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A novel method for the construction of evolutionary tree based on expectation maximization algorithm

Journal of Computational and Theoretical Nanoscience 2016年第6期13卷 3799-3803页

作者： Chen, Zhihua Zhao, Yang Wang, Zhuo Kou, Zheng Li, Hanggao Key Lab. of Image Processing and Intelligent Control Department of Control Science and Engineering Huazhong University of Science and Technology Wuhan Hubei430074 China Institute of Biomedical and Pharmaceutical Sciences College of Biological Engineering and Food Science Hubei University of Technology Wuhan Hubei430068 China College of Computer Science South-Central University for Nationalities Wuhan Hubei430074 China

The difference of protein sequence or protein structure can be used for the construction of molecular evolutionary tree or phytogenetic tree with certain hierarchy and topology. The divergent points in the tree suggest that new genes appeared or common ancestors varied. The lengths of the branch in the tree show the evolution distances between proteins when divergences happened. The analysis of protein evolution can propose some methods for molecular evolution of various species and can confirm the accurate status in the evolution history. Moreover, the molecular evolution tree of proteins is a strong evidence for species classification. In the paper, the trees are constructed by the regular express of protein sequences and the expectation maximization (EM) algorithm. The proposed method in the paper can be used conveniently and can give reliable results, which benefit the biology computing and sequence analysis. Copyright © 2016 American Scientific Publishers. All rights reserved.

关键词： Proteins

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Indoor Localization with Incomplete Observation Using Set-membership Filter

Indoor Localization with Incomplete Observation Using Set-me...

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International Symposium on Micro-NanoMechatronics and Human Science

作者： Yuan Wang Jian Huang Key Lab of Image Processing and Intelligent Control School of Automation Huazhong University of Science and Technology

ISBN: (纸本)9781467382182

Indoor localization is a popular topic because of the poor performance of GPS in the indoor environment. This paper has provided a new method to achieve the goal of indoor localization. Combining the usage of posture sensors with the Radio Frequency Identification (RFID) technology, we solved the problem of plentiful tags in the traditional RFID indoor localization. The relative localization subsystem is based on posture sensors and the absolute localization subsystem is based on RFID. A set-membership theory based data fusion algorithm is proposed to fuse the data of relative localization and absolute localization. Experimental results show that the proposed data fusion algorithm could significantly reduce the accumulated error of our indoor localization system.

关键词： Ellipsoids Indoor environments RFID tags Filtering theory Filtering algorithms

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Deterministic-like data-driven discovery of stochastic differential equations via the Feynman–Kac formalism

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The European Physical Journal Special Topics 2024年 1-21页

作者： Ma, Chaoxiang Huang, Cheng Cheng, Cheng Li, Xiuting The College of Informatics Huazhong Agriculture University and the China–Poland Belt and Road Joint Laboratory on Measurement and Control Technology Huazhong University of Science and Technology Wuhan People’s Republic of China School of Artificial Intelligence and Automation Huazhong University of Science and Technology Ministry of Education Key Lab of Intelligent Control and Image Processing Wuhan China

This paper develops a data-driven deterministic identification architecture for discovering stochastic differential equations (SDEs) directly from data. The architecture first generates deterministic data for stochastic processes using the Feynman–Kac formula, and gives a parabolic partial differential equation (PDE) associated with the SDE. Then, a sparse regression model is proposed to discover drift and diffusion terms in SDEs using PDE data-driven techniques, where a large candidate library of potential terms only for the drift and diffusion coefficients in SDEs need be constructed. To simultaneously infer the drift and diffusion terms, we proposed a sequential thresholded reweighted least-squares algorithm to solve the constructed sparse regression model. The main advantage of the proposed method is that on the one hand, theoretical and numerical identification results of PDEs can be used for SDEs, on the score, our SDE identification problem is translated into the parameter estimation problem of PDEs, on the other hand, the proposed algorithm is easily executed and can enhance the sparsity and accuracy. Through several classical SDEs and ordinary differential equations, the effectiveness of the proposed data-driven method is demonstrated, and several comparison experiments with state-of-the-art approaches is provided to illustrate the superiority of the developed algorithm.

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Measures of the brain functional network that correlate with Alzheimer's neuropsychological test scores: An fMRI and graph analysis study

Measures of the brain functional network that correlate with...

