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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Yiqi Chen Xuanya Li Kai Hu Zhineng Chen Xieping Gao Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University Xiangtan China Baidu Inc Beijing China Chinese Academy of Sciences Institute of Automation Beijing China College of Medical Imaging and Inspection Xiangnan University Chenzhou China

ISBN: (数字)9781728162157

ISBN: (纸本)9781728162164

The histopathological analysis is the gold standard for assessing the presence and many complex diseases, like tumors. As one of the essential part of tumors, the shape, staining, and tissue distribution of the nuclei plays an important role in tumor diagnosis. However, due to nuclei congestion and possible occlusion, nuclei segmentation remains challenging. In this paper, we propose an automatic and effective nuclei segmentation method in histopathology images based on rotation equivariant and multi-level feature aggregation neural network (REMFANet). First, considering the inherent rotation equivariant of digital pathological images, we introduce group equivariant convolutions to improve the performance of the automatic segmentation of pathological images. Second, to eliminate the semantic gap between shallow features and deep features in encoder-decoder structural models, we propose a multi-level feature aggregation strategy based on U-Net 3+. Specifically, (1) we design a new decoder module to restore pixel-level predictions more accurately; (2) we propose an improved long-skip connection mode to provide richer semantic information in the decoder; (3) we also construct a semantic enhancement block to enhance the robustness of lowlevel semantic information. Finally, we evaluate our REMFA-Net on the MoNuSeg dataset and compare the results with seven state-of-the-art methods. Experimental results demonstrate the superiority of the proposed method over other models for the nuclei segmentation in histopathology images.

关键词： Semantics Image segmentation Feature extraction Decoding Convolution Neural networks Training

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Multiple reconstruction compression framework based on PNG image

arXiv

引用

arXiv 2019年

作者： Lu, Zhiqing Yin, Zhaoxia Luo, Bin Key Lab of Intelligent Computing and Signal Processing of Ministry of Education School of Computer Science and Technology Anhui University Hefei230601 China

It is shown that neural networks (NNs) achieve excellent performances in image compression and reconstruction. However, there are still many shortcomings in the practical application, which eventually lead to the loss of neural network image processing ability. Based on this, this paper proposes a joint framework based on neural network and zoom compression. The framework first encodes the incoming PNG or JPEG image information, and then the image is converted into binary input decoder to reconstruct the intermediate state image, next we import the intermediate state image into the zooming compressor and re-pressurize it, and reconstruct the final image. From the experimental results, this method can better process the digital image and suppress the reverse expansion problem, and the compression effect can be improved by 4 to 10 times as much as that of using RNN alone, showing better ability in application. In this paper, the method is transmitted over a digital image, the effect is far better than the existing compression method alone, the Human visual system can not feel the change of the effect. Copyright © 2019, The Authors. All rights reserved.

关键词： Image compression

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A New Free-Standing Aqueous Zinc-Ion Capacitor Based on MnO2–CNTs Cathode and MXene Anode

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Nano-Micro Letters 2019年第4期11卷 227-238页

作者： Siliang Wang Qiang Wang Wei Zeng Min Wang Limin Ruan Yanan Ma Key Laboratory of Intelligent Computing and Signal Processing Ministry of EducationAnhui UniversityNo.3 Feixi RoadHefei 230039Anhui ProvincePeople’s Republic of China National Engineering Research Center for Agro-Ecological Big Data Analysis and Application School of Electronics and Information EngineeringAnhui UniversityNo.111 Jiulong RoadHefei 230601Anhui ProvincePeople’s Republic of China School of Sciences Hubei University of Automotive TechnologyNo.167 Checheng West RoadShiyan 442002Hubei ProvincePeople’s Republic of China

Restricted by their energy storage mechanism,current energy storage devices have certain drawbacks,such as low power density for batteries and low energy density for ***,the nearest ion capacitors,such as lithium-ion and sodium-ion capacitors containing battery-type and capacitor-type electrodes,may allow achieving both high energy and power *** the inspiration,a new zinc-ion capacitor(ZIC)has been designed and realized by assembling the free-standing manganese dioxide-carbon nanotubes(MnO2-CNTs)battery-type cathode and MXene(Ti3C2Tx)capacitortype anode in an aqueous *** ZIC can avoid the insecurity issues that frequently occurred in lithium-ion and sodium-ion capacitors in organic *** expected,the ZIC in an aqueous liquid electrolyte exhibits excellent electrochemical performance(based on the total weight of cathode and anode),such as a high specific capacitance of 115.1 F g?1(1 mV s?1),high energy density of 98.6 Wh kg?1(77.5 W kg?1),high power density of 2480.6 W kg?1(29.7 Wh kg?1),and high capacitance retention of^83.6%of its initial capacitance(15,000 cycles).Even in an aqueous gel electrolyte,the ZIC also exhibits excellent *** work provides an essential strategy for designing next-generation high-performance energy storage devices.

