, Xiao-Yu Li, Yi-Fan Liu, Yuan Pan, Xiaoyong Shen, Hong-Bin Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai200240 China

Protein design has become a critical method in advancing significant potential for various applications such as drug development and enzyme engineering. However, protein design methods utilizing large language models with solely pretraining and fine-tuning struggle to capture relationships in multi-modal protein data. To address this, we propose ProtDAT, a de novo fine-grained framework capable of designing proteins from any descriptive protein text input. ProtDAT builds upon the inherent characteristics of protein data to unify sequences and text as a cohesive whole rather than separate entities. It leverages an innovative multi-modal cross-attention, integrating protein sequences and textual information for a foundational level and seamless integration. Experimental results demonstrate that ProtDAT achieves the state-of-the-art performance in protein sequence generation, excelling in rationality, functionality, structural similarity, and validity. On 20,000 text-sequence pairs from Swiss-Prot, it improves pLDDT by 6%, TM-score by 0.26, and reduces RMSD by 1.2 Å, highlighting its potential to advance protein design. © 2024, CC BY-NC-SA.

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OCR4HSV: A Multi-task Learning Approach for Handwritten Signature Verification 27th

OCR4HSV: A Multi-task Learning Approach for Handwritten Sig...

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27th International Conference on pattern recognition, ICPR 2024

作者： Lin, Chao-Qun Wang, Da-Han Su, Yan-Fei Ge, De-Wu Zhang, Xu-Yao School of Computer and Information Engineering Xiamen University of Technology Xiamen361024 China Fujian Key Laboratory of Pattern Recognition and Image Understanding Xiamen361024 China Xiamen KEYTOP Communication Technology Co. Xiamen361024 China State Key Laboratory of Multimodal Artificial Intelligence Systems Institute of Automation of Chinese Academy of Sciences Beijing100190 China

ISBN: (纸本)9783031781186

Handwritten signature verification (HSV) models are notably recognized for their ability to discern whether a signature is forged in an offline document. Recently, HSV technology has made significant development. However, these methods have primarily focused on the shape features of the text image and overlooked the textual feature information inherent in the text itself, which makes the HSV model overfit. In this paper, we propose a novel network model named OCR4HSV to solve the above shortcomings. The proposed OCR4HSV first attempts to combine OCR and HSV to learn textual features in a multi-task learning manner. The model employs a dual-parameter approach, combining shared parameters and independent parameters. Specifically, Within the shared parameters, the Laplace attention module (LAM) is incorporated for edge information extraction. For independent parameters, CN-Mamba is utilized for sequence feature extraction in OCR, and the multi-scale global fusion block (MGFB) is designed to enhance the distinction between reference and test sample pairs. Leveraging OCR-related information and these architectural enhancements can fully mine the inherent textual feature information and significantly mitigate overfitting in the HSV task, thereby boosting verification accuracy. Our model has achieved state-of-the-art performance on the ChiSig and HanSig datasets. © The Author(s), under exclusive license to Springer Nature Switzerland AG 2025.

关键词： Multi-task learning

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Gait Planning and Motion Control Based on Vrep Simulation for Quadruped Robot 5

Gait Planning and Motion Control Based on Vrep Simulation fo...

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5th World Robot Conference Symposium on Advanced Robotics and Automation, WRC SARA 2023

作者： Zhou, Linqi Chen, Zhihua Liu, Jun Liu, Zhi Chen, Yumeng Zhang, Liting Nanchang Hangkong University Key Laboratory of Jiangxi Province for Image Processing and Pattern Recognition Moe Key Lab of Nondestructive Testing Technology Nanchang330063 China Beijing Institute of Technology State Key Laboratory of Intelligent Control and Decision of Complex Systems School of Automation Beijing100081 China

ISBN: (纸本)9798350307320

Gait planning of quadruped robots plays an important role in achieving less walking, including dynamic and static gait. In this article, a static and dynamic gait control method based on center of gravity stability margin is proposed. Firstly, the robot model and kinematics modeling are introduced. Secondly, the robot's foot static and dynamic gait were planned and the foot trajectory was designed. Finally, two types of gait of the robot were simulated using Vrep simulation software, and the differences in stability and speed between the coordinated gait with speed and stability in the static and dynamic gait of a 12 degree of freedom robot were analyzed, verifying the effectiveness of the gait control method proposed in this paper. © 2023 IEEE.

关键词： Robot programming

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Progressive Motion Context Refine Network for Efficient Video Frame Interpolation

arXiv

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arXiv 2022年

作者： Kong, Lingtong Liu, Jinfeng Yang, Jie The Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200240 China

Recently, flow-based frame interpolation methods have achieved great success by first modeling optical flow between target and input frames, and then building synthesis network for target frame generation. However, above cascaded architecture can lead to large model size and inference delay, hindering them from mobile and real-time applications. To solve this problem, we propose a novel Progressive Motion Context Refine Network (PMCRNet) to predict motion fields and image context jointly for higher efficiency. Different from others that directly synthesize target frame from deep feature, we explore to simplify frame interpolation task by borrowing existing texture from adjacent input frames, which means that decoder in each pyramid level of our PMCRNet only needs to update easier intermediate optical flow, occlusion merge mask and image residual. Moreover, we introduce a new annealed multi-scale reconstruction loss to better guide the learning process of this efficient PMCRNet. Experiments on multiple benchmarks show that proposed approaches not only achieve favorable quantitative and qualitative results but also reduces current model size and running time significantly. Copyright © 2022, The Authors. All rights reserved.

