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Predicting Genotype Information Related to COVID-19 for Molecular Mechanism Based on Computational Methods

Computer Modeling in Engineering & Sciences 2021年第10期129卷 31-45页

作者： Lejun Gong Xingxing Zhang Li Zhang Zhihong Gao Jiangsu Key Laboratory of Big Data Security&Intelligent Processing School of Computer Science Nanjing University of Posts and TelecommunicationsNanjing210046China Smart Health Big Data Analysis and Location Services Engineering Laboratory of Jiangsu Province Nanjing210046China College of Computer Science and Technology Nanjing Forestry UniversityNanjing210037China Zhejiang Engineering Research Center of Intelligent Medicine Wenzhou325035China

Novel coronavirus disease 2019(COVID-19)is an ongoing health *** studies are related to ***,its molecular mechanism remains *** rapid publication of COVID-19 provides a new way to elucidate its mechanism through computational *** paper proposes a prediction method for mining genotype information related to COVID-19 from the perspective of molecular mechanisms based on machine *** method obtains seed genes based on prior *** genes are mined from biomedical *** candidate genes are scored by machine learning based on the similarities measured between the seed and candidate ***,the results of the scores are used to perform functional enrichment analyses,including KEGG,interaction network,and Gene Ontology,for exploring the molecular mechanism of *** results show that the method is promising for mining genotype information to explore the molecular mechanism related to COVID-19.

关键词： COVID-19 SARS-CoV-2 computational method bioinformatics genotype machine learning

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Complex Substation Scene Segmentation Method Based on Optimized Straight Line Detection

Complex Substation Scene Segmentation Method Based on Optimi...

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2023 China Automation Congress, CAC 2023

作者： Wang, Lei Huang, Wei Chen, Yiping Chen, Hao Liu, Chuang Yin, Jun School of Computer Nanjing University of Posts and Telecommunications Nanjing210023 China Jiangsu Key Laboratory of Big Data Security and Intelligent Processing Nanjing210023 China School of Internet of Things Nanjing University of Posts and Telecommunications Nanjing210023 China

ISBN: (纸本)9798350303759

This paper proposes a scene segmentation method based on optimized line detection to address the difficulty of segmenting spatially independent equipment in complex substation scenes. The method first employs the RANSAC method to simulate the ground plane and extract the ground point cloud. Then, it projects the 3D point cloud scene onto a 2D plane to obtain a 2D image of the substation. Straight line segments of the power line are extracted from the image using the edge detection algorithm and an improved line detection algorithm. The straight line segments that do not belong to the power line are filtered out using the surrounding features of the 3D point corresponding to the 2D point on the line. The power line's straight line segment is extended using the region-growing algorithm. Finally, the power line clustering is completed using European clustering based on the three-dimensional coordinates of the two ends of the power line, thereby completing the scene segmentation. Experimental results show that the proposed method can effectively segment substation equipment. Compared to traditional segmentation methods, this method has an average power line identification accuracy of 14% higher. © 2023 IEEE.

关键词： Edge detection

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MDPFL:A Multiple Differential Privacy Protection Method based on Federated Learning

MDPFL:A Multiple Differential Privacy Protection Method base...

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International Conference on Computer Supported Cooperative Work in Design

作者： Xinyu Liu Xiaolong Xu Jiangsu Key Laboratory of Big Data Security & Intelligent Processing Nanjing University of Posts and Telecommunications Nanjing China

With the continuous development of artificial intelligence technology, machine learning in distributed network systems, such as IoVflntemet of Vehicles), will inevitably lead to privacy leakage. At present, there are lots of problems in federated learning, differential privacy and other machine learning privacy protection schemes, such as high loss of availability and the need of a fully trusted third-party server. In order to solve these problems, we propose MDPFL(Multiple Differential Privacy based on Federated Learning) algorithm. The algorithm combines with the differential privacy model in each stage of federated learning to solve the problem of curious third-party data collectors obtaining users’ original data in the process of machine learning. Meanwhile, the algorithm does not adopt a decentralized machine learning scheme directly, but uses a double noise adding mode with the existence of the third-party data collectors. We use Laplacian mechanism in the central server and GRR mechanism in local clients to ensure the goal of stability of the effect of the machine ¡earning model. The algorithm is compared with FedAvg, CDP, LDP algorithm in accuracy and loss rate which based on EMNIST data sets. In different global sensitivities, the model training effect is consistent with FedAvg algorithm while comparing with LDP algorithm, the speed of model convergence is improved.

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SNNLog: A Log Parsing Scheme with Siamese Network and Fixed Depth Tree in Networks

SNNLog: A Log Parsing Scheme with Siamese Network and Fixed ...

