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Multimodal Brain Tumor Segmentation Using Modified 3D UNet3+ Architecture 1

Challenge on Brain Tumor Segmentation, BraTS 2023, International Challenge on Cross-Modality Domain Adaptation for Medical image Segmentation, CrossMoDA 2023, held in conjunction with the Medical image Computing for Computer Assisted Intervention Conference, MICCAI 2023

作者： Yang, Xiao Zheng, Shaohua Intelligent Image Processing and Analysis Laboratory Fuzhou University Fuzhou China

ISBN: (数字)9783031761638

ISBN: (纸本)9783031761621

Glioma is a type of tumor that originates in the glial cells of the brain or the spinal cord, which is the most common and aggressive malignant primary tumor of the central nervous system in adults. Magnetic resonance imaging (MRI) is an efficient way of detection for brain tumors, it contains precise knowledge about the location of the tumor and its component. Manual tumor labeling is a tedious and time-consuming task, hence accurate automatic segmentation has important clinical significance in the diagnosis, and deep learning shows great power on it. In this paper, we propose an improved 3D U-Net3 + segmentation network. We adopt the residual structure in the encoder part to address the challenge of diminishing gradient problem, as well as to enhance the encoder’s capability for feature extraction, thereby facilitating comprehensive feature fusion during up-sampling within the network. Meanwhile, we add a critic network at the end of the U-Net3+, that contributes to the generation of segmentation results that are more authentic and dependable from the segmentation network. We trained and evaluated the architecture on the BraTS 2023 dataset, and achieved LesionWise_Dice of 88.22%, 83.85%, 81.97% for the whole tumor, tumor core and enhancing tumor, respectively. © The Author(s), under exclusive license to Springer Nature Switzerland AG 2024.

关键词： Magnetic resonance imaging

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Attention-stacking adaptive fuzzy neural networks for autism diagnosis

Attention-stacking adaptive fuzzy neural networks for autism...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Zhang, Shuzhan Xiao, Lei Huang, Hui Hu, Zhongyi Wenzhou University Institute of Intelligent Information System Wenzhou University Key Laboratory of Intelligent Image Processing and Analysis College of Computer Science and Artificial Intelligence Wenzhou China

ISBN: (纸本)9798350386226

The current diagnostic methods for Autism Spectrum Disorder (ASD) based on Resting-State Functional Magnetic Resonance Imaging (rs-fMRI) face two significant challenges. Firstly, the functional connectivity networks (FCNs) of the brain are subject to uncertainty due to noise interference during the rs-fMRI acquisition process. Secondly, variations in equipment parameters across different imaging sites lead to diverse distributions of collected features. To address these issues, this paper introduces a novel Multi-Task Stacked Adaptive Fuzzy Neural Network (AT-STTSK) specifically designed for Autism Spectrum Disorder (ASD) classification. The proposed network seamlessly integrates a Multi-Output TSK (MO-TSK) fuzzy system, a Stacked Autoencoder (SAE), and a Transformer. This integration aims to reduce the impact of uncertainty factors, enhance the model's interpretability, and leverage the multi-head attention mechanisms to capture both local and global information, thus strengthening feature learning. Additionally, we explore the utilization of a Contrastive Learning (CL) strategy to further optimize the model. By incorporating these advancements, our AT-STTSK network offers a promising approach for improving the accuracy and reliability of ASD diagnosis based on rs-fMRI data. The validity of the method in this paper is verified on ABIDE dataset, and the result shows that the accuracy rate can reach 85.7% at most. © 2024 IEEE.

关键词： Diseases

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Controllability of neighborhood Corona product networks

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Science China(Information Sciences) 2024年第12期67卷 327-328页

作者： Bo LIU Xuan LI Qiang ZHANG Junjie HUANG Housheng SU Ministry of Education Key Laboratory for Intelligent Analysis and Security Governance of Ethnic Languages School of Information Engineering Minzu University of China School of Mathematical Sciences Inner Mongolia University Key Laboratory of Image Processing and Intelligent Control of Education Ministry of China School of Artificial Intelligence and Automation Huazhong University of Science and Technology

Controlling networks aims to study the models, structures,and related dynamics of complex networks. The primary problem of controlling networks is to determine whether they are controllable. Nowadays, controllability has been widely studied and applied to system engineering and control theory, power systems, aerospace, and quantum systems. Various classical criteria include the Gram matrix criterion, Kalman rank criterion, and PBH test.

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Multi-scale convolutional neural networks for brain disease diagnosis

Multi-scale convolutional neural networks for brain disease ...

