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A Method for Extracting Electronic Medical Record Entities by Fusing Multichannel Self-Attention Mechanism with Location Relationship Features 9th

A Method for Extracting Electronic Medical Record Entities b...

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9th International Conference of Pioneering Computer Scientists, Engineers and Educators, ICPCSEE 2023

作者： Xu, Hongyan Wang, Hong Feng, Yong Wang, Rongbing Zhang, Yonggang College of Information Liaoning University Shenyang110036 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China

ISBN: (纸本)9789819959709

With the implementation of the "Internet+" strategy, electronic medical records are generally applied in the medical field. Deep mining of electronic medical record content data is an effective means to obtain medical knowledge and analyse patients’ states, but the existing methods for extracting entities from electronic medical records have problems of redundant information, overlapping entities, and low accuracy rates. Therefore, this paper proposes an entity extraction method for electronic medical records based on the network framework of BERT-BiLSTM, which incorporates a multichannel self-attention mechanism and location relationship features. First, the text input sequence was encoded using the BERT-BiLSTM network framework, and the global semantic information of the sentence was mined more deeply using the multichannel self-attention mechanism. Then, the position relation characteristic was used to extract the local semantic message of the text, and the position relation characteristic of the word and the position embedding matrix of the whole sentence were obtained. Next, the extracted global semantic information was stitched with the positional embedding matrix of the sentence to obtain the current entity classification matrix. Finally, the proposed method was validated on the dataset of Chinese medical text entity relationship extraction and the 2010i2b2/VA relationship corpus, and the experimental results indicate that the proposed method surpasses existing methods in terms of precision, recall, F1 value and training time. © 2023, The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

关键词： Location

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Positive and Unlabeled Learning with Controlled Probability Boundary Fence 41

Positive and Unlabeled Learning with Controlled Probability ...

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41st International Conference on Machine Learning, ICML 2024

作者： Li, Changchun Dai, Yuanchao Feng, Lei Li, Ximing Wang, Bing Ouyang, Jihong College of Computer Science and Technology Jilin University China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University China Information Systems Technology and Design Pillar Singapore University of Technology and Design Singapore

Positive and Unlabeled (PU) learning refers to a special case of binary classification, and technically, it aims to induce a binary classifier from a few labeled positive training instances and loads of unlabeled instances. In this paper, we derive a theorem indicating that the probability boundary of the asymmetric disambiguation-free expected risk of PU learning is controlled by its asymmetric penalty, and we further empirically evaluated this theorem. Inspired by the theorem and its empirical evaluations, we propose an easy-to-implement two-stage PU learning method, namely Positive and Unlabeled Learning with Controlled Probability Boundary Fence (PUL-CPBF). In the first stage, we train a set of weak binary classifiers concerning different probability boundaries by minimizing the asymmetric disambiguation-free empirical risks with specific asymmetric penalty values. We can interpret these induced weak binary classifiers as a probability boundary fence. For each unlabeled instance, we can use the predictions to locate its class posterior probability and generate a stochastic label. In the second stage, we train a strong binary classifier over labeled positive training instances and all unlabeled instances with stochastic labels in a self-training manner. Extensive empirical results demonstrate that PUL-CPBF can achieve competitive performance compared with the existing PU learning baselines. Copyright 2024 by the author(s)

关键词： Contrastive Learning

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A novel hybrid butterfly optimization algorithm for feature selection with sine cosine velocity in the high-dimensional classification data

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Journal of Intelligent and Fuzzy Systems 2024年第5-6期47卷 369-391页

作者： Zhang, Li Chen, Xiaobo Key Laboratory of Data Science and Intelligence Education Hainan Normal University Ministry of Education Haikou Hainan China School of Computer Engineering Jiangsu University of Technology Changzhou Jiangsu China Changzhou City Center Branch People's Bank of China Changzhou Jiangsu China Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University Changchun China

