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作者： Wang, Linbo Tan, Li Fang, Xianyong Guo, Yanwen Wan, Shaohua MOE Key Laboratory of Intelligent Computing and Signal Processing School of Computer Science and Technology Anhui University Hefei China National Key Lab for Novel Software Technology Nanjing University Nanjing China School of Information and Safety Engineering Zhongnan University of Economics and Law Wuhan China

The transformational and spatial proximities are important cues for identifying inliers from an appearance based match set because correct matches generally stay close in input images and share similar local transformations. However, most existing approaches only check one type of them or both types consecutively with manually set thresholds, and thus their matching accuracy and flexibility in handling large-scale images are limited. In this paper, we present an efficient clustering based approach to identify match inliers with both proximities simultaneously. It first projects the putative matches into a joint transformational-spatial space, where mismatches tend to scatter all around while correct matches gather together. A mode-seeking process based on joint kernel density estimation is then proposed to obtain significant clusters in the joint space, where each cluster contains matches mapping the same object across images with high accuracy. Moreover, kernel bandwidths for measuring match proximities are adaptively set during density estimation, which enhances its applicability for matching different images. Experiments on three standard datasets show that the proposed approach delivers superior performance on a variety of feature matching tasks, including multi-object matching, duplicate object matching and object retrieval. © 2021, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

关键词： Clustering Density estimation Feature matching Mode-seeking

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Protein Structure Prediction:Challenges,Advances,and the Shift of Research Paradigms

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Genomics, Proteomics & Bioinformatics 2023年第5期21卷 913-925页

作者： Bin Huang Lupeng Kong Chao Wang Fusong Ju Qi Zhang Jianwei Zhu Tiansu Gong Haicang Zhang Chungong Yu Wei-Mou Zheng Dongbo Bu Key Laboratory of Intelligent Information Processing Institute of Computing TechnologyChinese Academy of SciencesBeijing 100190China University of Chinese Academy of Sciences Beijing 100049China Changping Laboratory Beijing 102206China Microsoft Research AI4Science Beijing 100080China Huawei Noah’s Ark Lab Wuhan 430206China Zhongke Big Data Academy Zhengzhou 450046China Institute of Theoretical Physics Chinese Academy of SciencesBeijing 100190China

Protein structure prediction is an interdisciplinary research topic that has attracted researchers from multiple fields,including biochemistry,medicine,physics,mathematics,and computer *** researchers adopt various research paradigms to attack the same structure prediction problem:biochemists and physicists attempt to reveal the principles governing protein folding;mathematicians,especially statisticians,usually start from assuming a probability distribution of protein structures given a target sequence and then find the most likely structure,while computer scientists formulate protein structure prediction as an optimization problem-finding the structural conformation with the lowest energy or minimizing the difference between predicted structure and native *** research paradigms fall into the two statistical modeling cultures proposed by Leo Breiman,namely,data modeling and algorithmic ***,we have also witnessed the great success of deep learning in protein structure *** this review,we present a survey of the efforts for protein structure *** compare the research paradigms adopted by researchers from different fields,with an emphasis on the shift of research paradigms in the era of deep *** short,the algorithmic modeling techniques,especially deep neural networks,have considerably improved the accuracy of protein structure prediction;however,theories interpreting the neural networks and knowledge on protein folding are still highly desired.

关键词： Protein folding Protein structure prediction Deep learning Transformer Language model

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Food computing for Nutrition and Health

Food Computing for Nutrition and Health

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International Conference on Data Engineering Workshops

作者： Shuqiang Jiang Institute of Computing Technology Chinese Academy of Sciences Key Laboratory of Intelligent Information Processing Beijing University of Chinese Academy of Sciences Beijing

ISBN: (数字)9798350384031

ISBN: (纸本)9798350384048

Dietary intake is the main source of human nutrition and thus an important material foundation for maintaining human health. Food computing applies computational approaches to intelligently obtain dietary categories, ingredients, and nutrient intake from dietary data, and then provides dietary recommendations to users based on various dietary factors. Therefore, it can achieve intelligent dietary management to assist in solving human health issues. For its significant impact on human health, it has received more attention from both academia and industry, and has made rapid development, especially with the booming Artificial Intelligence (AI). This talk will first introduce the definition, methods, tasks and applications of food computing. Then we will discuss its various tasks, ranging from vision-based multi-granularity food analysis, multimodal recipe analysis, food knowledge graph construction and dietary recommendation. Finally, we will point out future research directions on food computing, such as large food language/multimodal models and the emerging interdisciplinary field AI4Food from the synergy between AI and food science. We expect that this talk will provide the researchers with a more comprehensive understanding of the field, and provide perspectives for the next wave of development in this rapidly growing field.