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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Hu, Zhongyi Gao, Libin Tong, Yinsheng Lu, Xingjin Li, Rui Xiao, Lei Li, Zuoyong Wenzhou University College of Computer Science and Aritificial Intelligence Wenzhou325035 China Key Laboratory of Intelligent Image Processing and Analysis Wenzhou China Minjiang University College of Computer and Control Engineering Fuzhou China

ISBN: (纸本)9798350337488

The brain is the most sophisticated and complex organ in the human body. Nowadays, diagnosing complex and diverse brain diseases is a hot topic. Alzheimer's Disease (AD), Autism Spectrum Disorder (ASD), and others are common brain diseases. With the increased usage of Artificial Intelligence (AI) in medical image analysis, the endeavor to make AI comprehend brain images for assisting doctors in making objective diagnoses of brain diseases has gained considerable attention. Resting-state functional magnetic resonance imaging (rs-fMRI) is a widely used tool for diagnosing and analyzing brain ***, the Pearson correlation coefficient (PCC) method constructs a dynamic functional connectivity (dFC) network using a fixed window size. However, this method has limitations as it is challenging to extract potential high-level features from the dFC and determine local feature relevance. This paper presents a method for constructing dFC based on multi-scale sliding windows and proposes Multi-scale Convolutional Neural Networks (MsCNN) for learning and analyzing dFC at various scales. Finally, a deep fusion of features learned at different scales is employed for the diagnostic classification of brain *** to the rs-fMRI dataset from ADNI, the classification accuracy was 84.0% for eMCI/lMCI, 84.4% for lMCI/AD, and 58.4% for NC/eMCI/lMCI/AD. Applied to rs-fMRI data from ABIDE, the accuracy was 74.7% for ASD/NC. The proposed method exhibits robust classification performance and introduces a new approach to diagnosing other brain diseases. © 2023 IEEE.

关键词： Brain diseases Classification Diagnostic Multi-scale convolutional neural networks (MsCNN) Resting-state functional magnetic resonance imaging (rs-fMRI)

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Attention-stacking adaptive fuzzy neural networks for autism diagnosis

Attention-stacking adaptive fuzzy neural networks for autism...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Shuzhan Zhang Lei Xiao Hui Huang Zhongyi Hu College of Computer Science and Artificial Intelligence Wenzhou University Institute of Intelligent Information System Wenzhou University Key Laboratory of Intelligent Image Processing and Analysis Wenzhou China

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

关键词： Representation learning Autism Accuracy Uncertainty Attention mechanisms Adaptive systems Noise Contrastive learning Transformers Fuzzy neural networks

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Alzheimer’s Disease Diagnosis Based on Collaborative Learning Augmented Algorithms 18th

Alzheimer’s Disease Diagnosis Based on Collaborative Learn...

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18th Chinese intelligent Systems Conference, CISC 2022

作者： Gao, Libin Hu, Zhongyi Li, Zuoyong Lu, Xingjin Li, Rui Tong, Yinsheng Lin, Dehou College of Computer Science and Aritificial Intelligence Wenzhou University Wenzhou325035 China Key Laboratory of Intelligent Image Processing and Analysis Wenzhou325035 China College of Computer and Control Engineering Minjiang University Fuzhou350108 China

ISBN: (纸本)9789811962028

In this study, a novel training method is innovatively proposed to address the problem of poor generalisation of trained models due to imbalance in Alzheimer’s disease (AD) data. The method alternates AD image data with dog and cat data from natural images for collaborative learning training across datasets, enhancing the generalisation ability of the models. At the same time, inspired by current work related to attention mechanisms under the field of computer vision, the model is reconstructed and an attention module is added to the model to further improve the accuracy of the model. The experimental results show that the method has good classification performance and provides new ideas for the diagnosis of other brain diseases. © 2022, The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

关键词： Convolutional neural networks

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Generalized Zero-shot Learning Based on Dual Latent Space Reconstruction

Generalized Zero-shot Learning Based on Dual Latent Space Re...

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2022 International Conference on intelligent Systems, Communications, and Computer Networks, ISCCN 2022

作者： Xu, Yangdongfang Yang, Guan Liu, Xiaoming Liu, Yang School of Computer Science Zhongyuan University of Technology Zhengzhou China Henan Key Laboratory on Public Opinion Intelligent Analysis Zhengzhou China Zhengzhou Key Laboratory of Text Processing and Image Understanding Zhengzhou China School of Telecommunications Engineering Xidian University Xi’an China

ISBN: (纸本)9781510657342

Generalized Zero-Shot Learning (GZSL) is characterized as a training process that comprises visual samples from seen classes and semantic samples from seen and unseen classes, followed by a testing process that classifies visual samples from seen and unseen classes. Existing zero-shot learning (ZSL) approaches suffer from domain shift and information loss issues as a result of class differences between visible and unseen classes, as well as uneven image distribution. In this study, a generalized zero-shot learning strategy based on dual latent space reconstruction (DLR-GZSL) is proposed. The method aims to establish a latent space of shared semantic and visual information, uses dual learning to align different modal representations to alleviate the domain shift problem, uses triplet loss to improve intra-class diversity and inter-class separability of the generated samples, and uses information bottleneck to retain as much valid generated feature information as possible to reduce information loss. Experiments on the CUB, SUN, AWA1, and AWA2 datasets reveal that the suggested method has more accurate than previous methods, demonstrating its effectiveness. © 2022 SPIE.

