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Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics

BMC Bioinformatics 2017年第9期18卷 1-9页

作者： Eric C. Rouchka Juw Won Park Julia H. Chariker David A. Tieri Shreedharkumar Rajurkar Vikas Singh Nishchal K. Verma Yan Cui Mark Farman Bradford Condon Jolanta Jaromczyk Neil Moore Jerzy Jaromczyk Daniel Harris Patrick Calie Eun Kyong Shin Robert L. Davis Arash Shaban-Nejad Joshua M. Mitchell Hunter N. B. Moseley Robert M. Flight Qing Jun Wang Richard M. Higashi Teresa W-M Fan Andrew N. Lane Liangqun Lu Bernie J Daigle Jr. Xi Chen Andrey Smelter Jerzy W. Jaromczyk Bailey K. Phan Nathaniel J. Serpico Ethan G. Toney Li Chen Caroline E. Melton Jennifer R. Mandel Bernie J. Daigle Jr. Hao Chen Kazi I. Zaman Ramin Homayouni Patrick J. Trainor Andrew P. DeFilippis Samantha M. Carlisle Shesh N. Rai Department of Computer Engineering and Computer Science University of Louisville Duthie Center for Engineering Louisville KY 40292 USA Kentucky Biomedical Research Infrastructure (KBRIN) Bioinformatics Core 522 East Gray Street Louisville KY 40292 USA Department of Psychological and Brain Sciences University of Louisville Louisville KY 40292 USA Department of Anatomical Sciences and Neurobiology University of Louisville Louisville KY 40292 USA Department of Electrical Engineering IIT Kanpur India Department of Microbiology Immunology and Biochemistry University of Tennessee Health Science Center Memphis TN 38103 USA Center for Integrative and Translational Genomics University of Tennessee Health Science Center Memphis TN 38103 USA Department of Plant Pathology University of Kentucky Lexington KY 40546 USA UK Healthcare Genomics University of Kentucky Lexington KY 40536 USA Department of Entomology & Plant Pathology University of Tennessee Knoxville TN 37996 USA Department of Forestry University of Kentucky Lexington KY 40506 USA Department of Computer Science University of Kentucky Lexington KY 40506 USA Department of Computer Science University of Kentucky Lexington KY 40508 USA Department of Biological Sciences Eastern Kentucky University Richmond KY 40475 USA University of Tennessee Health Science Center – Oak-Ridge National Lab (UTHSC-ORNL) Center for Biomedical Informatics Department of Pediatrics Memphis TN 38103 USA Department of Molecular & Cellular Biochemistry University of Kentucky Lexington KY 40536 USA Markey Cancer Center University of Kentucky Lexington KY 40536 USA Center for Environmental and Systems Biochemistry University of Kentucky Lexington KY 40536 USA Institute for Biomedical Informatics University of Kentucky Lexington KY 40536 USA Department of Molecular and Cellular Biochemistry University of Kentucky Lexington KY 40536 USA Department of Statistics University of Kentucky Louisville KY

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Organ-On-A-Chip: Biomechanical Strain Exacerbates Inflammation on a Progeria-on-a-Chip Model (Small 15/2017)

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Small 2017年第15期13卷

作者： João Ribas Yu Shrike Zhang Patrícia R. Pitrez Jeroen Leijten Mario Miscuglio Jeroen Rouwkema Mehmet Remzi Dokmeci Xavier Nissan Lino Ferreira Ali Khademhosseini Biomaterials Innovation Research Center Division of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Cambridge MA 02139 USA Harvard-MIT Division of Health Sciences and Technology Massachusetts Institute of Technology Cambridge MA 02139 USA Doctoral Program in Experimental Biology and Biomedicine Center for Neuroscience and Cell Biology Institute for Interdisciplinary Research University of Coimbra 3030-789 Coimbra Portugal CNC-Centre for Neuroscience and Cell Biology University of Coimbra 3030-789 Coimbra Portugal Institute for Interdisciplinary Research University of Coimbra 3030-789 Coimbra Portugal Department of Developmental BioEngineering MIRA Institute for Biomedical Technology and Technical Medicine University of Twente 7500 AE Enschede The Netherlands Department of Biomechanical Engineering MIRA Institute for Biomedical Technology and Technical Medicine University of Twente 7500 AE Enschede The Netherlands CECS INSERM U861 I-STEM AFM Institute for Stem Cell Therapy and Exploration of Monogenic Diseases 28 Rue Henri Desbrueres 91100 Corbeil-Essones France Department of Physics King Abdulaziz University Jeddah 21569 Saudi Arabia Department of Bioindustrial Technologies College of Animal Bioscience and Technology Konkuk University Hwayang-dong Gwangjin-gu Seoul 143-701 Republic of Korea