关键词： Optical flows

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Follicular Unit Registration Based on Binocular Stereo Vision for Hair Transplantation Surgery Robot

Follicular Unit Registration Based on Binocular Stereo Visio...

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Data Science and Information Technology (DSIT), International Conference on

作者： Weiduo Wang Jinfeng Liu Jie Yang Department of Automation Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China Institute of Medical Robotics Shanghai Jiao Tong University China

In this paper, we focus on the follicular unit registration problem for hair transplantation surgery robots based on binocular stereo vision system. The follicular units in both images are detected with YOLO V5 network. Because of the dull and similar pattern of the follicular units, previous regular methods which are pixel-based are reported with misalignment and poor accuracy. To solve this problem, we propose the context shape to describe the feature of the follicular unit. The distribution of units surrounding the target unit is estimated as the context shape. Then, Otsu’s method is used to segment hairs and Hungarian algorithm is used to match the hairs in the matched follicular unit. Then, the hairs are projected to 3D coordinate system and reconstructed. The experiments on the generated hair dataset demonstrate that the proposed method achieves both high accuracy and speed.

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A Branch-sensitive 3D Convolutional Neural Networks for Airway Segmentation

A Branch-sensitive 3D Convolutional Neural Networks for Airw...

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IEEE Advanced Information Management,Communicates,Electronic and Automation Control Conference (IMCEC)

作者： Yingjie Zhao Yusheng Liu Lisheng Wang Department of Automation Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

ISBN: (纸本)9781665479691

CT scans are an exceptional tool for quantitative airway analysis. Due to the complex voxel connectivity and branch structure of the airway, precise and fine segmentation results are difficult to accomplish. We propose a fully automated and end-to-end approach for airway segmentation and branch detection in chest CT based on U-Net architecture. We introduce the SE Normalization as a module for feature calibration and the hard region adaptation loss function based on cross entropy (HRA_CE) for dynamically maintaining class balance throughout the training period. We present a brand-new metric Branch DSC designed exclusively to assess the branch structure. We validate the suggested method on a dataset of 46 airway samples, and the experimental findings demonstrate that our proposed method significantly improves branch detection and segmentation continuity.

关键词： Training Measurement Three-dimensional displays Automation Computed tomography Atmospheric modeling Entropy

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Learning with Explicit Shape Priors for Medical image Segmentation

arXiv

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arXiv 2023年

作者： You, Xin He, Junjun Yang, Jie Gu, Yun The Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200240 China Shanghai AI Laboratory Shanghai200240 China

Medical image segmentation is a fundamental task for medical image analysis and surgical planning. In recent years, UNet-based networks have prevailed in the field of medical image segmentation. However, convolution-neural networks (CNNs) suffer from limited receptive fields, which fail to model the long-range dependency of organs or tumors. Besides, these models are heavily dependent on the training of the final segmentation head. And existing methods can not well address these two limitations at the same time. Hence, in our work, we proposed a novel shape prior module (SPM), which can explicitly introduce shape priors to promote the segmentation performance of UNet-based models. The explicit shape priors consist of global and local shape priors. The former with coarse shape representations provides networks with capabilities to model global contexts. The latter with finer shape information serves as additional guidance to boost the segmentation performance, which relieves the heavy dependence on the learnable prototype in the segmentation head. To evaluate the effectiveness of SPM, we conduct experiments on three challenging public datasets. And our proposed model achieves state-of-the-art performance. Furthermore, SPM shows an outstanding generalization ability on classic CNNs and recent Transformer-based backbones, which can serve as a plug- and-play structure for the segmentation task of different datasets. Source codes are available at https://***/AlexYouXin/Explicit-Shape-Priors Copyright © 2023, The Authors. All rights reserved.

关键词： image segmentation

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Achievement Degree Evaluation Method of Operating System Course Targets under the Background of Engineering Education Accreditation 3

Achievement Degree Evaluation Method of Operating System Cou...

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3rd IEEE International Conference on Computer Science and Educational Informatization, CSEI 2021

作者： Zhang, Fan Zhang, Xinhong Henan University School of Computer and Information Engineering Kaifeng China Institute of Image Processing and Pattern Recognition Henan University Kaifeng China

ISBN: (纸本)9781728184739

Engineering education accreditation emphasizes the cultivation of students' ability to solve complex engineering problems, including the cultivation of students' ability to analyze, design and develop solutions, research, application of modern tools and other qualities related to non-technical factors to solve complex engineering problems. Operating system course is the core course of computer science and technology major in colleges and universities. The understanding and mastery of operating system course directly affects students' computer professional level. In view of the new requirements of new engineering construction and engineering education accreditation for major curriculum construction and personnel training, as well as the current characteristics of software engineering and personnel training, this paper, based on the core concept of OBE and complex engineering problems of engineering education accreditation, evaluates the achievement of operating system curriculum requirements under the background of engineering education accreditation. This paper analyzes the effectiveness and puts forward a new method of major curriculum construction and evaluation to meet the requirements of new engineering construction and engineering education accreditation. © 2021 IEEE.

