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A sequential guiding network with attention for image captioning

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arXiv 2018年

作者： Sow, Daouda Qin, Zengchang Niasse, Mouhamed Wan, Tao Intelligent Computing and Machine Learning Lab School of ASEE Beihang University China Keep Labs Keep Inc. Beijing China School of EEE North China Electric Power University China

The recent advances of deep learning in both computer vision (CV) and natural language processing (NLP) provide us a new way of understanding semantics, by which we can deal with more challenging tasks such as automatic description generation from natural images. In this challenge, the encoder-decoder framework has achieved promising performance when a convolutional neural network (CNN) is used as image encoder and a recurrent neural network (RNN) as decoder. In this paper, we introduce a sequential guiding network that guides the decoder during word generation. The new model is an extension of the encoder-decoder framework with attention that has an additional guiding long short-term memory (LSTM) and can be trained in an end-to-end manner by using image/descriptions pairs. We validate our approach by conducting extensive experiments on a benchmark dataset, i.e., MS COCO Captions. The proposed model achieves significant improvement comparing to the other state-of-the-art deep learning models. Copyright © 2018, The Authors. All rights reserved.

关键词： Long short-term memory

Modeling Text with Graph Convolutional Network for Cross-Modal Information Retrieval

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arXiv 2018年

作者： Yu, Jing Lu, Yuhang Qin, Zengchang Liu, Yanbing Tan, Jianlong Guo, Li Zhang, Weifeng Institute of Information Engineering Chinese Academy of Sciences China School of Cyber Security University of Chinese Academy of Sciences China Intelligent Computing and Machine Learning Lab School of Asee Beihang University China Hangzhou Dianzi University China

Cross-modal information retrieval aims to find heterogeneous data of various modalities from a given query of one modality. The main challenge is to map different modalities into a common semantic space, in which distance between concepts in different modalities can be well modeled. For crossmodal information retrieval between images and texts, existing work mostly uses off-the-shelf Convolutional Neural Network (CNN) for image feature extraction. For texts, word-level features such as bag-of-words or word2vec are employed to build deep learning models to represent texts. Besides word-level semantics, the semantic relations between words are also informative but less explored. In this paper, we model texts by graphs using similarity measure based on word2vec. A dual-path neural network model is proposed for couple feature learning in cross-modal information retrieval. One path utilizes Graph Convolutional Network (GCN) for text modeling based on graph representations. The other path uses a neural network with layers of nonlinearities for image modeling based on off-the-shelf features. The model is trained by a pairwise similarity loss function to maximize the similarity of relevant text-image pairs and minimize the similarity of irrelevant pairs. Experimental results show that the proposed model outperforms the state-of-the-art methods significantly, with 17% improvement on accuracy for the best case. Copyright © 2018, The Authors. All rights reserved.

关键词： Information retrieval

Generative Cooperative Net for Image Generation and Data Augmentation 2018

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arXiv 2017年

作者： Xu, Qiangeng Qin, Zengchang Wan, Tao Intelligent Computing and Machine Learning Lab Beihang University Beijing China

How to build a good model for image generation given an abstract concept is a fundamental problem in computer vision. In this paper, we explore a generative model for the task of generating unseen images with desired features. We propose the Generative Cooperative Net (GCN) for image generation. The idea is similar to generative adversarial networks except that the generators and discriminators are trained to work accordingly. Our experiments on hand-written digit generation and facial expression generation show that GCN’s two cooperative counterparts (the generator and the classifier) can work together nicely and achieve promising results. We also discovered a usage of such generative model as an data-augmentation tool. Our experiment of applying this method on a recognition task shows that it is very effective comparing to other existing methods. It is easy to set up and could help generate a very large synthesized dataset. Copyright © 2017, The Authors. All rights reserved.

关键词： Generative adversarial networks

Stock volatility prediction using recurrent neural networks with sentiment analysis 30th

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Stock volatility prediction using recurrent neural networks ...

