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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Guo, Kuo Li, Yifan Chen, Hao Shen, Hong-Bin Yang, Yang Shanghai Jiao Tong University Key Lab. of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Department of Computer Science and Engineering Shanghai200240 China Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Institute of Image Processing and Pattern Recognition Shanghai200240 China Carnegie Mellon University School of Computer Science Computational Biology Department PittsburghPA15213 United States

ISBN: (纸本)9798350337488

Isoforms refer to different mRNA molecules transcribed from the same gene, which can be translated into proteins with varying structures and functions. Predicting the functions of isoforms is an essential topic in bioinformatics as it can provide valuable insights into the intricate mechanisms of gene regulation and biological processes. Conventionally, gene function lab.ls are standardized in Gene Ontology (GO) terms. However, traditional methods for predicting isoform function are largely limited by the absence of isoform-specific lab.ls, sparse annotations, and the vast number of GO terms. To address these issues, we propose HANIso, a deep learning-based method for isoform function prediction. HANIso leverages a pretrained protein language model to extract features from protein sequences. It also integrates heterogeneous information, such as isoform sequence features, GO annotations, and isoform interaction data, using a Heterogeneous Graph Attention Network (HAN). This allows the model to learn the importance of different sources of information and their semantic relationships through the attention mechanism. Our method can predict function lab.ls at both the gene level and isoform level. We conduct experiments on two species datasets, and the results demonstrate that our method outperforms existing methods on both AUROC and AUPRC. HANIso has the potential to overcome the limitations of traditional methods and provide a more accurate and comprehensive understanding of isoform function. © 2023 IEEE.

关键词： alternative splicing gene ontology heterogeneous graph attention network isoform function prediction protein language model

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Research on key technologies of overlay multiple access based on deep learning

Research on key technologies of overlay multiple access base...

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2021 International Conference on Computer, Communication, control, Automation and Robotics, CCCAR 2021

作者： Huang, Ronglan Guangxi Colleges and Universities Key Lab. of Image Processing and Intelligent Information System Wuzhou University Guangxi Wuzhou543002 China

NOMA (Non-Orthogonal Multiple Access), as one of the candidate technologies of 5G, can improve the spectrum efficiency and system capacity, and has attracted wide attention. The essence of NOMA is multi-user overlay transmission in power domain, and multiple users will schedule on the same sub-band. The fundamental principle and key technologies of NOMA technology, such as power multiplexing superposition coding technology and SIC (Successful Interference Cancellation) technology, are described. The BER performance of NOMA communication system based on power domain in downlink is studied, and the appropriate power allocation ratio range is obtained. From the overall point of view of the system, users are grouped with the goal of maximizing the channel gain difference of all matched users, and then the problem of maximizing the weighted sum rate is transformed into the problem of minimizing the weighted sum mean square error by using the deep learning algorithm. By updating each optimization parameter iteratively in turn, it converges to the local optimum of the objective function. This method can improve the weighting and rate performance of the system with fewer iterations. © Published under licence by IOP Publishing Ltd.

关键词： Mean square error

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Two-Stage OD Flow Prediction for Emergency in Urban Rail Transit

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IEEE Transactions on intelligent Transportation Systems 2024年第1期25卷 920-928页

作者： Zhu, Guangyu Ding, Jiacun Wei, Yun Yi, Yang Xu, Sendren Sheng-Dong Wu, Edmond Q. Beijing Jiaotong University Key Lab. of Transport Industry of Big Data Application Technologies for Comprehensive Transport The Beijing Research Center of Urban Traffic Information Sensing and Service Technologies Beijing100044 China Beijing Mass Transit Railway Operation Corporation Ltd. Beijing100014 China Yangzhou University College of Information Engineering Yangzhou225127 China National Taiwan University of Science and Technology Automation and Control Center The Graduate Institute of Automation and Control Taipei106335 Taiwan Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China The Shanghai Engineering Research Center of Intelligent Control and Management Department of Automation Shanghai200240 China

Urban rail transit (URT) is vulnerable to natural disasters and social emergencies including fire, storm and epidemic (such as COVID-19), and real-time origin-destination (OD) flow prediction provides URT operators with important information to ensure the safety of URT system. However, hindered by the high dimensionality of OD flow and the lack of supportive information reflecting the real-time passenger flow changes, study in this area is at the beginning stage. A novel model consisting of two stages is proposed for OD flow prediction. The first stage predicts the inflows of all stations by Long Short-Term Memory (LSTM) in real time, where the dimension is reduced compared with predicting OD flows directly. In the second stage, the notion of separation rate, namely, the proportion of inbound passengers bounding for another station, is estimated. Finally, The OD flow is predicted by multiplying the inflow and separation rate. Experiments based on Hangzhou Metro dataset show the proposed model outperforms the contrast model in weighted mean average error (WMAE) and weighted mean square error (WMSE). Results also suggest that the proposed prediction model performs better on weekdays than on weekends, and with greater accuracy on larger OD flows. © 2000-2011 IEEE.

