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Feature Selection for Data Classification based on Binary Brain Storm Optimization

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Feature Selection for Data Classification based on Binary Br...

IEEE International Conference on Cloud computing and Intelligence Systems (CCIS)

作者： Farhad Pourpanah Ran Wang Xizhao Wang College of Mathematics and Statistics Shenzhen University China Shenzhen Key Lab. Of advanced machine learning and applications Shenzhen University China Guangdong Key Lab. of Intelligent Information Processing Shenzhen University China

ISBN: (数字)9781728138633

ISBN: (纸本)9781728138640

Brain Storm Optimization (BSO) is an effective population-based optimization method inspired by human brainstorming process. This paper proposes a new binary BSO algorithm (BBSO) to develop a new feature selection approach in order to reduce the number of selected features and/or improve the classification accuracy. Specifically, a new update rule mechanism for generating new solutions is proposed, which improves the convergence speed and reduces the possibility of immature convergence in the algorithm. Furthermore, a fuzzy ARTMAP (FAM) neural network, which is an incremental learning model, is utilized as a classification approach to evaluate the effectiveness of the selected feature subsets. The performance of the proposed method is compared with those from the original BSO, particle swarm optimization (PSO) and genetic algorithm (GA) on eight commonly used and well-known benchmark problems. The experimental results indicate the superiority of the BBSO as compared with other state-of-the-art feature selection methods.

关键词： Knowledge based systems

Syntax-enhanced Pre-trained model

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arXiv 2020年

作者： Xu, Zenan Guo, Daya Tang, Duyu Su, Qinliang Shou, Linjun Gong, Ming Zhong, Wanjun Quan, Xiaojun Jiang, Daxin Duan, Nan School of Computer Science and Engineering Sun Yat-sen University Guangzhou China Microsoft Research Asia Beijing China Microsoft Search Technology Center Asia Beijing China Guangdong Key Laboratory Big Data Analysis and Processing Guangzhou China Key Lab. of Machine Intelligence and Advanced Computing Ministry of Education China

We study the problem of leveraging the syntactic structure of text to enhance pre-trained models such as BERT and RoBERTa. Existing methods utilize syntax of text either in the pre-training stage or in the fine-tuning stage, so that they suffer from discrepancy between the two stages. Such a problem would lead to the necessity of having human-annotated syntactic information, which limits the application of existing methods to broader scenarios. To address this, we present a model that utilizes the syntax of text in both pre-training and fine-tuning stages. Our model is based on Transformer with a syntax-aware attention layer that considers the dependency tree of the text. We further introduce a new pre-training task of predicting the syntactic distance among tokens in the dependency tree. We evaluate the model on three downstream tasks, including relation classification, entity typing, and question answering. Results show that our model achieves state-of-the-art performance on six public benchmark datasets. We have two major findings. First, we demonstrate that infusing automatically produced syntax of text improves pre-trained models. Second, global syntactic distances among tokens bring larger performance gains compared to local head relations between contiguous tokens. Copyright © 2020, The Authors. All rights reserved.

关键词： Syntactics

A Review of Generalized Zero-Shot Learning Methods

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arXiv 2020年

作者： Pourpanah, Farhad Abdar, Moloud Luo, Yuxuan Zhou, Xinlei Wang, Ran Lim, Chee Peng Wang, Xi-Zhao Jonathan Wu, Q.M. The Centre for Computer Vision and Deep Learning Department of Electrical and Computer Engineering University of Windsor WindsorONN9B 3P4 Canada Deakin University Australia The Department of Computer Science City University of Hong Kong Hong Kong The College of Mathematics and Statistics Shenzhen Key Lab. of Advanced Machine Learning and Applications Shenzhen University Shenzhen518060 China The College of Computer Science and Software Engineering Guangdong Key Lab. of Intelligent Information Processing Shenzhen University Shenzhen518060 China

Generalized zero-shot learning (GZSL) aims to train a model for classifying data samples under the condition that some output classes are unknown during supervised learning. To address this challenging task, GZSL leverages semantic information of the seen (source) and unseen (target) classes to bridge the gap between both seen and unseen classes. Since its introduction, many GZSL models have been formulated. In this review paper, we present a comprehensive review on GZSL. Firstly, we provide an overview of GZSL including the problems and challenges. Then, we introduce a hierarchical categorization for the GZSL methods and discuss the representative methods in each category. In addition, we discuss the availab.e benchmark data sets and applications of GZSL, along with a discussion on the research gaps and directions for future investigations. Copyright © 2020, The Authors. All rights reserved.