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Time synchronization between parietal–frontocentral connectivity with MRCP and gait in post-stroke bipedal tasks

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Journal of Neuroengineering and Rehabilitation 2024年第1期21卷 101页

作者： Phang, Chun-Ren Su, Kai-Hsiang Cheng, Yuan-Yang Chen, Chia-Hsin Ko, Li-Wei International Ph.D. Program in Interdisciplinary Neuroscience (UST) College of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu Taiwan Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B) College of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu Taiwan Department of Biological Science and Technology College of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu Taiwan Department of Physical Medicine and Rehabilitation Taichung Veterans General Hospital Taichung Taiwan Department of Post-Baccalaureate Medicine College of Medicine National Chung Hsing University Taichung Taiwan School of Medicine National Yang Ming Chiao Tung University Taipei Taiwan Department of Physical Medicine and Rehabilitation Kaohsiung Medical University Hospital Kaohsiung Taiwan School of Medicine College of Medicine Kaohsiung Medical University Kaohsiung Taiwan Regenerative Medicine and Cell Therapy Research Center Kaohsiung Medical University Kaohsiung Taiwan Institute of Electrical and Control Engineering National Yang Ming Chiao Tung University Hsinchu Taiwan Department of Biomedical Science and Environment Biology Kaohsiung Medical University Kaohsiung Taiwan Drug Development and Value Creation Research Center Kaohsiung Medical University Kaohsiung Taiwan

Background: In post-stroke rehabilitation, functional connectivity (FC), motor-related cortical potential (MRCP), and gait activities are common measures related to recovery outcomes. However, the interrelationship between FC, MRCP, gait activities, and bipedal distinguishability have yet to be investigated. Methods: Ten participants were equipped with EEG devices and inertial measurement units (IMUs) while performing lower limb motor preparation (MP) and motor execution (ME) tasks. MRCP, FCs, and bipedal distinguishability were extracted from the EEG signals, while the change in knee degree during the ME phase was calculated from the gait data. FCs were analyzed with pairwise Pearson’s correlation, and the brain-wide FC was fed into support vector machine (SVM) for bipedal classification. Results: Parietal–frontocentral connectivity (PFCC) dysconnection and MRCP desynchronization were related to the MP and ME phases, respectively. Hemiplegic limb movement exhibited higher PFCC strength than nonhemiplegic limb movement. Bipedal classification had a short-lived peak of 75.1% in the pre-movement phase. These results contribute to a better understanding of the neurophysiological functions during motor tasks, with respect to localized MRCP and nonlocalized FC activities. The difference in PFCCs between both limbs could be a marker to understand the motor function of the brain of post-stroke patients. Conclusions: In this study, we discovered that PFCCs are temporally dependent on lower limb gait movement and MRCP. The PFCCs are also related to the lower limb motor performance of post-stroke patients. The detection of motor intentions allows the development of bipedal brain-controlled exoskeletons for lower limb active rehabilitation. © The Author(s) 2024.

关键词： Brain–computer interface Functional connectivity Motor execution Motor preparation Post-stroke

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26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 Antwerp, Belgium. 15-20 July 2017 Abstracts

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BMC NEUROSCIENCE 2017年第SUPPL 1期18卷 95-176页

