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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Wei, Shuoying Li, Songquan Guo, Yifei Zhu, Lida Wen, Xinlong Zhu, Rongbo College of Informatics Huazhong Agricultural University Wuhan430070 China Shenzhen Institute of Nutrition and Health Huazhong Agricultural University Shenzhen518000 China Shenzhen Branch Guangdong Laboratory for Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of Agriculture Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences Shenzhen518000 China Engineering Research Center of Intelligent Technology for Agriculture Ministry of Education Hubei Wuhan430074 China Key Laboratory of Ministry of Education for Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Hubei Wuhan430074 China

ISBN: (纸本)9798350337488

Obtaining accurate and effective information for drug molecules is a crucial and challenging task, which relies on high-quality chemical knowledge. However, chemical knowledge has been accumulated over the past 100 years from various regions, laboratories, and experimental purposes, which contains a lot of noise and inconsistency, leading to the out-of-distribution (OOD) problem. OOD may results in weak robustness and unsatisfied performance. In order to solve OOD learning problem with noise, a novel benchmark: ADMEOOD is proposed, which is a systematic OOD dataset curator and specifically designed for drug property prediction. ADMEOOD screens 27 Absorption, Distribution, Metabolism and Excretion (ADME) drug properties from Chembl and relevant literature. This paper explicitly make distinctions between two kinds of OOD data shifts: Noise Shift and Concept Conflict Drift (CCD). Overall, ADME contains 6 domain annotations combined with noise, CCD and no shifts, resulting in 18 different splits in total. ADMEOOD provides performance results on a variety of SOTA OOD models. The results demonstrate a significant difference performance between in-distribution and OOD data. Moreover, Empirical Risk Minimization and other models exhibit distinct trends in different domains and measurement types. The ADMEOOD benchmark can be accessed via https://***/qweasdzxc-wsy/ADMEOOD/. © 2023 IEEE.

关键词： ADME Benchmark Drug property prediction Out-of-distribution

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Adversarial attacks and defenses in physiological computing:a systematic review

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National Science Open 2023年第1期2卷 62-90页

作者： Dongrui Wu Jiaxin Xu Weili Fang Yi Zhang Liuqing Yang Xiaodong Xu Hanbin Luo Xiang Yu Ministry of Education Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and AutomationHuazhong University of Science and TechnologyWuhan 430074China Zhejiang Lab Hangzhou 311121China School of Civil and Hydraulic Engineering Huazhong University of Science and TechnologyWuhan 430074China College of Public Administration Huazhong University of Science and TechnologyWuhan 430074China Electrical Engineering and Computer Science Department University of MichiganAnn Arbor MI 48109USA School of Management and Sino-European Institute for Intellectual Property Huazhong University of Science and TechnologyWuhan 430074China

Physiological computing uses human physiological data as system inputs in real *** includes,or significantly overlaps with,brain-computer interfaces,affective computing,adaptive automation,health informatics,and physiological signal based *** computing increases the communication bandwidth from the user to the computer,but is also subject to various types of adversarial attacks,in which the attacker deliberately manipulates the training and/or test examples to hijack the machine learning algorithm output,leading to possible user confusion,frustration,injury,or even ***,the vulnerability of physiological computing systems has not been paid enough attention to,and there does not exist a comprehensive review on adversarial attacks to *** study fills this gap,by providing a systematic review on the main research areas of physiological computing,different types of adversarial attacks and their applications to physiological computing,and the corresponding defense *** hope this review will attract more research interests on the vulnerability of physiological computing systems,and more importantly,defense strategies to make them more secure.

关键词： physiological computing brain-computer interfaces health informatics biometrics machine learning adversarial attack

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Research on the detection method of alignment beacon based on the spatial structure feature of train bogies

Research on the detection method of alignment beacon based o...