关键词： Industries Conferences Computational modeling Knowledge graphs Data engineering Distance measurement Artificial intelligence

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FoodSky: A food-oriented large language model that can pass the chef and dietetic examinations

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Patterns 2025年第5期6卷

作者： Zhou, Pengfei Min, Weiqing Fu, Chaoran Jin, Ying Huang, Mingyu Li, Xiangyang Mei, Shuhuan Jiang, Shuqiang Key Laboratory of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China Institute of Intelligent Computing Technology Chinese Academy of Sciences Suzhou China Zhongke Shenjian Technology Co. Ltd. Suzhou China

Food is the cornerstone of both survival and social life. With the increasing complexity of global dietary cultures, there is a growing demand for food intelligence to enable tasks like recipe recommendations and diet-disease correlation discovery. To address this, we introduce the food-oriented large language model (LLM) FoodSky, which offers fine-grained perception and reasoning on food data. We constructed a food corpus, FoodEarth, from various authoritative sources to enhance FoodSky's knowledge. We also developed the topic-based selective state space model and hierarchical topic retrieval augmented generation algorithms to improve FoodSky's ability to capture fine-grained food semantics and generate context-aware food-relevant text. Extensive experiments show that FoodSky significantly outperforms general-purpose LLMs on the Chinese National Chef Examination and Dietetic Examination, achieving an accuracy of 83.3% and 91.2%, respectively. Beyond enhancing culinary creativity and promoting healthier eating patterns, FoodSky aims to establish a new benchmark for domain-specific LLMs in addressing real-world food-related challenges. © 2025 The Author(s)

关键词： Food ingredients

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AlphaFold2 and its applications in the fields of biology and medicine

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Signal Transduction and Targeted Therapy 2023年第4期8卷 1630-1643页

作者： Zhenyu Yang Xiaoxi Zeng Yi Zhao Runsheng Chen West China Biomedical Big Data Center West China HospitalSichuan UniversityChengdu 610041China Key Laboratory of Intelligent Information Processing Advanced Computer Research CenterInstitute of Computing TechnologyChinese Academy of SciencesBeijing 100190China Key Laboratory of RNA Biology Center for Big Data Research in HealthInstitute of BiophysicsChinese Academy of SciencesBeijing 100101China Pingshan Translational Medicine Center Shenzhen Bay LaboratoryShenzhen 518118China

AlphaFold2(AF2)is an artificial intelligence(AI)system developed by DeepMind that can predict three-dimensional(3D)structures of proteins from amino acid sequences with atomic-level *** structure prediction is one of the most challenging problems in computational biology and chemistry,and has puzzled scientists for 50 *** advent of AF2 presents an unprecedented progress in protein structure prediction and has attracted much *** release of structures of more than 200 million proteins predicted by AF2 further aroused great enthusiasm in the science community,especially in the fields of biology and ***2 is thought to have a significant impact on structural biology and research areas that need protein structure information,such as drug discovery,protein design,prediction of protein function,et *** the time is not long since AF2 was developed,there are already quite a few application studies of AF2 in the fields of biology and medicine,with many of them having preliminarily proved the potential of *** better understand AF2 and promote its applications,we will in this article summarize the principle and system architecture of AF2 as well as the recipe of its success,and particularly focus on reviewing its applications in the fields of biology and *** of current AF2 prediction will also be discussed.

关键词： system fields Fold

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Harnessing Hierarchical lab.l Distribution Variations in Test Agnostic Long-tail Recognition 41

Harnessing Hierarchical Label Distribution Variations in Tes...