关键词： Engineering education

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Anatomy recognition in CT images of head and neck region via precision atlases

Anatomy recognition in CT images of head and neck region via...

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Medical Imaging 2021: image Processing

作者： Li, Jieyu Udupa, Jayaram K. Tong, Yubing Odhner, Dewey Torigian, Drew A. Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University China Medical Image Processing Group Department of Radiology University of Pennsylvania United States

ISBN: (纸本)9781510640214

Multi-atlas segmentation methods will benefit from atlases covering the complete spectrum of population patterns, while the difficulties in generating such large enough datasets and the computation burden required in the segmentation procedure reduce its practicality in clinical application. In this work, we start from a viewpoint that different parts of the target object can be recognized by different atlases and propose a precision atlas selection strategy. By comparing regional similarity between target image and atlases, precision atlases are ranked and selected by the frequency of regional best match, which have no need to be globally similar to the target subject at either image-level or object-level, largely increasing the implicit patterns contained in the atlas set. In the proposed anatomy recognition method, atlas building is first achieved by all-totemplate registration, where the minimum spanning tree (MST) strategy is used to select a registration template from a subset of radiologically near-normal images. Then, a two-stage recognition process is conducted: in rough recognition, sub-image level similarity is calculated between the test image and each image of the whole atlas set, and only the atlas with the highest similarity contributes to the recognition map regionally;in refined recognition, the atlases with the highest frequencies of best match are selected as the precision atlases and are utilized to further increase the accuracy of boundary matching. The proposed method is demonstrated on 298 computed tomography (CT) images and 9 organs in the Head and Neck (HN) body region. Experimental results illustrate that our method is effective for organs with different segmentation challenge and samples with different image quality, where remarkable improvement in boundary interpretation is made by refined recognition and most objects achieve a localization error within 2 voxels. © 2021 SPIE.

关键词： image enhancement

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Quantification of 3-Dimensional Confluence-Atrial Morphology in Supracardiac Total Anomalous Pulmonary Venous Connection

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JACC: Asia 2024年第8期4卷 594-606页

作者： Shi, Guocheng Huang, Meiping Pei, Yuchen Huang, Peng Wen, Chen Shentu, Jin Zhang, Hao Zhu, Zhongqun Zhong, Yumin Wang, Lisheng Chen, Huiwen Department of Cardiothoracic Surgery Congenital Heart Center Shanghai Children's Medical Center Shanghai Jiao Tong University School of Medicine Department of Catheterization Laboratory Guangdong Cardiovascular Institute Guangdong General Hospital Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University Department of Cardio-Thoracic Surgery Hunan Children's Hospital Changsha Department of Radiology Shanghai Children's Medical Center Shanghai Jiao Tong University School of Medicine

Background: Pulmonary vein stenosis (PVS) continues to be a major complication after surgical repair of total anomalous pulmonary venous connection (TAPVC). Recent studies suggest that the morphology of pulmonary venous confluence and the left atrium (LA) is associated with PVS. However, there are limited data on the prognostic value of integrating quantitative confluence-atrial morphology into risk stratification. Objectives: This study sought to evaluate the prognostic impact of novel imaging metrics derived from 3-dimensional (3D) computed tomography angiography (CTA) modeling on postsurgical PVS (PPVS) in the supracardiac TAPVC (sTAPVC) setting. Methods: Patients undergoing sTAPVC repair in 2017 to 2022 from 3 centers were retrospectively reviewed. Study investigators developed 3D CTA modeled geometric features to quantify confluence-atrial morphology that were analyzed with regard to PPVS. Results: Of the 162 patients (median age 61 days;55% having preoperative pulmonary venous obstruction [prePVO]) included, 47 (29%) with PPVS at a median of 1.5 months ([quartile 1-quartile 3: 1.5-3.0 months]). In the univariable analysis, the indexed total volume of the LA and confluence (iTVLC) and the ratio of the corresponding confluence length to the mean distance between the LA and confluence (CCL/mDBLC ratio) were significantly associated with PPVS. In a multivariable model adjusting for prePVO and age, the iTVLC and CCL/mDBLC ratio independently predicted PPVS (HR: 1.15;95% CI: 1.06-1.25;and HR: 1.20;95% CI: 1.08-1.35, respectively, all P < 0.01). Specifically, an iTVLC ≥20 cm³/m² and a CCL/mDBLC ratio ≥7.7 were significantly associated with a reduced risk of PPVS. Conclusions: Quantification of 3D confluence-atrial morphology appears to offer a deeper and better metric to predict PPVS in patients with sTAPVC. © 2024 The Authors

关键词： 3-dimensional computed tomography congenital heart disease pulmonary vein stenosis total anomalous pulmonary venous connection

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