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2022 Chinese Automation Congress, CAC 2022

作者： Cao, Chong Wan, Shaowei Peng, Gang He, Dingxin Zhong, Sheng Deng, Zhang Guo, Wentao School of Artificial Intelligence and Automation Huazhong University of Science and Technology Key Laboratory of Image Processing and Intelligent Control Ministry of Education Wuhan430074 China Beijing Railway Institute of Mechanical & Electrical Engineering Group Co. Ltd. Beijing100071 China Wuhan Lisai Technology Co. Ltd. Wuhan430073 China

ISBN: (纸本)9781665465335

The high-speed train inspection robot needs to perform alignment parking and image acquisition at the position of the train bogie, and reliable alignment identification marks are the basis for the inspection robot to achieve highprecision alignment parking. The existing alignment method is mainly based on the way of artificial beacons, in the inspection workshop through manual laying of additional identification marks such as QR codes, magnetic stripes, RFID electronic tags, auxiliary robot alignment parking, but this type of method in beacon maintenance, laying costs and other aspects have certain limitations. Aiming at the problem, this paper proposes a vision-based bogie beacon detection method, which combines the target detection technology with the unique bogie spatial structure feature of the train, and provides reliable identification marks for the alignment and parking of the inspection robot. This method improves the alignment accuracy, reduces the cost of laying and maintaining artificial beacons, and has high application value. © 2022 IEEE.

关键词： Railroads

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A Visual Kinematics Calibration Method for Manipulator Based on Nonlinear Optimization

A Visual Kinematics Calibration Method for Manipulator Based...

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2022 Chinese Automation Congress, CAC 2022

作者： Peng, Gang Wang, Zhihao Guan, Shangbin Deng, Zhang Guo, Wentao Key Laboratory of Image Processing and Intelligent Control Ministry of Education Wuhan China School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China Beijing Railway Institute of Mechanical & Electrical Engineering Group Co. Ltd. Beijing China Wuhan Lisai Technology Co. Ltd. Wuhan China

ISBN: (纸本)9781665465335

The traditional kinematic calibration method for manipulators requires precise three-dimensional measuring instruments to measure the end pose, which is not only expensive due to the high cost of the measuring instruments but also not applicable to all manipulators. Another calibration method uses a camera, but the system error caused by the camera's parameters affects the calibration accuracy of the kinematics of the robot arm. In order to solve this problem, this paper reduces the dimensionality of the experimental data and redesigns the objective function to be optimized. That is, the three-dimensional positions of the feature points of the calibration plate under each manipulator attitude corresponding to the actual kinematic model and the classic D-H kinematic model are mapped into the pixel coordinate system, and the sum of Euclidean distance errors of the pixel coordinates of the two is used as the objective function to be optimized. And then, nonlinear optimization and parameter compensation are performed. The experimental results show that the pixel deviation of the end pose corresponding to the optimized D-H kinematic model proposed in this paper and the end pose corresponding to the actual kinematic model in the pixel coordinate system is 0.99 pixels. Compared with the 7.9 deviation pixels between the pixel coordinates calculated by the classic D-H kinematic model and the actual pixel coordinates, the deviation is reduced by nearly 7 pixels for an 87% reduction in error. Therefore, the proposed method can effectively avoid system errors caused by camera parameters in visual calibration, can improve the absolute positioning accuracy of the end of the robotic arm, and has good economy and universality. © 2022 IEEE.

关键词： Pixels

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Air Pollution Monitoring By Integrating Local and Global Information in Self-Adaptive Multiscale Transform Domain

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IEEE Transactions on Multimedia 2025年

作者： Gu, Ke Liu, Yuchen Liu, Hongyan Liu, Bo Qiao, Junfei Lin, Weisi Zhang, Wenjun Beijing University of Technology School of Information Science and Technology Engineering Research Center of Intelligent Perception and Autonomous Control of Ministry of Education Beijing Laboratory of Smart Environmental Protection Beijing Key Laboratory of Computational Intelligence and Intelligent System Beijing Artificial Intelligence Institute Beijing100124 China Massey University School of Mathematical and Computational Sciences New Zealand Nanyang Technological University College of Computing and Data Science Singapore Shanghai Jiao Tong University Institute of Image Communication and Information Processing Shanghai China