关键词： Forecasting

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Selective Bokeh Effect Transformation

Selective Bokeh Effect Transformation

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IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)

作者： Juewen Peng Zhiyu Pan Chengxin Liu Xianrui Luo Huiqiang Sun Liao Shen Ke Xian Zhiguo Cao Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Huazhong University of Science and Technology S-Lab Nanyang Technological University

Bokeh effect transformation is a novel task in computer vision and computational photography. It aims to convert bokeh effects from one camera lens to another. To this end, we introduce a new concept of blur ratio, which represents the ratio of the blur amount of a target image to that of a source image, and propose a novel framework SBTNet based on this concept. For cat-eye simulation and lens type transformation, a two-channel coordinate map and a two-channel one-hot map are added as extra inputs. The core of the framework is a sequence of parallel FeaNets, along with a feature selection and integration strategy, which aims to transform the blur amount with arbitrary blur ratio. The effectiveness of the proposed framework is demonstrated through extensive experiments, and our solution has achieved the top LPIPS metric in NTIRE 2023 Bokeh Effect Transformation Challenge.

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Deterministic-like data-driven discovery of stochastic differential equations via the Feynman–Kac formalism

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The European Physical Journal Special Topics 2024年 1-21页

作者： Ma, Chaoxiang Huang, Cheng Cheng, Cheng Li, Xiuting The College of Informatics Huazhong Agriculture University and the China–Poland Belt and Road Joint Laboratory on Measurement and Control Technology Huazhong University of Science and Technology Wuhan People’s Republic of China School of Artificial Intelligence and Automation Huazhong University of Science and Technology Ministry of Education Key Lab of Intelligent Control and Image Processing Wuhan China

This paper develops a data-driven deterministic identification architecture for discovering stochastic differential equations (SDEs) directly from data. The architecture first generates deterministic data for stochastic processes using the Feynman–Kac formula, and gives a parabolic partial differential equation (PDE) associated with the SDE. Then, a sparse regression model is proposed to discover drift and diffusion terms in SDEs using PDE data-driven techniques, where a large candidate library of potential terms only for the drift and diffusion coefficients in SDEs need be constructed. To simultaneously infer the drift and diffusion terms, we proposed a sequential thresholded reweighted least-squares algorithm to solve the constructed sparse regression model. The main advantage of the proposed method is that on the one hand, theoretical and numerical identification results of PDEs can be used for SDEs, on the score, our SDE identification problem is translated into the parameter estimation problem of PDEs, on the other hand, the proposed algorithm is easily executed and can enhance the sparsity and accuracy. Through several classical SDEs and ordinary differential equations, the effectiveness of the proposed data-driven method is demonstrated, and several comparison experiments with state-of-the-art approaches is provided to illustrate the superiority of the developed algorithm.

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IRSEnet: Differentially Private image Generation with Multi-Scale Feature Extraction and Residual Channel Attention

IRSEnet: Differentially Private Image Generation with Multi-...

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International Conference on intelligent control and Information processing (ICICIP)

作者： Jiahao Li Zhongshuai Wang Kamarul Hawari Bin Ghazali Suqing Yan Rushi Lan Xiyan Sun Xiaonan Luo Guangxi Key Lab. of Image and Graphic Intelligent Processing Guilin University of Electronic Technology Guilin China Centre for Advanced Industrial Technology University of Malaysia Pahang Al-Sultan Abdullah Pekan Pahang Malaysia Int. Joint Research Lab. of Spatio-temporal Information and Intelligent Location Services Guilin University of Electronic Technology Guilin China

ISBN: (数字)9798331516147

ISBN: (纸本)9798331516154

Privacy-preserving image generation is particularly crucial in fields like healthcare, where data are both sensitive and limited. However, effective privacy preservation often compromises the visual quality and utility of the generated images due to privacy budget constraints. To address this issue, in this paper, We propose a novel network architecture, IRSEnet, which combines multi-scale feature extraction technology and residual channel attention mechanisms, aiming to enhance the visual quality of generated images and improve the performance of downstream classification tasks under differential privacy. The differential privacy mechanism ensures the security of sensitive data during training, while the multi-scale feature extraction module enhances feature extraction capabilities through parallel convolutional layers at multiple scales. Additionally, the channel attention module dynamically adjusts channel weights to focus on the most discriminative features. Experimental results demonstrate that this model significantly improves the utility of generated images and the accuracy of downstream classification tasks while preserving privacy. Future work will explore the application of this approach on larger datasets and across more diverse tasks.