关键词： Energy storage Zinc-ion capacitor Battery-type and capacitor-type electrodes MXene Electrochemical performance

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First-principle calculation of Chern number in gyrotropic photonic crystals

arXiv

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arXiv 2020年

作者： Zhao, Ran Xie, Guo-Da Chen, Menglin L.N. Lan, Zhihao Huang, Zhixiang Sha, Wei E.I. Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Anhui University Hefei230039 China Key Laboratory of Electromagnetic Environmental Sensing Department of Education of Anhui Province Hefei230039 China Department of Electrical and Electronic Engineering University of Hong Kong Hong Kong Department of Electronic and Electrical Engineering University College London United Kingdom Key Laboratory of Micro-nano Electronic Devices and Smart Systems of Zhejiang Province College of Information Science Electronic Engineering Zhejiang University Hangzhou310027 China

As an important figure of merit for characterizing the quantized collective behaviors of the wavefunction, Chern number is the topological invariant of quantum Hall insulators. Chern number also identifies the topological properties of the photonic topological insulators (PTIs), thus it is of crucial importance in PTI design. In this paper, we develop a first principle computatioal method for the Chern number of 2D gyrotropic photonic crystals (PCs), starting from the Maxwell’s equations. Firstly, we solve the Hermitian generalized eigenvalue equation reformulated from the Maxwell’s equations by using the full-wave finite-difference frequency-domain (FDFD) method. Then the Chern number is obtained by calculating the integral of Berry curvature over the first Brillouin zone. Numerical examples of both transverse-electric (TE) and transverse-magnetic (TM) modes are demonstrated, where convergent Chern numbers can be obtained using rather coarse grids, thus validating the efficiency and accuracy of the proposed method. Copyright © 2020, The Authors. All rights reserved.

关键词： Photonic crystals

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Automated Selection of Evolutionary Multi-objective Optimization Algorithms

Automated Selection of Evolutionary Multi-objective Optimiza...

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IEEE Symposium Series on Computational Intelligence (SSCI)

作者： Ye Tian Shichen Peng Tobias Rodemann Xingyi Zhang Yaochu Jin Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education Institutes of Physical Science and Information Technology Anhui University Hefei China Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Computer Science and Technology Anhui University Hefei China Honda Research Institute Europe Offenbach/Main Germany Department of Computer Science University of Surrey Guildford Surrey United Kingdom

ISBN: (数字)9781728124858

ISBN: (纸本)9781728124865

In the last two decades, many evolutionary algorithms have shown promising performance in solving a variety of multi-objective optimization problems (MOPs). Since there does not exist an evolutionary algorithm having the best performance on all the MOPs, it is unreasonable to use a single evolutionary algorithm to tackle all the MOPs. Since many real-world MOPs are computationally expensive, selecting the best evolutionary algorithm from multiple candidates via empirical comparisons is also impractical. To address the above issues, this paper proposes an automated algorithm selection method for choosing the most suitable evolutionary algorithm for a given MOP. The proposed method establishes a predictor based on the performance of a set of candidate evolutionary algorithms on multiple benchmark MOPs, where the inputs of the predictor are the explicit and implicit features of an MOP, and the output is the index of the evolutionary algorithm having the best performance on the MOP. Experimental results indicate that the evolutionary algorithm suggested by the proposed method is highly competitive among all the candidate evolutionary algorithms, demonstrating the practical value of the proposed method for engineers to select an evolutionary algorithm for their applications.

关键词： Evolutionary computation Benchmark testing Feature extraction Optimization Prediction algorithms Convergence Linear programming

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Bilingual Word Embedding with Sentence Combination CNN for 1-to-N Sentence Alignment 20

Bilingual Word Embedding with Sentence Combination CNN for 1...