作者： [Anonymous] Department of Neuroscience Yale University New Haven CT 06520 USA Department Physiology & Pharmacology SUNY Downstate Brooklyn NY 11203 USA NYU School of Engineering 6 MetroTech Center Brooklyn NY 11201 USA Departament de Matemàtica Aplicada Universitat Politècnica de Catalunya Barcelona 08028 Spain Institut de Neurobiologie de la Méditerrannée (INMED) INSERM UMR901 Aix-Marseille Univ Marseille France Center of Neural Science New York University New York NY USA Aix-Marseille Univ INSERM INS Inst Neurosci Syst Marseille France Laboratoire de Physique Théorique et Modélisation CNRS UMR 8089 Université de Cergy-Pontoise 95300 Cergy-Pontoise Cedex France Department of Mathematics and Computer Science ENSAT Abdelmalek Essaadi’s University Tangier Morocco Laboratory of Natural Computation Department of Information and Electrical Engineering and Applied Mathematics University of Salerno 84084 Fisciano SA Italy Department of Medicine University of Salerno 84083 Lancusi SA Italy Dipartimento di Fisica Università degli Studi Aldo Moro Bari and INFN Sezione Di Bari Italy Data Analysis Department Ghent University Ghent Belgium Coma Science Group University of Liège Liège Belgium Cruces Hospital and Ikerbasque Research Center Bilbao Spain BIOtech Department of Industrial Engineering University of Trento and IRCS-PAT FBK 38010 Trento Italy Department of Data Analysis Ghent University Ghent 9000 Belgium The Wellcome Trust Centre for Neuroimaging University College London London WC1N 3BG UK Department of Electronic Engineering NED University of Engineering and Technology Karachi Pakistan Blue Brain Project École Polytechnique Fédérale de Lausanne Lausanne Switzerland Departement of Mathematics Swansea University Swansea Wales UK Laboratory for Topology and Neuroscience at the Brain Mind Institute École polytechnique fédérale de Lausanne Lausanne Switzerland Institute of Mathematics University of Aberdeen Aberdeen Scotland UK Department of Integrativ

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Cover Feature: Gas-Phase Transformation of Fluorinated Benzoporphyrins to Porphyrin-Embedded Conical Nanocarbons (Chem. Eur. J. 53/2020)

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Chemistry – A European Journal 2020年第53期26卷 12083-12083页

作者： Dr. Dominik Lungerich Dr. Jakob Felix Hitzenberger Michael Ruppel Dr. Tibor Döpper Dr. Matthias Witt Prof. Dr. Ivana Ivanović-Burmazović Prof. Dr. Andreas Görling Prof. Dr. Norbert Jux Prof. Dr. Thomas Drewello Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM) Organic Chemistry II Friedrich-Alexander-University Erlangen-Nuernberg Nikolaus-Fiebiger-Str. 10 91058 Erlangen Germany Center for Nanomedicine Institute for Basic Science (IBS) Seoul 03722 Republic of Korea Graduate Program of Nano Biomedical Engineering (NanoBME) Advanced Science Institute Yonsei University Seoul 03722 Republic of Korea Department of Chemistry and Pharmacy Physical Chemistry I Friedrich-Alexander-University Erlangen-Nuernberg Egerlandstrasse 3 91058 Erlangen Germany Department of Chemistry and Pharmacy Theoretical Chemistry Friedrich-Alexander-University Erlangen-Nuernberg Egerlandstrasse 3 91058 Erlangen Germany Bruker Daltonics GmbH Fahrenheitstrasse 4 28359 Bremen Germany Department of Chemistry and Pharmacy Bioinorganic Chemistry Friedrich-Alexander-University Erlangen-Nuernberg Egerlandstrasse 1 91058 Erlangen Germany

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scTenifoldXct: A semi-supervised method for predicting cell-cell interactions and mapping cellular communication graphs

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Cell systems 2023年第4期14卷 302-311.e4页

作者： Yongjian Yang Guanxun Li Yan Zhong Qian Xu Yu-Te Lin Cristhian Roman-Vicharra Robert S Chapkin James J Cai Department of Electrical and Computer Engineering Texas A&M University College Station TX 77843 USA. Department of Statistics Texas A&M University College Station TX 77843 USA. Key Laboratory of Advanced Theory and Application in Statistics and Data Science-MOE School of Statistics East China Normal University 3663 North Zhongshan Road Shanghai 200062 China. Department of Veterinary Integrative Biosciences Texas A&M University College Station TX 77843 USA. Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan. Department of Nutrition and the Program in Integrative Nutrition & Complex Diseases Texas A&M University College Station TX 77843 USA. Electronic address: r-chapkin@tamu.edu. Department of Electrical and Computer Engineering Texas A&M University College Station TX 77843 USA Department of Veterinary Integrative Biosciences Texas A&M University College Station TX 77843 USA Interdisciplinary Program of Genetics Texas A&M University College Station TX 77843 USA. Electronic address: jcai@tamu.edu.

We present scTenifoldXct, a semi-supervised computational tool for detecting ligand-receptor (LR)-mediated cell-cell interactions and mapping cellular communication graphs. Our method is based on manifold alignment, using LR pairs as inter-data correspondences to embed ligand and receptor genes expressed in interacting cells into a unified latent space. Neural networks are employed to minimize the distance between corresponding genes while preserving the structure of gene regression networks. We apply scTenifoldXct to real datasets for testing and demonstrate that our method detects interactions with high consistency compared with other methods. More importantly, scTenifoldXct uncovers weak but biologically relevant interactions overlooked by other methods. We also demonstrate how scTenifoldXct can be used to compare different samples, such as healthy vs. diseased and wild type vs. knockout, to identify differential interactions, thereby revealing functional implications associated with changes in cellular communication status.