关键词： Zero-shot learning

Drug3D-DTI: Improved Drug-target Interaction Prediction by Incorporating Spatial information of Small Molecules

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Drug3D-DTI: Improved Drug-target Interaction Prediction by I...

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Zhirui Liao Xiaodi Huang Hiroshi Mamitsuka Shanfeng Zhu School of Computer Science Fudan University Shanghai China Institute of Artificial Intelligence Biomedicine Nanjing University Nanjing China School of Computing Mathematics and Engineering Charles Sturt University Albury NSW Australia Bioinformatics Center Institute for Chemical Research Kyoto University Uji Kyoto Japan Institute of Science and Technology for Brain-Inspired Intelligence Fudan University Shanghai China Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University) Ministry of Education China MOE Frontiers Center for Brain Science Fudan University Shanghai China Zhangjiang Fudan International Innovation Center Shanghai China Shanghai Key Lab of Intelligent Information Processing Fudan University Shanghai China

ISBN: (纸本)9781665429825

A number of machine learning (ML) approaches for drug discovery have been availab.e that rely only on sequential (1D) and planar (2D) information without effectively using the 3D information for generating features of drugs. However, 3D information of small molecules can reflect relative position of atoms more directly, which affects molecular properties. In this work, we present a new deep learning model called Drug3D-DTI for drug-target interaction prediction. Drug3D-DTI takes advantage of molecular spatial information, i.e., atom proximity in three-dimensional (3D) structures. We comprehensively evaluated the performance of Drug3D-DTI on two datasets with two tasks of regression and classification. In particular, we compared Drug3D-DTI with several existing methods including the two cutting-edge methods for compound-protein interaction prediction. From the experimental results, Drug3D-DTI clearly outperformed other methods under all settings. Further, this performance improvement was validated by ablation experiments and a case study. The implementation of Drug3D-DTI is availab.e at (https://***/zhiruiliao/Drug3D-DTI).

关键词： Drugs Proteins Deep learning Solid modeling Three-dimensional displays Conferences Predictive models

An acupoint-originated human interstitial fluid circulatory network

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Chinese Medical Journal 2021年第19期134卷 2365-2369页

作者： Hong-Yi Li Fang Wang Min Chen Zhi-Jian Zheng Ya-Jun Yin Jun Hu Hua Li Andreas Sammer Georg Feigl Norbert Maurer Chao Ma Fu-Sui Ji Department of Cardiology Beijing HospitalNational Center of GerontologyInstitute of Geriatric MedicineChinese Academy of Medical SciencesBeijing 100730China Department of Radiology Beijing HospitalNational Center of GerontologyInstitute of Geriatric MedicineChinese Academy of Medical SciencesBeijing 100730China Department of Accupuncture Beijing HospitalNational Center of GerontologyInstitute of Geriatric MedicineChinese Academy of Medical SciencesBeijing 100730China Department of Engineering Mechanics Tsinghua UniversityBeijing 10084China Key Lab of Interfacial Physics and Technology Shanghai Institute of Applied PhysicsChinese Academy of SciencesShanghai 201210China Shanghai Synchrotron Radiation Facility Shanghai Advanced Research InstituteChinese Academy of SciencesShanghai 201210China Key Lab of Intelligent Information Processing Institute of Computing Technology and University of Chinese Academy of SciencesBeijing 100190China Ordination Dr.Sammer Dr.med.univ.Andreas SammerGrazAustria Institute of Anatomy and Clinical Morphology University of Witten/HerdeckeWittenGermany University Clinic for Physical Medicine Rehabilitation and Occupational MedicineMedical University of ViennaViennaAustria Institute of Basic Medical Sciences Chinese Academy of Medical SciencesDepartment of Human AnatomyHistology and EmbryologySchool of Basic MedicinePeking Union Medical CollegeBeijing 100005China Chinese Institute for Brain Research Beijing 100005China

To the Editor:Since 1027,when the Tian Sheng Bronze Statue showing acupoints and meridians was first introduced for medical practitioners,it has evolved to the currently used acupoints and meridians atlas in traditional Chinese medicine(TCM).[1]To date,the acupoints represent defined areas on the body surface relative to certain *** acupoints in the extremity endings would connect anatomically with diverse associated visceral organs or tissues,forming a Meridian and Collateral *** on the atlas,each main meridian is usually a virtual line connecting a group of adjacent acupoints that correlate with certain visceral *** modern medical science,the anatomical structures of main meridians remain largely unclarified.