Aiming at the shortcomings of the traditional butterfly optimization algorithm in solving the high-dimensional classification feature selection problem, which has low convergence and is prone to fall into local optimal solutions, a new hybrid butterfly optimization algorithm is proposed, i.e., HBOA-SCV (A novel hybrid butterfly optimization algorithm with sine cosine velocity). The algorithm is applied to solve a high-dimensional classification feature selection problem. Firstly, the algorithm's global exploration and local exploitation ability can be dynamically balanced by introducing inertia weight coefficients w based on multiple learning strategies. Secondly, using the updated speed position formula of the sine-cosine acceleration strategy, individual butterflies' autonomous search ability and convergence speed can be further improved. Finally, according to the fitness value of each butterfly individual, the moving step length and direction of the butterfly individual are automatically adjusted better to fit the actual search process of the butterfly individual, increase the search ability in the global range, and avoid the algorithm from falling into the local optimum. To verify the algorithm's effectiveness, 18 high-dimensional classification numbers are selected to carry out simulation and comparison experiments between HBOA-SCV and traditional BOA algorithm, five improved BOA algorithms and other comparative algorithms for high-dimensional classification data successively. The experimental results show that the average fitness value and classification accuracy of the HBOA-SCV algorithm are better than the comparison algorithm, thus verifying the superiority of the HBOA-SCV algorithm. © 2024 - IOS Press. All rights reserved.

关键词： Optimization algorithms

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An embedded vertical‐federated feature selection algorithm based on particle swarm optimisation

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CAAI Transactions on Intelligence Technology 2023年第3期8卷 734-754页

作者： Yong Zhang Ying Hu Xiaozhi Gao Dunwei Gong Yinan Guo Kaizhou Gao Wanqiu Zhang School of Information and Control Engineering China University of Mining and TechnologyXuzhouChina The Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchunChina School of Computing University of Eastern FinlandKuopioFinland The Macao Institute of Systems Engineering Macao University of Science and TechnologyTaipaChina

In real life,a large amount of data describing the same learning task may be stored in different institutions(called participants),and these data cannot be shared among par-ticipants due to privacy *** case that different attributes/features of the same instance are stored in different institutions is called vertically distributed *** pur-pose of vertical‐federated feature selection(FS)is to reduce the feature dimension of vertical distributed data jointly without sharing local original data so that the feature subset obtained has the same or better performance as the original feature *** solve this problem,in the paper,an embedded vertical‐federated FS algorithm based on particle swarm optimisation(PSO‐EVFFS)is proposed by incorporating evolutionary FS into the SecureBoost framework for the first *** optimising both hyper‐parameters of the XGBoost model and feature subsets,PSO‐EVFFS can obtain a feature subset,which makes the XGBoost model more *** the same time,since different participants only share insensitive parameters such as model loss function,PSO‐EVFFS can effec-tively ensure the privacy of participants'***,an ensemble ranking strategy of feature importance based on the XGBoost tree model is developed to effectively remove irrelevant features on each ***,the proposed algorithm is applied to 10 test datasets and compared with three typical vertical‐federated learning frameworks and two variants of the proposed algorithm with different initialisation ***-mental results show that the proposed algorithm can significantly improve the classifi-cation performance of selected feature subsets while fully protecting the data privacy of all participants.

关键词： Evolutionary optimization feature selection privacy protection vertical‐federated learning

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A Sparse Optical Flow Method for Camera Tracking under Fisheye Camera Models 5

A Sparse Optical Flow Method for Camera Tracking under Fishe...

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5th International Conference on Frontiers Technology of Information and Computer, ICFTIC 2023

作者： Zhang, Zuoming Wang, Xin College of Computer Science and Technology Jilin China College of Computer Science and Technology Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin China

ISBN: (纸本)9798350309034

In computer image processing, optical flow is a classic task used to track the motion of pixels. In the field of robotics, methods like SLAM extensively employ sparse optical flow as a substitute for time-consuming feature point matching methods, enabling rapid and stable camera tracking. However, the widespread use of fisheye cameras introduces distortion issues in practical applications. Traditional sparse optical flow struggles to accurately track pixel positions in such scenarios, affecting the precision of camera pose tracking. Therefore, we introduce a sparse optical flow method designed for fisheye camera models, which correctly utilizes prior information obtained during camera tracking to enhance the accuracy of sparse optical flow. Finally, we propose a scheme for constructing a semi-distortion lookup table to accelerate distortion operations and reduce memory requirements. We conducted extensive testing on simulated datasets with various camera motion scenarios, and the experimental results demonstrate that our method outperforms OpenCV in terms of accuracy and versatility. © 2023 IEEE.