关键词： Training Differential privacy Privacy Visualization Accuracy image synthesis Computational modeling Feature extraction Security Synthetic data

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3D Cinemagraphy from a Single image

3D Cinemagraphy from a Single Image

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Conference on Computer Vision and Pattern Recognition (CVPR)

作者： Xingyi Li Zhiguo Cao Huiqiang Sun Jianming Zhang Ke Xian Guosheng Lin Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Huazhong University of Science and Technology S-Lab Nanyang Technological University Adobe Research

We present 3D Cinemagraphy, a new technique that mar-ries 2D image animation with 3D photography. Given a single still image as input, our goal is to generate a video that contains both visual content animation and camera motion. We empirically find that naively combining existing 2D image animation and 3D photography methods leads to obvious artifacts or inconsistent animation. Our key insight is that representing and animating the scene in 3D space offers a natural solution to this task. To this end, we first convert the input image into feature-based layered depth images using predicted depth values, followed by unprojecting them to a feature point cloud. To animate the scene, we perform motion estimation and lift the 2D motion into the 3D scene flow. Finally, to resolve the problem of hole emer-gence as points move forward, we propose to bidirectionally displace the point cloud as per the scene flow and synthe-size novel views by separately projecting them into target image planes and blending the results. Extensive experiments demonstrate the effectiveness of our method. A user study is also conducted to validate the compelling rendering results of our method.

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Global Convergence Guarantees of (A)GIST for a Family of Nonconvex Sparse Learning Problems

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IEEE Transactions on Cybernetics 2022年第5期52卷 3276-3288页

作者： Zhang, Hengmin Qian, Feng Shang, Fanhua Du, Wenli Qian, Jianjun Yang, Jian East China University of Science and Technology Key Laboratory of Advanced Control and Optimization for Chemical Processes of Ministry of Education School of Information Science and Engineering Shanghai200237 China Shanghai Institute of Intelligent Science and Technology Tongji University Shanghai200092 China Xidian University Key Laboratory of Intelligent Perception and Image Understanding of Ministry of Education School of Artificial Intelligence Xi'an710071 China Peng Cheng Laboratory Shenzhen518066 China Nanjing University of Science and Technology Pca Laboratory Key Lab. of Intelligent Percept. and Syst. for High-Dimensional Information of Ministry of Education Nanjing210094 China Nanjing University of Science and Technology Jiangsu Key Laboratory of Image and Video Understanding for Social Security School of Computer Science and Engineering Nanjing210094 China

In recent years, most of the studies have shown that the generalized iterated shrinkage thresholdings (GISTs) have become the commonly used first-order optimization algorithms in sparse learning problems. The nonconvex relaxations of the \ell _{0} -norm usually achieve better performance than the convex case (e.g., \ell _{1} -norm) since the former can achieve a nearly unbiased solver. To increase the calculation efficiency, this work further provides an accelerated GIST version, that is, AGIST, through the extrapolation-based acceleration technique, which can contribute to reduce the number of iterations when solving a family of nonconvex sparse learning problems. Besides, we present the algorithmic analysis, including both local and global convergence guarantees, as well as other intermediate results for the GIST and AGIST, denoted as (A)GIST, by virtue of the Kurdyka-Lojasiewica (KL) property and some milder assumptions. Numerical experiments on both synthetic data and real-world databases can demonstrate that the convergence results of objective function accord to the theoretical properties and nonconvex sparse learning methods can achieve superior performance over some convex ones. © 2013 IEEE.

关键词： Optimization

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Lightweight Human Pose Estimation Using Heatmap-Weighting Loss

arXiv

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arXiv 2022年

作者： Li, Shiqi Xiang, Xiang MoE Key Lab of Image Information Processing Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology China

Recent research on human pose estimation exploits complex structures to improve performance on benchmark datasets, ignoring the resource overhead and inference speed when the model is actually deployed. In this paper, we lighten the computation cost and parameters of the deconvolution head network in SimpleBaseline and introduce an attention mechanism that utilizes original, inter-level, and intra-level information to intensify the accuracy. Additionally, we propose a novel loss function called heatmap weighting loss, which generates weights for each pixel on the heatmap that makes the model more focused on keypoints. Experiments demonstrate our method achieves a balance between performance, resource volume, and inference speed. Specifically, our method can achieve 65.3 AP score on COCO test-dev, while the inference speed is 55 FPS and 18 FPS on the mobile GPU and CPU, respectively. Copyright © 2022, The Authors. All rights reserved.

关键词： Benchmarking

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3D Cinemagraphy from a Single image

arXiv

引用

arXiv 2023年

作者： Li, Xingyi Cao, Zhiguo Sun, Huiqiang Zhang, Jianming Xian, Ke Lin, Guosheng Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Huazhong University of Science and Technology China Adobe Research S-Lab Nanyang Technological University Singapore

We present 3D Cinemagraphy, a new technique that marries 2D image animation with 3D photography. Given a single still image as input, our goal is to generate a video that contains both visual content animation and camera motion. We empirically find that naively combining existing 2D image animation and 3D photography methods leads to obvious artifacts or inconsistent animation. Our key insight is that representing and animating the scene in 3D space offers a natural solution to this task. To this end, we first convert the input image into feature-based layered depth images using predicted depth values, followed by unprojecting them to a feature point cloud. To animate the scene, we perform motion estimation and lift the 2D motion into the 3D scene flow. Finally, to resolve the problem of hole emergence as points move forward, we propose to bidirectionally displace the point cloud as per the scene flow and synthesize novel views by separately projecting them into target image planes and blending the results. Extensive experiments demonstrate the effectiveness of our method. A user study is also conducted to validate the compelling rendering results of our method. Copyright © 2023, The Authors. All rights reserved.

关键词： Animation

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