关键词： organs originated connecting

An insight into acupoints and meridians in human body based on interstitial fluid circulation

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arXiv 2020年

作者： Li, Hongyi Yin, Yajun Hu, Jun Li, Hua Wang, Fang Ji, Fusui Ma, Chao Cardiology Department Beijing Hospital National Center of Gerontology Beijing China Department of Engineering Mechanics Tsinghua University Beijing China Key Lab of Interfacial Physics and Technology Shanghai Institute of Applied Physics Chinese Academy of Sciences Shanghai China Shanghai Synchrotron Radiation Facility Shanghai Advanced Research Institute Chinese Academy of Sciences Shanghai China Key Lab of Intelligent Information Processing Institute of Computing Technology University of Chinese Academy of Sciences Beijing China Institute of Basic Medical Sciences Chinese Academy of Medical Sciences Department of Human Anatomy Histology and Embryology School of Basic Medicine Peking Union Medical College Beijing China Chinese Institute for Brain Research Beijing China

The atlas of human acupoints and meridians has been utilized in clinical practice for almost a millennium although the anatomical structures and functions remain to be clarified. It has recently been reported that a long-distance interstitial fluid (ISF) circulatory pathway may originate from the acupoints in the extremities. As observed in living human subjects, cadavers and animals using magnetic resonance imaging and fluorescent tracers, the ISF flow pathways include at least 4 types of anatomical structures: the cutaneous-, perivenous-, periarterial-, and neural-pathways. Unlike the blood or lymphatic vessels, these ISF flow pathways are composed of highly ordered and topologically connected interstitial fibrous connective tissues that may work as guiderails for the ISF to flow actively over long distance under certain driving forces. Our experimental results demonstrated that most acupoints in the extremity endings connect with one or more ISF flow pathways and comprise a complex network of acupoint-ISF-pathways. We also found that this acupoint-ISF-pathway network can connect to visceral organs or tissues such as the pericardium and epicardium, even though the topographical geometry in human extremities does not totally match the meridian lines on the atlas that is currently used in traditional Chinese medicine. Based on our experimental data, the following working hypotheses are proposed: 1, there are one or more ISF flow pathways, including at least one cutaneous pathway, originated from an acupoint on the body surface. 2, the acupoints on the body surface specifically connect with certain visceral organs or tissues via ISF flow. And 3, the acupoint-originated ISF pathways constitute a complex connective network and can modulate the ISF and bio-signals in the microenvironments around cells in certain visceral organs or tissues from body surfaces. A comprehensive atlas will be constructed to systemically reveal the detailed anatomical structures of the acupoi

关键词： Histology

Technology Roadmap for Flexible Sensors

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ACS NANO 2023年第6期17卷 5211-5295页