关键词： camera tracking component distortion fisheye camera model optical flow

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Spatiotemporal Transformer for Data Inference and Long Prediction in Sparse Mobile CrowdSensing 42

Spatiotemporal Transformer for Data Inference and Long Predi...

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42nd IEEE International Conference on Computer Communications, INFOCOM 2023

作者： Wang, En Liu, Weiting Liu, Wenbin Xiang, Chaocan Yang, Bo Yang, Yongjian Jilin University College of Computer Science and Technology China Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education China Chongqing University College of Computer Science China

ISBN: (纸本)9798350334142

Mobile CrowdSensing (MCS) is a data sensing paradigm that recruits users carrying mobile terminals to collect data. As its variant, Sparse MCS has been further proposed for large-scale and fine-grained sensing task with the advantage of collecting only a few data to infer unsensed data. However, in many real-world scenarios, such as early prevention of epidemic, people are interested in not only the data at the current, but also in the future or even long-term future, and the latter may be more important. Long-term prediction not only reduces sensing cost, but also identifies trends or other characteristics of the data. In this paper, we propose a spatiotemporal model based on Transformer to infer and predict the data with sparse sensed data by utilizing spatiotemporal relationships. We design a spatiotemporal feature embedding to embed the prior spatiotemporal information of sensing map into the model to guide model learning. Moreover, we also design a novel multi-head spatiotemporal attention mechanism to dynamically capture spatiotemporal relationships among data. Extensive experiments have been conducted on three types of typical urban sensing tasks, which verify the effectiveness of our proposed algorithms in improving the inference and long-term prediction accuracy with the sparse sensed data. © 2023 IEEE.

关键词： Forecasting

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FlexPDA:A Flexible Programming Framework for Deep Learning Accelerators

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Journal of Computer Science & Technology 2022年第5期37卷 1200-1220页

作者： Lei Liu Xiu Ma Hua-xiao Liu Guang-li Li Lei Liu College of Computer Science and Technology Jilin UniversityChangchunChina Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchunChina State Key Laboratory of Computer Architecture Institute of Computing TechnologyChinese Academy of SciencesBeijingChina University of Chinese Academy of Sciences BeijingChina

There are a wide variety of intelligence accelerators with promising performance and energy efficiency,deployed in a broad range of applications such as computer vision and speech ***,programming productivity hinders the deployment of deep learning *** low-level library invoked in the high-level deep learning framework which supports the end-to-end execution with a given model,is designed to reduce the programming burden on the intelligence ***,it is inflexible for developers to build a network model for every deep learning application,which probably brings unnecessary repetitive *** this paper,a flexible and efficient programming framework for deep learning accelerators,FlexPDA,is proposed,which provides more optimization opportunities than the low-level library and realizes quick transplantation of applications to intelligence accelerators for fast *** evaluate FlexPDA by using 10 representative operators selected from deep learning algorithms and an end-to-end *** experimental results validate the effectiveness of FlexPDA,which achieves an end-to-end performance improvement of 1.620x over the low-level library.

关键词： deep learning accelerator programming framework domain-specific language

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Strengthened Initialization of Adaptive Cross-Generation Differential Evolution

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Computer Modeling in engineering & Sciences 2022年第3期130卷 1495-1516页

作者： Wei Wan Gaige Wang Junyu Dong Department of Computer Science of Technology Ocean University of ChinaQingdao266100China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchun130012China Guangxi Key Laboratory of Hybrid Computation and IC Design Analysis Guangxi University for NationalitiesNanning530006China

Adaptive Cross-Generation Differential Evolution(ACGDE)is a recently-introduced algorithm for solving multiobjective problems with remarkable performance compared to other evolutionary algorithms(EAs).However,its convergence and diversity are not satisfactory compared with the latest *** order to adapt to the current environment,ACGDE requires improvements in many aspects,such as its initialization and mutant *** this paper,an enhanced version is proposed,namely *** incorporates a strengthened initialization strategy and optimized parameters in contrast to its *** improvements make the direction of crossgeneration mutation more clearly and the ability of searching more *** experiments show that the new algorithm has better diversity and improves convergence to a certain *** the same time,SIACGDE outperforms other state-of-the-art algorithms on four metrics of 24 test problems.

