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ASME 2010 Summer Bioengineering Conference, SBC 2010

作者： Keyes, Joseph T. Borowicz, Stacy Utzinger, Urs Simon, Bruce Vande Geest, Jonathan P. Graduate Interdisciplinary Program in Biomedical Engineering University of Arizona Tucson AZ United States Department of Aerospace and Mechanical Engineering University of Arizona Tucson AZ United States BIO5 Institute for Biocollaborative Research University of Arizona Tucson AZ United States Department of Biomedical Engineering University of Arizona Tucson AZ United States

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Transport in pulsatile axisymmetric stented arterial models from location-dependent variations in permeability and mechanical properties

Transport in pulsatile axisymmetric stented arterial models ...

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ASME 2011 Summer Bioengineering Conference, SBC 2011

作者： Keyes, Joseph T. Simon, Bruce R. Geest, Jonathan P. Vande Graduate Interdisciplinary Program in Biomedical Engineering University of Arizona Tucson AZ United States Department of Aerospace and Mechanical Engineering University of Arizona Tucson AZ United States BIO5 Institute for Biocollaborative Research University of Arizona Tucson AZ United States Department of Biomedical Engineering University of Arizona Tucson AZ United States

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The complete mitochondrial genome of blacktip sardinella,Sardinella melanura(Clupeiformes: Clupeidae)

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Mitochondrial DNA Part B 2019年第1期4卷 1125-1126页

作者： Sapto Andriyono Md. Jobidul Alam Sinar Pagi Sektiana Hyun-Woo Kim Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Fisheries and Marine Faculty Universitas Airlangga Surabaya Indonesia Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Biology Pukyong National University Busan Republic of Korea

The mitochondrial genome of a blacktip sardinella,Sardinella melanurawas determined by high-throughput sequencing (HTS) technique. The mitogenome ofS. melanura(16,646bp), encoded the canonical 37 mitochondrial structural genes (13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes). The gene arrangement ofS. melanurawas identical to its relative species includingSardinella lemuru, Sardinella longicepsandSardinella *** for COX1 (GTG), all the other PCGs showed the typical ATG as start codon. Incomplete stop codons were identified in ND2, COX2, COX3, ND3, ND4, andCytb. The phylogenetic tree result showed thatS. melanurawas most closely related toS. jussieu,S. lemuru, andSardinella maderansiswith 83% identity, respectively.

关键词： High-throughput sequencing Sardinella melanura mitogenome Indonesia clupeidae

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Complete mitochondrial genome of brownstripe red snapper,Lutjanus vitta(Perciformes: Lutjanidae)

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Mitochondrial DNA Part B 2018年第2期3卷 1129-1130页

作者： Sapto Andriyono Jobaidul Alam Dong Hee Kwak Hyun-Woo Kim Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Fisheries and Marine Faculty Universitas Airlangga East Java Indonesia Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Biology Pukyong National University Busan Republic of Korea

The complete mitochondrial genome of the brownstripe red snapper,Lutjanus vittawas determined by MiSeq sequencing platform. The mitogenome ofL. vitta(16,498 bp) encoded the typical 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and two non-coding regions (origin of light strand replication; OLandD-Loopcontrol region; CR). Phylogenetic analysis based on the full mitochondrial genome sequences showed thatL. vittais most closely related toL. russellii. The complete mitogenome sequence ofL. vittawould provide the information of the genetic biodiversity inLutjanusfishes, which would be further used for their scientific management in Indonesian waters.