关键词： cell-cell interaction cellular communication gene regression network machine learning manifold alignment neural networks scRNA-seq single-cell RNA sequencing

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Correction: Liquid-capped encoded microcapsules for multiplex assays

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Lab on a chip 2017年第4期17卷 738页

作者： Younghoon Song Yunjin Jeong Taehong Kwon Daewon Lee Dong Yoon Oh Tae-Joon Park Junhoi Kim Jiyun Kim Sunghoon Kwon Institutes of Entrepreneurial BioConvergence Seoul National University Seoul 151-742 Republic of Korea. skwon@snu.ac.kr and Department of Electrical and Computer Science Seoul National University Seoul 151-742 Republic of Korea. Institutes of Entrepreneurial BioConvergence Seoul National University Seoul 151-742 Republic of Korea. skwon@snu.ac.kr and Interdisciplinary Program of Bioengineering Seoul National University Seoul 151-742 Republic of Korea. Nano Systems Institute Seoul National University Seoul 151-742 Republic of Korea. Department of Materials Science and Engineering Ulsan National Institute of Science and Technology Ulsan 44919 Republic of Korea. Institutes of Entrepreneurial BioConvergence Seoul National University Seoul 151-742 Republic of Korea. skwon@snu.ac.kr and Department of Electrical and Computer Science Seoul National University Seoul 151-742 Republic of Korea and Interdisciplinary Program of Bioengineering Seoul National University Seoul 151-742 Republic of Korea and Nano Systems Institute Seoul National University Seoul 151-742 Republic of Korea and Seoul National University Hospital Biomedical Research Institute Seoul National University Hospital Seoul 151-742 Republic of Korea and Quantamatrix Inc. Seoul 151-742 Republic of Korea.

Correction for 'Liquid-capped encoded microcapsules for multiplex assays' by Younghoon Song et al., Lab Chip, 2017, DOI: .

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Author Correction: Reconciliation of energy use disparities in brick production in India

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Nature Sustainability 2023年 1715页

作者： Kushal Tibrewal Chandra Venkataraman Harish Phuleria Anurag Gupta Pradnya Lokhande Veena Joshi Sameer Maithel Anand Damle Shahadev Rabha Binoy K. Saikia Sayantee Roy Gazala Habib Shubham Rathi Anubha Goel Sakshi Ahlawat Tuhin Kumar Mandal M. Azharuddin Hashmi Asif Qureshi Abisheg Dhandapani Jawed Iqbal Sandeep Devaliya Ramya Sunder Raman Yang Lian Govindan Pandithurai Sudheer Kumar Kuppili M. Shiva Nagendra Sauryadeep Mukherjee Abhijit Chatterjee Tanveer Ahmad Najar Arshid Jehangir Jitender Singh Baerbel Sinha Interdisciplinary Program in Climate Studies Indian Institute of Technology Bombay Mumbai India Pune Maharashtra India Greentech Knowledge Solutions Pvt. Ltd. New Delhi India De Boer Damle (India) Pvt. Ltd. Pune Maharashtra India Coal and Energy Division CSIR-North East Institute of Science and Technology Jorhat India Department of Civil Engineering Indian Institute of Technology Delhi Hauz Khas New Delhi India Department of Civil Engineering Indian Institute of Technology Kanpur Kanpur India Center on Global Change Environmental Sciences and Biomedical Metrology Division CSIR-National Physical Laboratory New Delhi India Department of Civil Engineering Indian Institute of Technology Hyderabad Hyderabad India Civil and Environmental Engineering Birla Institute of Technology Ranchi India Earth and Environmental Sciences Indian Institute of Science Education and Research Bhopal Bhopal India Indian Institute of Tropical Meteorology Pune Pune India Department of Civil Engineering Indian Institute of Technology Madras Chennai India Department of Environmental Sciences Bose Institute Kolkata India Department of Environmental Science University of Kashmir Srinagar Jammu and Kashmir India Department of Earth and Environmental Sciences Indian Institute of Science Education and Research Mohali Punjab India

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Corrigendum to "Variations of oxidative potential of PM2.5 in a medium-sized residential city in South Korea measured using three different chemical assays" [920 (2024) 171053]

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The Science of the total environment 2024年 926卷 172075页