30th International Conference on Industrial, Engineering, and Other Applications of Applied intelligent Systems, IEA/AIE 2017

作者： Liu, Yifan Qin, Zengchang Li, Pengyu Wan, Tao Intelligent Computing and Machine Learning Lab School of ASEE Beihang University Beijing100191 China School of Mechanical Engineering and Automation Beihang University Beijing100191 China School of Biological Science and Medical Engineering Beihang University Beijing100191 China

ISBN: (纸本)9783319600413

In this paper, we propose a model to analyze sentiment of online stock forum and use the information to predict the stock volatility in the Chinese market. We have labeled the sentiment of the online financial posts and make the dataset public available for research. By generating a sentimental dictionary based on financial terms, we develop a model to compute the sentimental score of each online post related to a particular stock. Such sentimental information is represented by two sentiment indicators, which are fused to market data for stock volatility prediction by using the Recurrent Neural Networks (RNNs). Empirical study shows that, comparing to using RNN only, the model performs significantly better with sentimental indicators. © Springer International Publishing AG 2017.

关键词： Forecasting

A Bayesian model of game decomposition 30th

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A Bayesian model of game decomposition

30th International Conference on Industrial, Engineering, and Other Applications of Applied intelligent Systems, IEA/AIE 2017

作者： Zhao, Hanqing Qin, Zengchang Liu, Weijia Wan, Tao Intelligent Computing and Machine Learning Lab School of ASEE Beihang University Beijing100191 China École Centrale de Pékin Beihang University Beijing100191 China School of Biological Science and Medical Engineering Beihang University Beijing100191 China

ISBN: (纸本)9783319600413

In this paper, we propose a Bayesian probabilistic model to describe collective behavior generated by a finite number of agents competing for limited resources. In this model, the strategy for each agent is a binary choice in the Minority Game and it can be modeled by a Binomial distribution with a Beta prior. The strategy of an agent can be learned given a sequence of historical choices by using Bayesian inference. Aggregated micro-level choices constitute the observable time series data in macro-level, therefore, this can be regarded as a machine learning model for time series prediction. To verify the effectiveness of the new model, we conduct a series of experiments on artificial data and real-world stock price data. Experimental results demonstrate the new proposed model has a better performance comparing to a genetic algorithm based decomposition model. © Springer International Publishing AG 2017.

关键词： Genetic algorithms

Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence

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arXiv 2025年

作者： Sun, Yingying Jun, A. Liu, Zhiwei Sun, Rui Qian, Liujia Payne, Samuel H. Bittremieux, Wout Ralser, Markus Li, Chen Chen, Yi Dong, Zhen Perez-Riverol, Yasset Khan, Asif Sander, Chris Aebersold, Ruedi Vizcaíno, Juan Antonio Krieger, Jonathan R. Yao, Jianhua Wen, Han Zhang, Linfeng Zhu, Yunping Xuan, Yue Sun, Benjamin Boyang Qiao, Liang Hermjakob, Henning Tang, Haixu Gao, Huanhuan Deng, Yamin Zhong, Qing Chang, Cheng Bandeira, Nuno Li, Ming Weinan, E. Sun, Siqi Yang, Yuedong Omenn, Gilbert S. Zhang, Yue Xu, Ping Fu, Yan Liu, Xiaowen Overall, Christopher M. Wang, Yu Deutsch, Eric W. Chen, Luonan Cox, Jürgen Demichev, Vadim He, Fuchu Huang, Jiaxing Jin, Huilin Liu, Chao Li, Nan Luan, Zhongzhi Song, Jiangning Yu, Kaicheng Wan, Wanggen Wang, Tai Zhang, Kang Zhang, Le Bell, Peter A. Mann, Matthias Zhang, Bing Guo, Tiannan Affiliated Hangzhou First People’s Hospital State Key Laboratory of Medical Proteomics School of Medicine Westlake University Zhejiang Province Hangzhou China Westlake Center for Intelligent Proteomics Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Province Hangzhou China Biology Department Brigham Young University ProvoUT84602 United States Department of Computer Science University of Antwerp Antwerp2020 Belgium Department of Biochemistry CharitéUniversitätsmedizin Berlin Berlin Germany Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University MelbourneVICVIC 3800 Australia Wellcome Genome Campus Hinxton CambridgeCB10 1SD United Kingdom Harvard Medical School Ludwig Center at Harvard United States Harvard Medical School Broad Institute Ludwig Center at Harvard Dana-Farber Cancer Institute United States Department of Biology Institute of Molecular Systems Biology ETH Zürich Zürich Switzerland Bruker Ltd. MiltonONL9T 6P4 Canada AI for Life Sciences Lab Tencent Shenzhen518057 China State Key Laboratory of Medical Proteomics AI for Science Institute Beijing100080 China Beijing Institute of Lifeomics Beijing102206 China Thermo Fisher Scientific GmbH Hanna-Kunath Str. 11 Bremen28199 Germany Informatics and Predictive Sciences Research Bristol Myers Squibb United States Department of Chemistry Fudan University Songhu Road 2005 Shanghai200438 China Department of Computer Science Luddy School of Informatics Computing and Engineering Indiana University IN47408 United States ProCan® Children’s Medical Research Institute Faculty of Medicine and Health The University of Sydney WestmeadNSW Australia La Jolla CA United States Central China Institute of Artificial Intelligence University of Waterloo Canada AI for Science Institute Center for Machine Learning Research School of Mathematical Sciences Peking University China Research Institute of Intelligent Complex Systems Fudan U