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Proceedings of the 4th International Conference on Natural Language processing and Information Retrieval

作者： Xinyuan Ren Xiangling Fu Xuesi Zhou Chunsheng Liu Songfeng Gao Lei Peng School of Software Engineering Beijing University of Posts and Telecommunications Beijing China and Key Laboratory of Trustworthy Distributed Computing and Service Ministry of Education Beijing University of Posts and Telecommunications Beijing China Department of Electronic Engineering Tsinghua University Hai Dian Beijing China and Multimedia Signal and Intelligent Information Processing Lab Tsinghua University Hai Dian Beijing China BUPT and Huarong Joint lab of Smart Finance Beijing P. R. China and HuaRong RongTong (Beijing) Technology Co. Ltd Beijing P. R. China

ISBN: (纸本)9781450377607

Sentence alignment, as one of the most active and fundamental tasks in the field of natural language processing (NLP), is usually realized in two categories of methods. One is traditional methods which are firstly proposed, the other, which are adopted later, is based on the Neural Network method. Presently, under the limitation that the existing mainstream data corpora are mostly in the form of 1-to-1, the alignment models with relatively good performance mainly apply to the cases of 1-to-1 sentence alignment. However, under the circumstance that a sentence contains too much information, 1-to-N sentence alignment can actually have a better effect on sentence translation tasks, compared with the 1-to-1 form, since it is more flexible and can reduce the complexity of the original sentence. As a result, we attempt to exploit neural networks with relatively good performance in the cases of 1-to-1 to fit in the cases of 1-to-N. In this paper, a novel 1-N Bilingual word Embedding with Sentence Combination CNN Improved Framework (1-NBESCC) is proposed in order to align 1-to-N sentences more precisely. Experiments show that our proposed model performs as good as the traditional methods such as BLEUALIGN in 1-to-1 situation, but much better in 1-to-N situation.

关键词： Convolutional Neural Network

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Multi-Adapter RGBT Tracking

Multi-Adapter RGBT Tracking

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International Conference on Computer Vision Workshops (ICCV Workshops)

作者： Cheng Long Li Andong Lu Ai Hua Zheng Zhengzheng Tu Jin Tang Anhui University Hefei China Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Computer Science and Technology Anhui University Hefei China Key Laboratory of Industrial Image Processing and Analysis of Anhui Province Hefei China

ISBN: (数字)9781728150239

ISBN: (纸本)9781728150246

The task of RGBT tracking aims to take the complementary advantages from visible spectrum and thermal infrared data to achieve robust visual tracking, and receives more and more attention in recent years. Existing works focus on modality-specific information integration by introducing modality weights to achieve adaptive fusion or learning robust feature representations of different modalities. Although these methods could effectively deploy the modality-specific properties, they ignore the potential values of modality-shared cues as well as instance-aware information, which are crucial for effective fusion of different modalities in RGBT tracking. In this paper, we propose a novel Multi-Adapter convolutional Network (MANet) to jointly perform modality-shared, modality-specific and instance-aware feature learning in an end-to-end trained deep framework for RGBT tracking. We design three kinds of adapters within our network. In a specific, the generality adapter is to extract shared object representations, the modality adapter aims at encoding modality-specific information to deploy their complementary advantages, and the instance adapter is to model the appearance properties and temporal variations of a certain object. Moreover, to reduce computational complexity for real-time demand of visual tracking, we design a parallel structure of generic adapter and modality adapter. Extensive experiments on two RGBT tracking benchmark datasets demonstrate the outstanding performance of the proposed tracker against other state-of-the-art RGB and RGBT tracking algorithms.

关键词： Adaptation models Robustness Target tracking Feature extraction Visualization Task analysis

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Click-iG: Simultaneous Enrichment and Profiling of Intact N-linked, O-GalNAc, and O-GlcNAcylated Glycopeptides

引用

Angewandte Chemie 2023年第36期135卷

作者： Dr. Jialin Liu Dr. Bo Cheng Dr. Xinqi Fan Xinyue Zhou Jiankun Wang Dr. Wen Zhou Hengyu Li Dr. Wenfeng Zeng Prof. Pengyuan Yang Prof. Xing Chen College of Chemistry and Molecular Engineering Beijing National Laboratory for Molecular Sciences Peking-Tsinghua Center for Life Sciences Synthetic and Functional Biomolecules Center and Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education Peking University Beijing 100871 China Institute of Biomedical Sciences and Department of Chemistry Fudan University Shanghai 200433 China Key Lab of Intelligent Information Processing of Chinese Academy of Sciences (CAS) and Institute of Computing Technology CAS Beijing 100190 China Deseased