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Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Soroosh Golbabaei Amin Dadashi Hamid Soltanian-Zadeh Control and Intelligent Processing Center of Excellence (CIPCE) University of Tehran Tehran Iran School of Cognitive Sciences Institute for Research in Fundamental Sciences (IPM) Tehran Iran Department of Radiology Medical Image Analysis Lab. Detroit Michigan USA

Neural degeneration in Alzheimer's disease (AD) leads to structural topology deformation that in turn changes brain functionality. The main aim of the present study is to find the brain's functional connectivity network (FCN) correlates of Alzheimer's psychological test scores. To this end, the brain's FCN is extracted from the resting state functional magnetic resonance images (rs-fMRI) of healthy controls and patients with AD and represented as a graph. Then, network measures are calculated from the graphs. The correlations between the brain network measures and five AD psychological assessment test scores are evaluated. The results show positive correlation between the Mini-Mental State Examination (MMSE) and nodal strength in the left insula and negative correlation between the Clinical Dementia Rating (CDR) score and local efficiency of left olfactory cortex and also eigenvector centrality of left supramarginal cortex. The Neuropsychiatric Inventory Questionnaire (NPI-Q) also seems to be correlated with network measures of the left superior parietal gyrus. Moreover, notable decreased continuity are spotted in the limbic system. These measures can be used to provide an objective tool for AD diagnosis.

关键词： Correlation Alzheimer's disease Psychology Olfactory Brain Atmospheric measurements

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Single channel speech separation with a frame-based pitch range estimation method in modulation frequency

2010 5th International Symposium on Telecommunications, IST ...

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2010 5th International Symposium on Telecommunications, IST 2010 2010年 609-613页

作者： Mahmoodzadeh, A. Abutalebi, H.R. Soltanian-Zadeh, H. Sheikhzadeh, H. Speech Proc. Research Lab. ECE Dept. Yazd University Iran Control and Intelligent Processing Center of Excellence University of Tehran Iran EE Dept. Amirkabir University of Technology Tehran Iran Idiap Research Institute Martigny Switzerland Image Analysis Lab. Henry Ford Health System Detroit United States

ISBN: (纸本)9781424481835

Computational Auditory Scene Analysis (CASA) has attracted a lot of interest in segregating speech from monaural mixtures. In this paper, we propose a new method for single channel speech separation with frame-based pitch range estimation in modulation frequency domain. This range is estimated in each frame of modulation spectrum of speech by analyzing onsets and offsets. In the proposed method, target speaker is separated from interfering speaker by filtering the mixture signal with a mask extracted from the modulation spectrogram of mixture signal. Systematic evaluation shows an acceptable level of separation comparing with classic methods. © 2010 IEEE.

关键词： Frequency estimation

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A Pilot Study of Relating MYCN-Gene Amplification with Neuroblastoma-Patient CT Scans

arXiv

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arXiv 2022年

作者： Zhang, Zihan Xiang, Xiang Peng, Xuehua Shao, Jianbo MoE Key Lab of Image Info Processing & Intelligent Control School of Artificial Intelligence & Automation China Wuhan Children's Hospital Tongji Medical College China Huazhong University of Science and Technology Wuhan430074 China

Neuroblastoma is one of the most common cancers in infants, and the initial diagnosis of this disease is difficult. At present, the MYCN gene amplification (MNA) status is detected by invasive pathological examination of tumor samples. This is time-consuming and may have a hidden impact on children. To handle this problem, we adopt multiple machine learning (ML) algorithms to predict the presence or absence of MYCN gene amplification. The dataset is composed of retrospective CT images of 23 neuroblastoma patients. Different from previous work, we develop the algorithm without manually-segmented primary tumors which is time-consuming and not practical. Instead, we only need the coordinate of the center point and the number of tumor slices given by a subspecialty-trained pediatric radiologist. Specifically, CNN-based method uses pre-trained convolutional neural network, and radiomics-based method extracts radiomics features. Our results show that CNN-based method outperforms the radiomics-based method. Copyright © 2022, The Authors. All rights reserved.

关键词： Computerized tomography

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Observer-Based Robust Containment control of Multi-agent Systems With Input Saturation

Observer-Based Robust Containment Control of Multi-agent Sys...

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第三十九届中国控制会议

作者： Juan Qian Xiaoling Wang Guo-Ping Jiang Housheng Su College of Automation and College of Artificial Intelligence Nanjing University of Posts and Telecommunicationsand Jiangsu Engineering Lab for IOT Intelligent Robots(IOTRobot) School of Artificial Intelligence and Automation Image Processing and Intelligent Control Key Laboratory of Education Ministry of China Huazhong University of Science and Technology

In this paper, the robust containment control problem of the leader-following multi-agent systems with input saturation and input additive disturbance is addressed, where the followers can be informed by multiple leaders. With the help of the lowand-high gain feedback technique and the high-gain observer approach, a distributed control algorithm for each agent is firstly designed by using the observed output information, then sufficient conditions are provided to guarantee the semi-global robust containment of the system. Finally, some numerical simulations are given to verify the correctness of the theoretical results.