关键词： Next generation sequencing Lutjanus vitta mitogenome snapper Indonesia

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Complete mitochondrial genome ofPenaeus acehensis(Crustacea, Decapoda, Penaeidae) from Aceh province, Indonesia

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Mitochondrial DNA Part B 2018年第2期3卷 898-899页

作者： Sinar Pagi Sektiana M. Tahang Sapto Andriyono Jobaidul Alam Hyun-Woo Kim Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaAquaculture Technology Study Program Sekolah Tinggi Perikanan Jakarta Indonesia Brackishwater Aquaculture Development Center Aceh Indonesia Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaFisheries and Marine Faculty Universitas Airlangga Surabaya Indonesia Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Biology Pukyong National University Busan Republic of Korea

Penaeid shrimps are widely distributed from Indian to western Pacific Oceans and some which are economically important. In this study, we reported full mitochondrial genome of an endemic shrimp species,Penaeus acehensis, which inhabits exclusively in the coastal water of Aceh, Indonesia. Full length of circular mitogenome ofP. acehensiswas 15,991 bp in length, which contained 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. Start codons of all protein-coding genes were ATN except for COX1 in which ACG was used. Incomplete stop codon (T- -) was found in five genes including COX2, COX3, NAD5, NAD4, and NAD4L. Among its relatives,P. acehensiswas most closely related toPenaeus monodonshowing 89% sequence identity in its mitogenome, which was corresponding to morphological analysis. Phylogenetic tree result showed thatP. acehensiswas clustered together with those were distributed in Indo-West Pacific region (clade II), which is distinct from Eastern Pacific region (clade I).

关键词： Mitogenome Dendrobranchiata next-generation sequencing shrimp Indonesia

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Development of Web-based remote monitoring system for the moving-actuator artificial heart

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ASAIO Journal 2000年第2期46卷 199-199页

作者： Chung, Jinhan Lee, Jihoon Jo, Yungho Min, ByoungGoo Interdisciplinary Program in Medical and Biological Engineering Major Seoul National University Department of Biomedical Engineering Seoul National University College of Medicine

The remote monitoring system including hemodynamic information and pump status of the implanted animal could be helpful during the in vivo experiment or clinical trial for an artificial heart implantation. In order to monitor the course of the in vivo experiment continuously and anywhere, web-based remote monitoring system was developed, which could be monitored pressures (AoP, LAP, RAP, PAP) and flow information as well as the pump operating conditions. The system consists of the several parts including data sending, storing, viewer part. The data sending part was constructed using component object model and the viewer part was constructed using the Java applet. In addition, the dialog box was introduced to communicate each other instantly and the alarming function was also introduced when the hemodynamic values were out of the desired ranges. The developed remote monitoring system was applied during the in vivo experiment of the VVAD implantation for 1 month and showed designed work without fail.

关键词： Heart valve prostheses

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High-density array of single cell traps for high-throughput imaging of calcium dynamics in response to oxidative stress

High-density array of single cell traps for high-throughput ...

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14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010

作者： Rivet, Catherine A. Chung, Kwanghun Kemp, Melissa L. Lu, Hang Interdisciplinary Program in Bioengineering Georgia Institute of Technology United States School of Chemical and Biomolecular Engineering Georgia Institute of Technology United States Wallace H. Coulter Department of Biomedical Engineering Georgia Institute of Technology Emory University United States

ISBN: (纸本)9781618390622

Stochasticity in gene expression, protein or metabolite levels contributes to cell-cell variations. The analysis of these variations could lead to a better understanding of cellular processes and drug responses, but require single cell analysis techniques. To this end, we developed a new microfluidic platform for high-throughput capture (in about a minute) with low shear and imaging of thousands of single cells. This platform is compatible with upstream components for complex cell stimulation patterns. Imaging of calcium dynamics in response to oxidative stress with this platform reveals variable phenotypic responses within clonal populations.

关键词： Calcium

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Temporal and Steady State Acoustic Field in a Cell Culture Well: Simulation

Temporal and Steady State Acoustic Field in a Cell Culture W...