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41st International Conference on Machine Learning, ICML 2024

作者： Yang, Zhiyong Xu, Qianqian Wang, Zitai Li, Sicong Han, Boyu Bao, Shilong Cao, Xiaochun Huang, Qingming School of Computer Science and Tech. University of Chinese Academy of Sciences China Key Lab. of Intelligent Information Processing Institute of Computing Tech. CAS China Institute of Information Engineering CAS China School of Cyber Security University of Chinese Academy of Sciences China School of Cyber Science and Tech. Shenzhen Campus of Sun Yat-sen University China BDKM University of Chinese Academy of Sciences China

This paper explores test-agnostic long-tail recognition, a challenging long-tail task where the test lab.l distributions are unknown and arbitrarily imbalanced. We argue that the variation in these distributions can be broken down hierarchically into global and local levels. The global ones reflect a broad range of diversity, while the local ones typically arise from milder changes, often focused on a particular neighbor. Traditional methods predominantly use a Mixture-of-Expert (MoE) approach, targeting a few fixed test lab.l distributions that exhibit substantial global variations. However, the local variations are left unconsidered. To address this issue, we propose a new MoE strategy, DirMixE, which assigns experts to different Dirichlet meta-distributions of the lab.l distribution, each targeting a specific aspect of local variations. Additionally, the diversity among these Dirichlet meta-distributions inherently captures global variations. This dual-level approach also leads to a more stable objective function, allowing us to sample different test distributions better to quantify the mean and variance of performance outcomes. Theoretically, we show that our proposed objective benefits from enhanced generalization by virtue of the variance-based regularization. Comprehensive experiments across multiple benchmarks confirm the effectiveness of DirMixE. The code is availab.e at https://***/scongl/DirMixE. Copyright 2024 by the author(s)

关键词： Benchmarking

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Weighted ROC curve in cost space: extending AUC to cost-sensitive learning 23

Weighted ROC curve in cost space: extending AUC to cost-sens...

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Proceedings of the 37th International Conference on Neural information processing Systems

作者： Huiyang Shao Qianqian Xu Zhiyong Yang Peisong Wen Peifeng Gao Qingming Huang Key Lab. of Intelligent Information Processing Institute of Computing Tech. CAS and School of Computer Science and Tech. University of Chinese Academy of Sciences Key Lab. of Intelligent Information Processing Institute of Computing Tech. CAS School of Computer Science and Tech. University of Chinese Academy of Sciences School of Computer Science and Tech. University of Chinese Academy of Sciences and Key Lab. of Intelligent Information Processing Institute of Computing Tech. CAS and BDKM University of Chinese Academy of Sciences

In this paper, we aim to tackle flexible cost requirements for long-tail datasets, where we need to construct a (1) cost-sensitive and (2) class-distribution robust learning framework. The misclassification cost and the area under the ROC curve (AUC) are popular metrics for (1) and (2), respectively. However, limited by their formulations, models trained with AUC are not well-suited for cost-sensitive decision problems, and models trained with fixed costs are sensitive to the class distribution shift. To address this issue, we present a new setting where costs are treated like a dataset to deal with arbitrarily unknown cost distributions. Moreover, we propose a novel weighted version of AUC where the cost distribution can be integrated into its calculation through decision thresholds. To formulate this setting, we propose a novel bilevel paradigm to bridge weighted AUC (WAUC) and cost. The inner-level problem approximates the optimal threshold from sampling costs, and the outer-level problem minimizes the WAUC loss over the optimal threshold distribution. To optimize this bilevel paradigm, we employ a stochastic optimization algorithm (SACCL) which enjoys the same convergence rate (O(ε-4)) with the SGD. Finally, experiment results show that our algorithm performs better than existing cost-sensitive learning methods and two-stage AUC decisions approach.