关键词： Containment control multi-agent system input saturation input additive disturbance

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Coordinated Navigation control of Cross-Domain Unmanned Systems via Guiding Vector Fields

arXiv

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arXiv 2023年

作者： Hu, Bin-Bin Zhang, Hai-Tao Liu, Bin Ding, Jianing Xu, Yifan Luo, Chuanshang Cao, Haosen The School of Artificial Intelligence and Automation The Engineering Research Center of Autonomous Intelligent Unmanned Systems The Key Laboratory of Image Processing and Intelligent Control The State Key Lab of Digital Manufacturing Equipment and Technology Huazhong University of Science and Technology Wuhan430074 China Dongguan University of Technology Dongguan523106 China

This paper proposes a distributed guiding-vector-field (DGVF) controller for cross-domain unmanned systems (CDUSs) consisting of heterogeneous unmanned aerial vehicles (UAVs) and unmanned surface vehicles (USVs), to achieve coordinated navigation whereas maneuvering along their prescribed paths. In particular, the DGVF controller provides a hierarchical architecture of an upper-level heterogeneous guidance velocity controller and a lower-level signal tracking regulator. Therein, the upper-level controller is to govern multiple heterogeneous USVs and UAVs to approach and maneuver along the prescribed paths and coordinate the formation simultaneously, whereas the low-level regulator is to track the corresponding desired guidance signals provided by the upper-level module. Significantly, the heterogeneous coordination among neighboring UAVs and USVs is achieved merely by the lightweight communication of a scalar (i.e., the additional virtual coordinate), which substantially decreases the communication and computational costs. Sufficient conditions assuring asymptotical convergence of the closed-loop system are derived in presence of the exponentially vanishing tracking errors. Finally, real-lake experiments are conducted on a self-established cross-domain heterogeneous platform consisting of three M-100 UAVs, two HUSTER-16 USVs, a HUSTER-12C USV, and a WiFi 5G wireless communication station to verify the effectiveness of the present DGVF controller. Copyright © 2023, The Authors. All rights reserved.

关键词： Air navigation

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Gait Planning and Motion control Based on Vrep Simulation for Quadruped Robot

Gait Planning and Motion Control Based on Vrep Simulation fo...

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WRC Symposium on Advanced Robotics and Automation (WRC SARA)

作者： Linqi Zhou Zhihua Chen Jun Liu Zhi Liu Yumeng Chen Liting Zhang key Laboratory of Jiangxi Province for Image Processing and Pattern Recognition and MOE Key Lab of Nondestructive Testing Technology Nanchang Hangkong University Nanchang China State Key Laboratory of Intelligent Control and Decision of Complex Systems School of Automation Beijing Institute of Technology Beijing China

Gait planning of quadruped robots plays an important role in achieving less walking, including dynamic and static gait. In this article, a static and dynamic gait control method based on center of gravity stability margin is proposed. Firstly, the robot model and kinematics modeling are introduced. Secondly, the robot’s foot static and dynamic gait were planned and the foot trajectory was designed. Finally, two types of gait of the robot were simulated using Vrep simulation software, and the differences in stability and speed between the coordinated gait with speed and stability in the static and dynamic gait of a 12 degree of freedom robot were analyzed, verifying the effectiveness of the gait control method proposed in this paper.

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Indirect effects among biodiversity loss of mutualistic ecosystems

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National Science Open 2022年第2期1卷 8-18页

作者： Guangwei Wang Xueming Liu Guanrong Chen Hai-Tao Zhang School of Artificial Intelligence and Automation Key Laboratory of Image Processing and Intelligent ControlHuazhong University of Science and TechnologyWuhan 430074China State Key Lab of Digital Manufacturing Equipment and Technology Huazhong University of Science and TechnologyWuhan 430074China Department of Electrical Engineering City University of Hong KongHong KongChina

Drastic reduction in biodiversity has been a severe threat to ecosystems,which is exacerbated when losing few species leads to disastrous and even irreparable ***,revealing the mechanism underlying biodiversity loss is of uttermost *** this study,we show that abundant indirect interactions among mutualistic ecosystems are critical in determining species’*** topological and ecological characteristics,we propose an indicator derived from a dynamic model to identify keystone species and quantify their influence,which outperforms widely-used indicators like degree in realistic and simulated ***,we demonstrate that networks with high modularity,heterogeneity,biodiversity,and less intimate interactions tend to have larger indirect effects,which are more amenable in predicting decline of biodiversity with the proposed *** findings shed some light onto the influence of apposite biodiversities,paving the way from complex network theory to ecosystem protection and restoration.

关键词： biodiversity indirect effect complex network mutualism

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