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Annual International Conference of the IEEE engineering in Medicine and Biology Society

作者： Min Joo Choi Gwan Suk Kang Tetsuya Kodama Andrew J. Coleman Interdisciplinary Postgraduate Program of Biomedical Engineering and Department of Medicine Jeju National University Interdisciplinary Postgraduate Program of Biomedical Engineering Jeju National University Graduate School of Biomedical Engineering Tohoku University Department of Medical Physics Guy's & St Thomas' NHS Foundation Trust

ISBN: (纸本)9781457702150

The present study was to understand the true power irradiated to the cell line cultured on a culture well, in relation to the nominal power from ultrasonic transducer, and to characterize the temporal variations of the acoustic pressure exerted on the cell. Numerical simulation was carried out for a typical-culture well exposed to 1 MHz continuous ultrasound generated by a circular transducer contact underneath the well. The results showed that the ultrasonic pressure exposed to the cell layer in the well was 6.7 times larger than the nominal pressure of the ultrasonic transducer. The ultrasonic pressure in the transient period rose rapidly and was widely variable, and the temporal peak was even greater than that of the steady state period. This suggests that the cells undergo characteristically different ultrasonic exposure between the transient and the steady state period.

关键词： Cell culture ultrasonic transducers steady-state period Power rating sound pressure acoustic field Cell Line temporal variations true power Steady state

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Complete mitochondrial genome of saw-jawed monocle breamScolopsis ciliataand its phylogenetic relationship in genusScolopsis

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Mitochondrial DNA Part B 2019年第1期4卷 393-394页

作者： Sapto Andriyono Sinar Pagi Sektiana Md. Jobaidul Alam Hyun-Woo Kim Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Faculty of Fisheries and Marine Universitas Airlangga C Campus JI Surabaya Indonesia Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Biology Pukyong National University Busan Republic of Korea

The complete mitochondrial genome of the saw-jawed monocle bream,Scolopsis ciliatawas determined by the next generation sequencing (NGS) technique. The circular mitogenome ofS. ciliata(16,733 bp) encoded the canonical 37 genes including 13 proteins, 22tRNAgenes, 2 rRNAs (12S rRNA and 16S rRNA), and two non-coding regions; the origin of light strand replication (OL) and the putative control region (D-Loop). The gene arrangement of theS. ciliatamitogenome was identical to its relative,Scolopsis vosmeri. Phylogenetic analysis based on the full mitochondrial genome sequences showed thatS. ciliatais most closely related toS. vosmeriwith 83% nucleotide sequence identity. The mitogenome information ofS. ciliatawould be the useful information to understand the evolutional relationship of fishes in genus Scolopsis.

关键词： Next generation sequencing Scolopsis ciliata mitogenome monocle bream

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Indirect ophthalmoscopic stereo video system using three-dimensional LCD

Indirect ophthalmoscopic stereo video system using three-dim...

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Stereoscopic Displays and Applications XX

作者： Kong, Hyoun-Joong Seo, Jong Mo Hwang, Jeong Min Kim, Hee Chan Interdisciplinary Program Biomedical Engineering Major Graduate School Seoul National University Seoul Korea Republic of Department of Electrical Engineering and Computer Sciences Seoul National University Seoul Korea Republic of Department Ophthalmology College of Medicine Seoul National University Seoul Korea Republic of Department of Biomedical Engineering College of Medicine Seoul National University Seoul Korea Republic of

Binocular indirect ophthalmoscope (BIO) provides a wider view of fundus with stereopsis contrary to the direct one. Proposed system is composed of portable BIO and 3D viewing unit. The illumination unit of BIO utilized high flux LED as a light source, LED condensing lens cap for beam focusing, color filters and small lithium ion battery. In optics unit of BIO, beam splitter was used to distribute an examinee's fundus image both to examiner's eye and to CMOS camera module attached to device. Captured retinal video stream data from stereo camera modules were sent to PC through USB 2.0 connectivity. For 3D viewing, two video streams having parallax between them were aligned vertically and horizontally and made into side-by-side video stream for cross-eyed stereoscopy. And the data were converted into autostereoscopic video stream using vertical interlacing for stereoscopic LCD which has glass 3D filter attached to the front side of it. Our newly devised system presented the real-time 3-D view of fundus to assistants with less dizziness than cross-eyed stereoscopy. And the BIO showed good performance compared to conventional portable BIO (Spectra Plus, Keeler Limited, Windsor, UK). © 2009 SPIE-IS&T.

关键词： Stereo image processing

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