作者： Luo, Yifei Abidian, Mohammad Reza Ahn, Jong-Hyun Akinwande, Deji Andrews, Anne M. Antonietti, Markus Bao, Zhenan Berggren, Magnus Berkey, Christopher A. Bettinger, Christopher John Chen, Jun Chen, Peng Cheng, Wenlong Cheng, Xu Choi, Seon-Jin Chortos, Alex Dagdeviren, Canan Dauskardt, Reinhold H. Di, Chong-an Dickey, Michael D. Duan, Xiangfeng Facchetti, Antonio Fan, Zhiyong Fang, Yin Feng, Jianyou Feng, Xue Gao, Huajian Gao, Wei Gong, Xiwen Guo, Chuan Fei Guo, Xiaojun Hartel, Martin C. He, Zihan Ho, John S. Hu, Youfan Huang, Qiyao Huang, Yu Huo, Fengwei Hussain, Muhammad M. Javey, Ali Jeong, Unyong Jiang, Chen Jiang, Xingyu Kang, Jiheong Karnaushenko, Daniil Khademhosseini, Ali Kim, Dae-Hyeong Kim, Il-Doo Kireev, Dmitry Kong, Lingxuan Lee, Chengkuo Lee, Nae-Eung Lee, Pooi See Lee, Tae-Woo Li, Fengyu Li, Jinxing Liang, Cuiyuan Lim, Chwee Teck Lin, Yuanjing Lipomi, Darren J. Liu, Jia Liu, Kai Liu, Nan Liu, Ren Liu, Yuxin Liu, Yuxuan Liu, Zhiyuan Liu, Zhuangjian Loh, Xian Jun Lu, Nanshu Lv, Zhisheng Magdassi, Shlomo Malliaras, George G. Matsuhisa, Naoji Nathan, Arokia Niu, Simiao Pan, Jieming Pang, Changhyun Pei, Qibing Peng, Huisheng Qi, Dianpeng Ren, Huaying Rogers, John A. Rowe, Aaron Schmidt, Oliver G. Sekitani, Tsuyoshi Seo, Dae-Gyo Shen, Guozhen Sheng, Xing Shi, Qiongfeng Someya, Takao Song, Yanlin Stavrinidou, Eleni Su, Meng Sun, Xuemei Takei, Kuniharu Tao, Xiao-Ming Tee, Benjamin C. K. Thean, Aaron Voon-Yew Trung, Tran Quang Wan, Changjin Wang, Huiliang Wang, Joseph Wang, Ming Wang, Sihong Wang, Ting Wang, Zhong Lin Weiss, Paul S. Wen, Hanqi Xu, Sheng Xu, Tailin Yan, Hongping Yan, Xuzhou Yang, Hui Yang, Le Yang, Shuaijian Yin, Lan Yu, Cunjiang Yu, Guihua Yu, Jing Yu, Shu-Hong Yu, Xinge Zamburg, Evgeny Zhang, Haixia Zhang, Xiangyu Zhang, Xiaosheng Zhang, Xueji Zhang, Yihui Zhang, Yu Zhao, Siyuan Zhao, Xuanhe Zheng, Yuanjin Zheng, Yu-Qing Zheng, Zijian Zhou, Tao Zhu, Bowen Zhu, Ming Zhu, Rong Zhu, Yangzhi Zhu, Yong Zou, Guijin Chen, Xiaodong 08-03 Innovis Singapore 138634 Republic of Singapore Innovative Centre for Flexible Devices (iFLEX) School of Materials Science and Engineering Nanyang Technological University Singapore 639798 Singapore Department of Biomedical Engineering University of Houston Houston Texas 77024 United States School of Electrical and Electronic Engineering Yonsei University Seoul 03722 Republic of Korea Department of Electrical and Computer Engineering The University of Texas at Austin Austin Texas 78712 United States Microelectronics Research Center The University of Texas at Austin Austin Texas 78758 United States Department of Chemistry and Biochemistry California NanoSystems Institute and Department of Psychiatry and Biobehavioral Sciences Semel Institute for Neuroscience and Human Behavior and Hatos Center for Neuropharmacology University of California Los Angeles Los Angeles California 90095 United States Colloid Chemistry Department Max Planck Institute of Colloids and Interfaces 14476 Potsdam Germany Department of Chemical Engineering Stanford University Stanford California 94305 United States Laboratory of Organic Electronics Department of Science and Technology Campus Norrköping Linköping University 83 Linköping Sweden Wallenberg Initiative Materials Science for Sustainability (WISE) and Wallenberg Wood Science Center (WWSC) SE-100 44 Stockholm Sweden Department of Materials Science and Engineering Stanford University Stanford California 94301 United States Department of Biomedical Engineering and Department of Materials Science and Engineering Carnegie Mellon University Pittsburgh Pennsylvania 15213 United States Department of Bioengineering University of California Los Angeles Los Angeles California 90095 United States School of Chemistry Chemical Engineering and Biotechnology Nanyang Technological University Singapore 637457 Singapore Nanobionics Group Department of Chemical and Biological Engineering Monash University Clayton Australia 3800 Monash

Humans rely increasingly on sensors to address grand challenges and to improve quality of life in the era of digitalization and big data. For ubiquitous sensing, flexible sensors are developed to overcome the limitations of conventional rigid counterparts. Despite rapid advancement in bench-side research over the last decade, the market adoption of flexible sensors remains limited. To ease and to expedite their deployment, here, we identify bottlenecks hindering the maturation of flexible sensors and propose promising solutions. We first analyze continued...challenges in achieving satisfactory sensing performance for real-world applications and then summarize issues in compatible sensor-biology interfaces, followed by brief discussions on powering and connecting sensor networks. Issues en route to commercialization and for sustainable growth of the sector are also analyzed, highlighting environmental concerns and emphasizing nontechnical issues such as business, regulatory, and ethical considerations. Additionally, we look at future intelligent flexible sensors. In proposing a comprehensive roadmap, we hope to steer research efforts towards common goals and to guide coordinated development strategies from disparate communities. Through such collab.rative