关键词： Differential Evolution(DE) multi-objective optimization(MO) opposition-based learning parameter adaptation

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SMRI: A New Method for siRNA Design for COVID-19 Therapy

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Journal of Computer Science & Technology 2022年第4期37卷 991-1002页

作者： Meng-Xin Chen Xiao-Dong Zhu Hao Zhang Zhen Liu Yuan-Ning Liu College of Software Jilin UniversityChangchun 130012China Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education Jilin UniversityChangchun 130012China College of Computer Science and Technology Jilin UniversityChangchun 130012China Graduate School of Engineering Nagasaki Institute of Applied ScienceNagasaki 851-0193Japan

First discovered in Wuhan, China, SARS-CoV-2 is a highly pathogenic novel coronavirus, which rapidly spreads globally and becomes a pandemic with no vaccine and limited distinctive clinical drugs available till March 13th, 2020. Ribonucleic Acid interference (RNAi) technology, a gene-silencing technology that targets mRNA, can cause damage to RNA viruses effectively. Here, we report a new efficient small interfering RNA (siRNA) design method named Simple Multiple Rules Intelligent Method (SMRI) to propose a new solution of the treatment of COVID-19. To be specific, this study proposes a new model named Base Preference and Thermodynamic Characteristic model (BPTC model) indicating the siRNA silencing efficiency and a new index named siRNA Extended Rules index (SER index) based on the BPTC model to screen high-efficiency siRNAs and filter out the siRNAs that are difficult to take effect or synthesize as a part of the SMRI method, which is more robust and efficient than the traditional statistical indicators under the same circumstances. Besides, to silence the spike protein of SARS-CoV-2 to invade cells, this study further puts forward the SMRI method to search candidate high-efficiency siRNAs on SARS-CoV-2's S gene. This study is one of the early studies applying RNAi therapy to the COVID-19 treatment. According to the analysis, the average value of predicted interference efficiency of the candidate siRNAs designed by the SMRI method is comparable to that of the mainstream siRNA design algorithms. Moreover, the SMRI method ensures that the designed siRNAs have more than three base mismatches with human genes, thus avoiding silencing normal human genes. This is not considered by other mainstream methods, thereby the five candidate high-efficiency siRNAs which are easy to take effect or synthesize and much safer for human body are obtained by our SMRI method, which provide a new safer, small dosage and long efficacy solution for the treatment of COVID-19.

关键词： COVID-19 SARS-CoV-2 RibonucleicAcid interference

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2D-3D Feature Co-Embedding Network with Sparse Annotation for 3D Medical Image Segmentation

2D-3D Feature Co-Embedding Network with Sparse Annotation fo...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Zhu, Mingzhu Guo, Shuyu Wang, Ziwei Jiao, Jianhang Bai, Tian Jilin University College of Computer Science and Technology Changchun China Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Changchun China Jilin University College of Software Changchun China The Second Norman Bethune Hospital Jilin University Department of Orthopedics Changchun China

ISBN: (纸本)9798350386226

Supervised methods on 3D medical image segmentation need large amounts of annotated data, but annotating is time-consuming. Also, existing 3D segmentation methods capture more global structural information but overlook local detailed features, which negatively impacts the segmentation of small tissues. In this paper, we propose a novel weakly-supervised 2D-3D Feature Co-Embedding Network (2D-3D CoENet) that includes 2D and 3D encoding layers, simultaneously extracting 2D local detailed and 3D global structural features. To reduce annotation costs, we use fewer labeled slices as ground truth and pseudo-labels are generated by 2D-3D CoENet for other slices. Additionally, multi-view learning is introduced to capture more 2D local detailed information, and a Multi-view Semantic Consistency loss (MSC loss) is proposed to constrain features from multiple perspectives. To further enhance the local detailed texture features, we propose an Edge Enhancement Module (EEM) in the 3D segmentation network to enhance the edge detail features. Our experimental results on the SKI10 dataset and OAI ZIB dataset demonstrate that our method outperforms the SOTA weakly-supervised segmentation methods. Moreover, our approach achieves results that are comparable to the fully-supervised upper bound results. © 2024 IEEE.

关键词： Medical imaging

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