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Extracting Variable-Depth Logical Document Hierarchy from Long Documents:Method,Evaluation,and Application

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Journal of Computer Science & technology 2022年第3期37卷 699-718页

作者： Rong-Yu Cao Yi-Xuan Cao Gan-Bin Zhou Ping Luo Key Laboratory of Intelligent Information Processing of Chinese Academy of Sciences Institute of Computing TechnologyChinese Academy of SciencesBeijing 100190China University of Chinese Academy of Sciences Beijing 100049China WeChat Search Application Department Tencent Holdings Ltd.Beijing 100080China Peng Cheng Laboratory Shenzhen 518066China

In this paper,we study the problem of extracting variable-depth"logical document hierarchy"from long documents,namely organizing the recognized"physical document objects"into hierarchical *** discovery of logical document hierarchy is the vital step to support many downstream applications(e.g.,passage-based retrieval and high-quality information extraction).However,long documents,containing hundreds or even thousands of pages and a variable-depth hierarchy,challenge the existing *** address these challenges,we develop a framework,namely Hierarchy Extraction from Long Document(HELD),where we"sequentially"insert each physical object at the proper position on the current *** whether each possible position is proper or not can be formulated as a binary classification *** further improve its effectiveness and efficiency,we study the design variants in HELD,including traversal orders of the insertion positions,heading extraction explicitly or implicitly,tolerance to insertion errors in predecessor steps,and so *** for evaluations,we find that previous studies ignore the error that the depth of a node is correct while its path to the root is *** such mistakes may worsen the downstream applications seriously,a new measure is developed for a more careful *** empirical experiments based on thousands of long documents from Chinese financial market,English financial market and English scientific publication show that the HELD model with the"root-to-leaf"traversal order and explicit heading extraction is the best choice to achieve the tradeoff between effectiveness and efficiency with the accuracy of 0.972,6,0.729,1 and 0.957,8 in the Chinese financial,English financial and arXiv datasets,***,we show that the logical document hierarchy can be employed to significantly improve the performance of the downstream passage retrieval *** summary,we conduct a systematic study on this task in terms of methods

关键词： logical document hierarchy long documents passage retrieval

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DragEntity:Trajectory Guided Video Generation using Entity and Positional Relationships

arXiv

引用

arXiv 2024年

作者： Wan, Zhang Tang, Sheng Wei, Jiawei Zhang, Ruize Cao, Juan Institute of Computing Technology Chinese Academy of Sciences University of Chinese Academy of Sciences Beijing China Zhengzhou University Zhengzhou China Key Lab of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences China

In recent years, diffusion models have achieved tremendous success in the field of video generation, with controllab.e video generation receiving significant attention. However, existing control methods still face two limitations: Firstly, control conditions (such as depth maps, 3D Mesh) are difficult for ordinary users to obtain directly. Secondly, it’s challenging to drive multiple objects through complex motions with multiple trajectories simultaneously. In this paper, we introduce DragEntity, a video generation model that utilizes entity representation for controlling the motion of multiple objects. Compared to previous methods, DragEntity offers two main advantages: 1) Our method is more user-friendly for interaction because it allows users to drag entities within the image rather than individual pixels. 2) We use entity representation to represent any object in the image, and multiple objects can maintain relative spatial relationships. Therefore, we allow multiple trajectories to control multiple objects in the image with different levels of complexity simultaneously. Our experiments validate the effectiveness of DragEntity, demonstrating its excellent performance in fine-grained control in video generation. Copyright © 2024, The Authors. All rights reserved.

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End States Guided Matching Network for Retrieval-based Multi-turn Conversation 3

End States Guided Matching Network for Retrieval-based Multi...

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2021年第三届先进计算机技术、信息科学与通信国际会议(CTISC2021)

作者： Weixin Tan Dandan Song Yujin Gao Lab of High Volume language Information Processing & Cloud Computing Beijing Lab of Intelligent Information TechnologyBeijing Institute of Technology

ISBN: (纸本)9781665418683

Multi-turn conversation response selection aims to choose the best response from multiple candidates based on matching it with the dialogue context. Mostly, a response full of context-related information tends to be a proper ***, in some cases, a brief response like "ok" could be the more appropriate one. We find that it is a semantically ended conversation that a brief response usually comes after,so there is no need to provide any context-related information after that. Thus, in addition to match the response with context,it is also critical to recognize the state of whether a dialogue has ended, and learn how to get necessary information from context of different end states separately. To achieve this, we propose an end states guided matching network to determine and incorporate the end states by jointly consider the length of response and the local similarity between the response and last few utterances. In addition, we adopt multiple descriptive sequence representations for a more reliable matching *** results demonstrate that our model outperforms the state-of-the-art methods in multiple datasets.

关键词： information science Computational modeling Computer network reliability Reliability Data mining

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