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International Conference on Computer Supported Cooperative Work in Design

作者： Lei Sun Xiaolong Xu Jiangsu Key Laboratory of Big Data Security & Intelligent Processing Nanjing University of Posts and Telecommunications Nanjing China

Syslog records critical information of network when the system is running, and has been used to help practitioners carry out various network maintenance and operation activities. Because of abundance of syslog, automated log analysis technology is needed to complete the above activities. Usually, log parsing is an important part of log analysis. Previous log parsing methods have good achievements, but they heavily rely on well-designed regular expressions and ignore semantic information of log. To solve these problems, we propose a novel log parsing method SNNLog, which uses Siamese Network to assess the similarity between log messages, and the similarity is used for the subsequent parsing. In addition, after parsing, SNNLog merges log similar events, reducing the misjudgment rate caused by non-numeric token variables at the beginning of messages. We evaluated on five publicly accessible log datasets and the results show that compared with SOTA algorithms such as LogMine, Spell, Drain and MoLFI, SNNLog has an F1-score of 0.999 on five datasets, and parsing accuracy of four datasets is the highest.

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Recognition of Disaster Images Based on Self-Supervised Learning 7

Recognition of Disaster Images Based on Self-Supervised Lear...

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7th International Conference on Cloud Computing and big data Analytics, ICCCBDA 2022

作者： Wang, Linyong Wu, Ruiqi Li, Cen Zou, Zhiqiang Nanjing University of Posts and Telecommunications NanJing China College of Computer Nanjing University of Posts and Telecommunications Jiangsu Key Laboratory of Big Data Security and Intelligent Processing NanJing China

ISBN: (纸本)9781665487115

Existing supervised deep learning model requires large amounts of labeled training data to learn new tasks. This is a limitation for many practical applications in disaster areas as well as in many other fields such as medical domain, where numerous labour and time are required to label datasets. According to our literature survey, there is few self-supervised learning model with high accuracy for image recognition about natural disasters. This paper proposed a self-supervised learning model for disaster image recognition based on MoCo model, called MoCo-Q, including image preprocessing, model training and transfer learning after fine-Tuning. After being trained by learning a couple of features of disaster images without artificial labels, the trained neural network is applied to downstream tasks, which achieves the recognition of a large number of disaster images at a high accuracy without the manual intervention and labeling. With the implement of the MoCo-Q, images of natural disasters can be quickly recognized without manual labeling. The work can provide scientific decision-making support for the government and it is of great significance for natural disaster assessment and disaster relief. Finally, experiments on real-world natural disaster datasets, CrisisMMD and ASONAM17, are performed, and we compared with the state-of-The-Art supervised method (ResNet50) that uses same datasets. The result presents that the accuracy of the MoCo-Q (91.56%) is 5.71% higher than that of the supervised learning model (85.85%). © 2022 IEEE.

关键词： Training Image recognition Neural networks Transfer learning Supervised learning Training data Manuals

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A Network Fault Prediction-Based Service Migration Approach for Unstable Mobile Edge Environment

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Wireless Communications and Mobile Computing 2023年第1期2023卷

作者： Wang, Haiyan Tang, Weihao Luo, Jian Jiangsu Key Laboratory of Big Data Security and Intelligent Processing Nanjing University of Posts and Telecommunications Nanjing China

How to perform efficient service migration in a mobile edge environment has become one of the research hotspots in the field of service computing. Most service migration approaches assume that the mobile edge network on which the migration depends is stable. However, in practice, these networks often fluctuate greatly due to the fault of edge devices, resulting in unexpected service interruptions during the migration process. Besides, most of the existing solutions do not consider the migration cost and path selection in the event of edge network fault. Aiming at the above problems, we propose a service migration approach based on network fault prediction (SMNFP) for mobile edge environment. The SMNFP method first introduces the software-defined network as a global controller, which is used to monitor and collect the changing of the edge network and schedule the migration tasks. Second, a network fault prediction model based on Wide&Deep model is proposed to predict the upcoming faults in the network according to the alarm information of network equipment. Finally, the service migration problem is constructed as a Markov decision process, and a fault penalty function is introduced to avoid faulty nodes, together with the deep Q-learning method to solve the migration strategy. Simulation experiments are conducted on the public metro network fault dataset, and results show the proposed method can effectively predict network faults and complete service migration. Copyright © 2023 Haiyan Wang et al.

关键词： Markov processes

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Economical Electricity Supplement for Mobile Collectors in Large-Scale Multitask WSNs

Economical Electricity Supplement for Mobile Collectors in L...