关键词： soft materials mechanics engineering flexible electronics conformable sensors bioelectronics human-machine interfaces body area sensor networks technology translation sustainable electronics

iSplit LBI: Individualized partial ranking with ties via split LBI

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arXiv 2019年

作者： Xu, Qianqian Sun, Xinwei Yang, Zhiyong Cao, Xiaochun Huang, Qingming Yao, Yuan Key Lab. of Intelligent Information Processing Institute of Computing Technology CAS Microsoft Research Asia State Key Laboratory of Information Security Institute of Information Engineering CAS School of Cyber Security University of Chinese Academy of Sciences School of Computer Science and Tech. University of Chinese Academy of Sciences Key Laboratory of Big Data Mining and Knowledge Management CAS Peng Cheng Laboratory Department of Mathematics Hong Kong University of Science and Technology Hong Kong

Due to the inherent uncertainty of data, the problem of predicting partial ranking from pairwise comparison data with ties has attracted increasing interest in recent years. However, in real-world scenarios, different individuals often hold distinct preferences. It might be misleading to merely look at a global partial ranking while ignoring personal diversity. In this paper, instead of learning a global ranking which is agreed with the consensus, we pursue the tie-aware partial ranking from an individualized perspective. Particularly, we formulate a unified framework which not only can be used for individualized partial ranking prediction, but also be helpful for abnormal user selection. This is realized by a variable splitting-based algorithm called iSplitLBI. Specifically, our algorithm generates a sequence of estimations with a regularization path, where both the hyperparameters and model parameters are updated. At each step of the path, the parameters can be decomposed into three orthogonal parts, namely, abnormal signals, personalized signals and random noise. The abnormal signals can serve the purpose of abnormal user selection, while the abnormal signals and personalized signals together are mainly responsible for individual partial ranking prediction. Extensive experiments on simulated and real-world datasets demonstrate that our new approach significantly outperforms state-of-the-art alternatives. The code is now availiable at https://***/qianqianxu010/ NeurIPS2019-iSplitLBI. Copyright © 2019, The Authors. All rights reserved.

关键词： Forecasting

A review of uncertainty quantification in deep learning: Techniques, applications and challenges

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arXiv 2020年

作者： Abdar, Moloud Pourpanah, Farhad Hussain, Sadiq Rezazadegan, Dana Liu, Li Ghavamzadeh, Mohammad Fieguth, Paul Cao, Xiaochun Khosravi, Abbas Rajendra Acharya, U. Makarenkov, Vladimir Nahavandi, Saeid Deakin University Australia College of Mathematics and Statistics Guangdong Key Lab. of Intelligent Information Processing Shenzhen University Shenzhen518060 China Dibrugarh University Dibrugarh India Department of Computer Science and Software Engineering Swinburne University of Technology Melbourne Australia Center for Machine Vision and Signal Analysis University of Oulu Oulu Finland Google research United States Department of Systems Design Engineering University of Waterloo Waterloo Canada State Key Laboratory of Information Security Institute of Information Engineering Chinese Academy of Sciences Beijing China Department of Electronics and Computer Engineering Ngee Ann Polytechnic Clementi Singapore Department of Computer Science University of Quebec in Montreal MontrealQC Canada

—Uncertainty quantification (UQ) plays a pivotal role in the reduction of uncertainties during both optimization and decision making, applied to solve a variety of real-world applications in science and engineering. Bayesian approximation and ensemble learning techniques are two of the most widely-used UQ methods in the literature. In this regard, researchers have proposed different UQ methods and examined their performance in a variety of applications such as computer vision (e.g., self-driving cars and object detection), image processing (e.g., image restoration), medical image analysis (e.g., medical image classification and segmentation), natural language processing (e.g., text classification, social media texts and recidivism risk-scoring), bioinformatics, etc. This study reviews recent advances in UQ methods used in deep learning, investigates the application of these methods in reinforcement learning, and highlight the fundamental research challenges and directions associated with the UQ field. Copyright © 2020, The Authors. All rights reserved.

关键词： Image segmentation