关键词： Zero-shot learning

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Causal Invariant Hierarchical Molecular Representation for Out-of-distribution Molecular Property Prediction

Causal Invariant Hierarchical Molecular Representation for O...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Wen, Xinlong Guo, Yifei Wei, Shuoying Long, Wenhan Zhu, Lida Zhu, Rongbo College of Informatics Huazhong Agricultural University Wuhan430070 China Shenzhen Institute of Nutrition and Health Huazhong Agricultural University Shenzhen518000 China Shenzhen Branch Guangdong Laboratory for Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of Agriculture Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences Shenzhen518000 China Engineering Research Center of Intelligent Technology for Agriculture Ministry of Education Hubei Wuhan430074 China Key Laboratory of Ministry of Education for Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Hubei Wuhan430074 China

ISBN: (纸本)9798350386226

Molecular representation learning is widely used in the field of drug discovery, due to its ability to accurately capture the complex features of compounds in high-dimensional space. However, existing molecular representation learning models are prone to be influenced by spurious parts during distribution shifts (also known as out-of-distribution, or OOD), which results in models mistakenly treating these spurious parts as crucial features of molecules, thereby limiting the generalization capability of the models. To tackle this issue, a novel invariant molecular representation learning model, called Causal Invariant Hierarchical Molecular Representation Graph Neural Networks (CHiMoGNN), is proposed for OOD molecular property prediction. In CHiMoGNN, a Feature Enhancement (FE) module is designed to leverage the multi-level molecular parts to enhance the expression of invariant features, thereby enhancing the model's capability to capture key molecular information. In addition, a Cartesian Product based Environmental Impact (EI) module is adopted to generate counterfactual samples with environmental diversity. Consequently, these samples are utilized to train a classifier that maintains consistent performance across various environments. Extensive experiments on seven real-world datasets demonstrate that CHiMoGNN outperforms 9 state-of-the-art models, achieving a 5.73% increase in average ROC-AUC, and the results also show that CHiMoGNN can effectively maintain generalization in various distribution shifts. Code and datasets are available at https://***/Chertuion/CHiMoGNN. © 2024 IEEE.

关键词： Graph neural networks

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A TDOA/AOA Hybrid Positioning Based on Improved Sparrow Search Algorithm for Mobile Position Estimation

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Wireless Communications and Mobile Computing 2023年第1期2023卷

作者： Hu, Zhongyi Lu, Dongwan Xu, Minghai Tong, Yinsheng Ma, Hanjie Yue, Yinggao School of Computer Science and Artificial Intelligence Wenzhou University Wenzhou325035 China Intelligent Information Systems Institute Wenzhou University Wenzhou325035 China Key Laboratory of Intelligent Image Processing and Analysis Wenzhou China School of Intelligent Manufacturing and Electronic Engineering Wenzhou University of Technology Wenzhou325035 China

To address the difficulty in calculating the nonlinear equation of time difference of arrival (TDOA) positioning, as well as the problem of measurement error in the hybrid time difference of arrival/angle of arrival (TDOA/AOA) positioning algorithm, an improved sparrow search algorithm is proposed to optimize positioning, and the optimization mechanism is retained on the basis of improving the performance of the original algorithm. The maximum likelihood estimation method is used to calculate the objective function, and then, the estimated function of the mobile station is used as the fitness function to generate the initial population of sparrows. Then, using particle swarm optimization, optimize the sparrow search algorithm and obtain the population's optimal solution in order to obtain the optimal position. The simulation results show that, when compared to the existing algorithm, increasing the number of base stations increases the average accuracy of the sparrow search algorithm (SSA) positioning method by 18.54% and 4.5%, respectively, and, when compared to the proposed particle swarm optimization (PSO) positioning method, by 13.79% and 11.6% as the radius increases. The SSA hybrid positioning algorithm performs better in terms of positioning accuracy, convergence speed, and robustness. © 2023 Zhongyi Hu et al.

关键词： Time difference of arrival

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Multi-scale convolutional neural networks for brain disease diagnosis

Multi-scale convolutional neural networks for brain disease ...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Zhongyi Hu Libin Gao Yinsheng Tong Xingjin Lu Rui Li Lei Xiao Zuoyong Li College of Computer Science and Aritificial Intelligence Wenzhou University Wenzhou China Key Laboratory of Intelligent Image Processing and Analysis Wenzhou China College of Computer and Control Engineering Minjiang University Fuzhou China

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