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IEEE International Conference on big data and Cloud Computing (BdCloud)

作者： Xin Zhai Lijie Xu Jialei Zhang Kun Wang Jia Xu Bei Xu Jiangsu Key Laboratory of Big Data Security and Intelligent Processing Nanjing University of Posts and Telecommunications Nanjing China

For large-scale multitask wireless sensor networks (LSM-WSNs), the traditional data collection mode could suffer low energy-efficiency on data transmission, since the large-scale multitask scenarios could result in much higher packet collision probability, especially for harsh environments. Mobile data collection is an efficient data acquisition way to prolong network lifetime for LSM-WSNs. However, the mobile collectors could suffer electricity shortage problem, since the limited battery capacity of any mobile collector could not afford the energy consumption of its long-distance movement and massive data collection in large-scale multitask scenarios. Deploying wireless chargers to supplement the energy of mobile collectors is a feasible solution to electricity shortage problem, but will incur extra charger deployment cost. In this paper, we focus on the problem that how to optimize such charger deployment cost, which is NP-hard. By transforming it into minimum-cost submodular cover problem, we devise an efficient approximation algorithm with a provable approximation ratio. The extensive simulation results reveal that our solution always outperforms the other solutions under whatever configurations.

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An Answer Summarization Scheme Based on Multilayer Attention Model

An Answer Summarization Scheme Based on Multilayer Attention...

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International Conference on Computer Supported Cooperative Work in Design

作者： Xiaolong Xu Yihao Dong Jian Song Jiangsu Key Laboratory of Big Data Security & Intelligent Processing Nanjing University of Posts and Telecommunications Nanjing China

At present, deep learning technologies have been widely used in the field of natural language process, such as text summarization. In CQA, the answer summary could help users get a complete answer quickly. There are still some problems with the current answer summary scheme, such as semantic inconsistency, repetition of words, etc. In order to solve this, we propose a novel scheme Answer Summarization based on Multi-layer Attention Scheme (ASMAM). Based on the traditional Seq2Seq, we introduce self-attention and multi-head attention scheme respectively during sentence and text encoding, which could improve text representation ability of the model. In order to solve "long distance dependence" of RNN and too many parameters of LSTM, we all use GRU as the neuron at the encoder and decoder sides. Experiments over the Yahoo! Answers dataset demonstrate that the coherence and fluency of the generated summary are all superior to the benchmark model in ROUGE evaluation system.

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SSR-TA: Sequence to Sequence based expert recurrent recommendation for ticket automation

arXiv

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arXiv 2023年

作者： Cao, Chenhan Fang, Xiaoyu Luo, Bingqing Xia, Bin Jiangsu Key Laboratory of Big Data Security and Intelligent Processing Nanjing University of Posts and Telecommunications Nanjing China

The ticket automation provides crucial support for the normal operation of IT software systems. An essential task of ticket automation is to assign experts to solve upcoming tickets. However, facing thousands of tickets, inappropriate assignments will make tickets transfer frequently among experts, which causes time delays and wasted resources. Effectively and efficiently finding an appropriate expert in fewer steps is vital to ticket automation. In this paper, we proposed a sequence to sequence based translation model combined with a recurrent recommendation network to recommend appropriate experts for tickets. The sequence to sequence model transforms the ticket description into the corresponding resolution for capturing the potential and useful features of representing tickets. The recurrent recommendation network recommends the appropriate expert based on the assumption that the previous expert in the recommendation sequence cannot solve the expert. To evaluate the performance, we conducted experiments to compare several baselines with SSR-TA on two real-world datasets, and the experimental results show that our proposed model outperforms the baselines. The comparative experiment results also show that SSR-TA has a better performance of expert recommendations for user-generated tickets. Copyright © 2023, The Authors. All rights reserved.

关键词： Automation

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Dlr: Adversarial Examples Detection and Label Recovery for Deep Neural Networks

SSRN

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SSRN 2023年

作者： Han, Keji Ge, Yao Wang, Ruchuan Li, Yun Jiangsu Key Laboratory of Big Data Security & Intelligent Processing Nanjing University of Posts and Telecommunications Jiangsu Nanjing210023 China

Deep neural networks (DNNs) are demonstrated to be vulnerable to the adversarial example crafted by the adversary to fool the target model. Adversarial training and adversarial example detection are two popular methods to mitigate the adversarial issue. The adversarial training makes the target model recognize the adversarial example correctly for the image classification task, while it does not generalize well. The adversarial detection generalizes well but cannot help the target model recognize the adversarial example. We first define the label recovery task to address the adversarial issue for DNNs. Then we propose a new generative classifier and apply it to the adversarial example label recovery task. The proposed method is named as Detection and Label Recovery (DLR) defense method, which consists of Detector and Recover. Detector feeds the legitimate and adversarial examples to the target model and Recover, respectively. The Recover explores the ground-truth label of the detected adversarial example. DLR combines the merits of adversarial training and adversarial example detection. Experimental results demonstrate that our method outperforms some state-of-the-art adversarial training methods. © 2023, The Authors. All rights reserved.

关键词： Anomaly detection

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