Proteins are ubiquitously modified with glycans of varied chemical structures through distinct glycosidic linkages, making the landscape of protein glycosylation challenging to map. Profiling of intact glycopeptides with mass spectrometry (MS) has recently emerged as a powerful tool for revealing matched information of the glycosylation sites and attached glycans (i.e., intact glycosites), but is largely limited to individual glycosylation types. Herein, we describe Click-iG, which integrates metabolic labeling of glycans with clickable unnatural sugars, an optimized MS method, and a tailored version of pGlyco3 software to enable simultaneous enrichment and profiling of three types of intact glycopeptides: N-linked, mucin-type O-linked, and O-GlcNAcylated glycopeptides. We demonstrate the utility of Click-iG by the identification of thousands of intact glycosites in cell lines and living mice. From the mouse lung, heart, and spleen, a total of 2053 intact N-glycosites, 262 intact O-GalNAc glycosites, and 1947 O-GlcNAcylation sites were identified. Click-iG-enabled comprehensive coverage of the protein glycosylation landscape lays the foundation for interrogating crosstalk between different glycosylation pathways.

关键词： Glycoproteomics Glycosylation Intact Glycosites Metabolic Labeling Unnatural Glycans

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Algebraic multigrid block preconditioning for multi-group radiation diffusion equations

arXiv

引用

arXiv 2020年

作者： Yue, Xiaoqiang Zhang, Shulei Xu, Xiaowen Shu, Shi Shi, Weidong School of Mathematics and Computational Science Hunan Key Laboratory for Computation and Simulation in Science and Engineering Key Laboratory of Intelligent Computing & Information Processing of Ministry of Education Xiangtan University Xiangtan411105 China Laboratory of Computational Physics Institute of Applied Physics and Computational Mathematics Beijing100088 China School of Applied Mathematics Shanxi University of Finance and Economics Taiyuan030006 China

The paper focuses on developing and studying efficient block preconditioners based on classical algebraic multigrid for the large-scale sparse linear systems arising from the fully coupled and implicitly cell-centered finite volume discretization of multi-group radiation diffusion equations, whose coefficient matrices can be rearranged into the (G + 2) × (G + 2) block form, where G is the number of energy groups. The preconditioning techniques are based on the monolithic classical algebraic multigrid method, physical-variable based coarsening two-level algorithm and two types of block Schur complement preconditioners. The classical algebraic multigrid is applied to solve the subsystems that arise in the last three block preconditioners. The coupling strength and diagonal dominance are further explored to improve performance. We use representative one-group and twenty-group linear systems from capsule implosion simulations to test the robustness, efficiency, strong and weak parallel scaling properties of the proposed methods. Numerical results demonstrate that block preconditioners lead to mesh- and problem-independent convergence, and scale well both algorithmically and in parallel. Copyright © 2020, The Authors. All rights reserved.

关键词： Finite volume method

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Object tracking by the least spatiotemporal searches

arXiv

引用

arXiv 2020年

作者： Yu, Zhiyong Han, Lei Chen, Chao Guo, Wenzhong Yu, Zhiwen College of Mathematics and Computer Sciences Fuzhou University Key Laboratory of Spatial Data Mining and Information Sharing Ministry of Education Fujian Key Laboratory of Network Computing and Intelligent Information Processing Fuzhou350108 China School of Computer Science Northwestern Polytechnical University Xi'an710072 China School of Computer Science Chongqing University Chongqing400044 China

Tracking a suspicious car or a person in a city efficiently is crucial in urban safety management. But how can we complete the task with the minimal number of spatiotemporal searches when massive camera records are involved? To this end, this study proposes a strategy named intermediate searching at heuristic moments (IHMs). At each step, we determine which moment is the best one for the search based on a heuristic indicator. Then, at that moment, locations are searched one by one in descending order of predicted appearing probabilities until a search hit is obtained. We iterate this step until we derive the object's current location. Five searching strategies are compared via experiments. Among these strategies, the IHMs strategy is validated as the most efficient. IHMs can save up to 1/3 of the total cost. This result provides evidence that "searching at intermediate moments can save cost. Copyright © 2020, The Authors. All rights reserved.

关键词： Heuristic algorithms

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