As the deadliest form of pollution, air pollution had a prolonged severe damage to the human health and life safety of nearly 99% of the world's population. Facing to the problem that billions of tons of pollutants discharged into the air per year by industrial activities, this paper proposed a novel image-based air pollution monitor (IAPM) by incorporating local and global information in the self-adaptive multiscale transform domain, so as to achieve the timely and effective leakage detection of typical air pollutants from a single image. To be specific, this paper first developed a screen-shaped module according to two significant findings in visual neuroscience, which include the high sensitivity of human eyes to horizontal and vertical stimuli and the center-surround inhibition, by designing and fusing the square module, horizontal strip module and vertical strip module parallelly for simulating the behaviour of human eyes to extract local features. Second, the learnable weights and proportional mapping were applied to incorporate the screen-shaped module and lightweight vision transformer as backbone, towards more richly exploiting and fusing local and global information just as the way a brain perceives external stimuli. Third, a new self-adaptive multiscale transform domain method was devised based on two motivations from the visual characteristics of multiscale perception and the brain characteristics of self-adaptive domain transform to modify the backbone by using the operations of pooling and pointwise convolution. Extensive experiments implemented on the datasets of carbon particulate matters and ethylene leakage confirmed the superior monitoring performance of the proposed IAPM model beyond the state-of-the-art (SOTA) peers by an accuracy gain of about 4%. Furthermore, the proposed IAPM model only required 0.089 GFLOPs and 0.15 million model parameters, remarkably outperforming SOTA competitors in computational efficiency and storage resources. © 1999-2

关键词： Information leakage

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Coordinated Guiding Vector Field Design for Ordering-Flexible Multi-Robot Surface Navigation

arXiv

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arXiv 2024年

作者： Hu, Bin-Bin Zhang, Hai-Tao Yao, Weijia Sun, Zhiyong Cao, Ming The School of Artificial Intelligence and Automation The Engineering Research Center of Autonomous Intelligent Unmanned Systems The Key Laboratory of Image Processing and Intelligent Control The State Key Lab of Digital Manufacturing Equipment and Technology Huazhong University of Science and Technology Wuhan430074 China The School of Robotics Hunan University Hunan410082 China The Institute of Engineering and Technology University of Groningen Groningen9747 AG Netherlands Department of Electrical Engineering Eindhoven University of Technology Netherlands

We design a distributed coordinated guiding vector field (CGVF) for a group of robots to achieve ordering-flexible motion coordination while maneuvering on a desired two-dimensional (2D) surface. The CGVF is characterized by three terms, i.e., a convergence term to drive the robots to converge to the desired surface, a propagation term to provide a traversing direction for maneuvering on the desired surface, and a coordinated term to achieve the surface motion coordination with an arbitrary ordering of the robotic group. By setting the surface parameters as additional virtual coordinates, the proposed approach eliminates potential singularity of the CGVF and enables both the global convergence to the desired surface and the maneuvering on the surface from all possible initial conditions. The ordering-flexible surface motion coordination is realized by each robot to share with its neighbors only two virtual coordinates, i.e. that of a given target and that of its own, which reduces the communication and computation cost in multi-robot surface navigation. Finally, the effectiveness of the CGVF is substantiated by extensive numerical simulations. Copyright © 2024, The Authors. All rights reserved.

关键词： Navigation

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RBP-Former: Joint Prediction of RNA-protein Binding Sites on Full-length RNA Transcripts for Multiple RBPs

RBP-Former: Joint Prediction of RNA-protein Binding Sites on...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Yichong Li Xiaojian Liu Fan Cheng Xiaoyong Pan Yang Yang Department of Computer Science and Engineering Shanghai Jiao Tong University Shanghai China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai China Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai China

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

RNA-binding proteins (RBPs) are essential for gene expression, and the complex RNA-protein interaction mechanisms require analysis of global RNA information. Therefore, accurate prediction of RBP binding sites on full-length RNA transcripts is crucial for understanding these mechanisms and their roles in diseases. While machine learning methods can predict RBP binding to RNA fragments, extending this to full-length transcripts presents challenges due to sequence length and data imbalance. In this paper, we introduce RBP-Former, a binding site joint prediction model designed specifically for full-length RNA transcripts that can be used for multiple RBPs. This model processes information at both coarse and fine-grained levels to fully exploit sequence data and its interactions with multiple RBPs. We develop multi-level imbalance learning strategies, achieving favorable results on imbalanced data. Our method outperforms existing methods in predicting binding sites on full-length RNA transcripts for multiple RBPs, demonstrating its effectiveness in handling imbalanced label and sample distributions.