作者： Pyung-Rae Kim Sung-Won Park Young-Ji Han Myong-Hwa Lee Thomas M Holsen Cheol-Heon Jeong Greg Evans Agriculture and Life Sciences Research Institute Kangwon National University Chuncheon Gangwon-do 24341 Republic of Korea. Dept. of Interdisciplinary Graduate Program in Environmental and Biomedical Convergence Kangwon National University Chuncheon Gangwon-do 24341 Republic of Korea. Dept. of Environmental Science Kangwon National University Chuncheon Gangwon-do 24341 Republic of Korea Gangwon particle pollution research and management center Kangwon National University Chuncheon Gangwon-do 24341 Republic of Korea. Electronic address: youngji@kangwon.ac.kr. Gangwon particle pollution research and management center Kangwon National University Chuncheon Gangwon-do 24341 Republic of Korea Dept. of Environmental Engineering Kangwon National University Chuncheon Gangwon-do 24341 Republic of Korea. Dept. of Civil and Environmental Engineering Clarkson University Potsdam NY 13699 USA. Dept. of Chemical Engineering and Applied Chemistry University of Toronto Toronto Ontario MS5 3E5 Canada.

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Author Correction: Battery-free, wireless soft sensors for continuous multi-site measurements of pressure and temperature from patients at risk for pressure injuries

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Nature communications 2021年第1期12卷 6827页

作者： Yong Suk Oh Jae-Hwan Kim Zhaoqian Xie Seokjoo Cho Hyeonseok Han Sung Woo Jeon Minsu Park Myeong Namkoong Raudel Avila Zhen Song Sung-Uk Lee Kabseok Ko Jungyup Lee Je-Sang Lee Weon Gi Min Byeong-Ju Lee Myungwoo Choi Ha Uk Chung Jongwon Kim Mengdi Han Jahyun Koo Yeon Sik Choi Sung Soo Kwak Sung Bong Kim Jeonghyun Kim Jungil Choi Chang-Mo Kang Jong Uk Kim Kyeongha Kwon Sang Min Won Janice Mihyun Baek Yujin Lee So Young Kim Wei Lu Abraham Vazquez-Guardado Hyoyoung Jeong Hanjun Ryu Geumbee Lee Kyuyoung Kim Seunghwan Kim Min Seong Kim Jungrak Choi Dong Yun Choi Quansan Yang Hangbo Zhao Wubin Bai Hokyung Jang Yongjoon Yu Jaeman Lim Xu Guo Bong Hoon Kim Seokwoo Jeon Charles Davies Anthony Banks Hyung Jin Sung Yonggang Huang Inkyu Park John A Rogers Center for Bio-Integrated Electronics Northwestern University Evanston IL USA. Department of Mechanical Engineering Korea Advanced Institute of Science and Technology Daejeon Republic of Korea. Department of Electrical and Computer Engineering University of Illinois at Urbana-Champaign Urbana IL USA. Department of Materials Science and Engineering University of Illinois at Urbana Champaign Urbana IL USA. Querrey Simpson Institute for Bioelectronics Northwestern University Evanston IL USA. State Key Laboratory of Structural Analysis for Industrial Equipment Department of Engineering Mechanics Dalian University of Technology Dalian People's Republic of China. Ningbo Institute of Dalian University of Technology Ningbo People's Republic of China. Department of Biomedical Engineering Texas A&M University College Station TX USA. Department of Mechanical Engineering Northwestern University Evanston IL USA. Advanced 3D Printing Technology Development Division Korea Atomic Energy Research Institute Daejeon Republic of Korea. Qualcomm Institute La Jolla CA USA. Sibel Health Inc Niles IL USA. Department of Rehabilitation Medicine Gimhae Hansol Rehabilitation & Convalescent Hospital Gimhae Republic of Korea. Department of Planning and Development Gimhae Hansol Rehabilitation & Convalescent Hospital Gimhae Republic of Korea. Department of Rehabilitation Medicine Pusan national university hospital Busan Republic of Korea. Department of Materials Science and Engineering KAIST Institute for The Nanocentury (KINC) Korea Advanced Institute of Science and Technology Daejeon Republic of Korea. Department of Materials Science and Engineering Northwestern University Evanston IL USA. Department of Mechanical Engineering Kyung Hee University Yongin Republic of Korea. Department of Biomedical Engineering College of Future Technology Peking University Beijing People's Republic of China. School of Biomedical Engineering Korea University Seoul Republic of Korea. Interdisci

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