Artificial intelligence (AI) is transforming scientific research, including proteomics. Advances in mass spectrometry (MS)-based proteomics data quality, diversity, and scale, combined with groundbreaking AI techniques, are unlocking new challenges and opportunities in biological discovery. Here, we highlight key areas where AI is driving innovation, from data analysis to new biological insights. These include developing an AI-friendly ecosystem for proteomics data generation, sharing, and analysis;improving peptide and protein identification and quantification;characterizing protein-protein interactions and protein complexes;advancing spatial and perturbation proteomics;integrating multi-omics data;and ultimately enabling AI-empowered virtual cells. © 2025, CC BY.

关键词： Biotic

Why is the Winner the Best?

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Why is the Winner the Best?

Conference on Computer Vision and Pattern Recognition (CVPR)

作者： M. Eisenmann A. Reinke V. Weru M. D. Tizabi F. Isensee T. J. Adler S. Ali V. Andrearczyk M. Aubreville U. Baid S. Bakas N. Balu S. Bano J. Bernal S. Bodenstedt A. Casella V. Cheplygina M. Daum M. De Bruijne A. Depeursinge R. Dorent J. Egger D. G. Ellis S. Engelhardt M. Ganz N. Ghatwary G. Girard P. Godau A. Gupta L. Hansen K. Harada M. Heinrich N. Heller A. Hering A. Huaulmé P. Jannin A. E. Kavur O. Kodym M. Kozubek J. Li H. Li J. Ma C. Martín-Isla B. Menze A. Noble V. Oreiller N. Padoy S. Pati K. Payette T. Rädsch J. Rafael-Patiño V. Singh Bawa S. Speidel C. H. Sudre K. Van Wijnen M. Wagner D. Wei A. Yamlahi M. H. Yap C. Yuan M. Zenk A. Zia D. Zimmerer D. Aydogan B. Bhattarai L. Bloch R. Brüngel J. Cho C. Choi Q. Dou I. Ezhov C. M. Friedrich C. Fuller R. R. Gaire A. Galdran Á. García Faura M. Grammatikopoulou S. Hong M. Jahanifar I. Jang A. Kadkhodamohammadi I. Kang F. Kofler S. Kondo H. Kuijf M. Li M. Luu T. Martinčič P. Morais M. A. Naser B. Oliveira D. Owen S. Pang J. Park S. Park S. Płotka E. Puybareau N. Rajpoot K. Ryu N. Saeed A. Shephard P. Shi D. Štepec R. Subedi G. Tochon H. R. Torres H. Urien J. L. Vilaça K. A. Wahid H. Wang J. Wang L. Wang X. Wang B. Wiestler M. Wodzinski F. Xia J. Xie Z. Xiong S. Yang Y. Yang Z. Zhao K. Maier-Hein P. F. Jäger A. Kopp-Schneider L. Maier-Hein Division of Intelligent Medical Systems German Cancer Research Center (DKFZ) Heidelberg Germany Helmholtz Imaging German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Division of Biostatistics German Cancer Research Center (DKFZ) Heidelberg Germany Division of Medical Image Computing German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Engineering and Physical Sciences School of Computing University of Leeds Leeds UK Institute of Informatics School of Management HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland Sierre Switzerland Department of Nuclear Medicine and Molecular Imaging Lausanne University Hospital Lausanne Switzerland Technische Hochschule Ingolstadt Ingolstadt Germany Center for Artificial Intelligence and Data Science for Integrated Diagnostics (AI2D) and Center for Biomedical Image Computing and Analytics (CBICA) University of Pennsylvania Philadelphia PA USA Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology University of Washington Seattle WA USA Department of Computer Science Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS) University College London London UK Universitat Autònoma de Barcelona & Computer Vision Center Barcelona Spain Division of Translational Surgical Oncology National Center for Tumor Diseases (NCT/UCC) Dresden Dresden Germany Department of Advanced Robotics Istituto Italiano di Tecnologia Italy Department of Electronics Information and Bioengineering Politecnico di Milano Milan Italy IT University of Copenhagen Copenhagen Denmark Department of General Visceral and Transplantation Surgery Heidelberg University Hospital Heidelberg Germany Department of Radiology and Nuc