关键词： Proteins Protein engineering Accuracy RNA Machine learning Predictive models Data models Gene expression Bioinformatics Diseases

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Short-Term Hybrid Prognostics of Fuel Cells: A Comparative and Improvement Study

SSRN

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SSRN 2024年

作者： Sheng, Chuang Fu, Jun Zu, YanMin Deng, ZhongHua Li, Xi School of Artificial Intelligence and Automation Key Laboratory of Image Processing and Intelligent Control Education Ministry Huazhong University of Science and Technology Wuhan430074 China Shenzhen Huazhong University of Science and Technology Research Institute Shenzhen518055 China School of Electronic Information Engineering Jingchu University of Technology Jingmen448000 China

Accurately predicting the performance degradation trend of fuel cells helps take measures in advance and prolong the service life of the stack, which led to the creation of a novel hybrid forecasting approach. The first grey model prediction method based on residual exponential smoothing optimization (ES-R-GM) can capture the voltage deterioration trend. The integration of two different ES techniques, specifically the double ES (ES2) and cubic ES (ES3), is explored to investigate their effect on improving the predictive accuracy of the GM model. The second method of the adaptive network fuzzy inference system (ANFIS) can characterize local nonlinear behaviour. The simulated annealing (SA) algorithm is utilized to optimize ANFIS results under different fuzzy rule selection strategies. The outcomes of the two types of prediction methods mentioned above are combined to create a hybrid prediction using the data fusion method and the moving window technique. Different hybrid methods are evaluated under general conditions and further detailed optimization. The proposed hybrid framework is verified by the data obtained from the experimental platform. Moreover, when applied to consistent public datasets, the hybrid approach maintains its robustness and accuracy compared with other prognostic methods. © 2024, The Authors. All rights reserved.

关键词： Simulated annealing

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Federated Motor imagery Classification for Privacy-Preserving Brain-Computer Interfaces

arXiv

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arXiv 2024年

作者： Jia, Tianwang Meng, Lubin Li, Siyang Liu, Jiajing Wu, Dongrui The Key Laboratory The Ministry of Education for Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China Shenzhen Huazhong University Science and Technology Research Institute Shenzhen518063 China The School of Civil and Hydraulic Engineering Huazhong University of Science and Technology Wuhan430074 China

Training an accurate classifier for EEG-based brain-computer interface (BCI) requires EEG data from a large number of users, whereas protecting their data privacy is a critical consideration. Federated learning (FL) is a promising solution to this challenge. This paper proposes Federated classification with local Batch-specific batch normalization and Sharpness-aware minimization (FedBS) for privacy protection in EEG-based motor imagery (MI) classification. FedBS utilizes local batch-specific batch normalization to reduce data discrepancies among different clients, and sharpness-aware minimization optimizer in local training to improve model generalization. Experiments on three public MI datasets using three popular deep learning models demonstrated that FedBS outperformed six state-of-the-art FL approaches. Remarkably, it also outperformed centralized training, which does not consider privacy protection at all. In summary, FedBS protects user EEG data privacy, enabling multiple BCI users to participate in large-scale machine learning model training, which in turn improves the BCI decoding accuracy. © 2024, CC BY.

关键词： Federated learning

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Relative-Posture-Fixed Model Predictive Human-Following control with Visibility Constraints in Obstacle Environments

Relative-Posture-Fixed Model Predictive Human-Following Cont...

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International Conference on Advanced Robotics and Mechatronics (ICARM)

作者： Yikun Zhang Jian Huang Jinqi Yu Yaonan Zhu Yasuhisa Hasegawa Key Laboratory for Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China Shenzhen Huazhong University of Science and Technology Research Institute ShenZhen China Department of Micronano Mechanical Science and Engineering Nagoya University Nagoya Japan

The relative-posture-fixed human following is critical for the human-robot interaction and cooperation in daily scenes such as domestic service and healthcare. However, few of previous researches have discussed the difficulties faced by mobile robots in the real world, including the limitation of sensing range and hindrance from obstacles. For practicality, in this paper we investigate the relative-posture-fixed following control with collision avoidance and visibility constraints. The control task is formulated as a receding-horizon optimization problem and solved under the Nonlinear Model Predictive control (NMPC) framework, while an Extended Kalman Filter (EKF) based human trajectory predict algorithm is integrated into the robot controller. The effectiveness of the proposed algorithm is verified in a simulation, and the results demonstrate a promising performance of our controller for the human-following task in complicated environments.

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