International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do they really generate scientific progress? What are common and successful participation strategies? What makes a solution superior to a competing method? To address this gap in the literature, we performed a multicenter study with all 80 competitions that were conducted in the scope of IEEE ISBI 2021 and MICCAI 2021. Statistical analyses performed based on comprehensive descriptions of the submitted algorithms linked to their rank as well as the underlying participation strategies revealed common characteristics of winning solutions. These typically include the use of multi-task learning (63%) and/or multi-stage pipelines (61%), and a focus on augmentation (100%), image preprocessing (97%), data curation (79%), and post-processing (66%). The “typical” lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning. Two core general development strategies stood out for highly-ranked teams: the reflection of the metrics in the method design and the focus on analyzing and handling failure cases. According to the organizers, 43% of the winning algorithms exceeded the state of the art but only 11% completely solved the respective domain problem. The insights of our study could help researchers (1) improve algorithm development strategies when approaching new problems, and (2) focus on open research questions revealed by this work.

关键词：

Text generation based on generative adversarial nets with latent variable

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arXiv 2017年

作者： Wang, Heng Qin, Zengchang Wan, Tao Intelligent Computing and Machine Learning Lab School of ASEE Beihang University Beijing100191 China School of Biological Science and Medical Engineering Beihang University Beijing100191 China

In this paper, we propose a model using generative adver- sarial net (GAN) to generate realistic text. Instead of using standard GAN, we combine variational autoencoder (VAE) with generative ad- versarial net. The use of high-level latent random variables is helpful to learn the data distribution and solve the problem that generative adver- sarial net always emits the similar data. We propose the VGAN model where the generative model is composed of recurrent neural network and VAE. The discriminative model is a convolutional neural network. We train the model via policy gradient. We apply the proposed model to the task of text generation and compare it to other recent neural network based models, such as recurrent neural network language model and Seq- GAN. We evaluate the performance of the model by calculating negative log-likelihood and the BLEU score. We conduct experiments on three benchmark datasets, and results show that our model outperforms other previous models. Copyright © 2017, The Authors. All rights reserved.

关键词： Recurrent neural networks

Logical parsing from natural language based on a neural translation model

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arXiv 2017年

作者： Li, Liang Li, Pengyu Liu, Yifan Wan, Tao Qin, Zengchang Intelligent Computing and Machine Learning Lab School of ASEE Beihang University Beijing100191 China Biomedical Imaging and Informatics Lab School of Biological Science and Medical Engineering Beihang University Beijing100191 China

Semantic parsing has emerged as a significant and powerful paradigm for natural language interface and question answering systems. Traditional methods of building a semantic parser rely on high-quality lexicons, hand-crafted grammars and linguistic features which are limited by applied domain or representation. In this paper, we propose a general approach to learn from denotations based on Seq2Seq model augmented with attention mechanism. We encode input sequence into vectors and use dynamic programming to infer candidate logical forms. We utilize the fact that similar utterances should have similar logical forms to help reduce the searching space. Under our learning policy, the Seq2Seq model can learn mappings gradually with noises. Curriculum learning is adopted to make the learning smoother. We test our method on the arithmetic domain which shows our model can successfully infer the correct logical forms and learn the word meanings, compositionality and operation orders simultaneously. Copyright © 2017, The Authors. All rights reserved.

关键词： Dynamic programming