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arXiv 2024年

作者： Fan, Xiaohong Chen, Ke Yi, Huaming Yang, Yin Zhang, Jianping The School of Mathematics and Computational Science Xiangtan University Hunan Key Laboratory for Computation and Simulation in Science and Engineering Xiangtan411105 China The Centre for Mathematical Imaging Techniques Department of Mathematical Sciences The University of Liverpool LiverpoolL6972L United Kingdom The School of Mathematics and Computational Science Xiangtan University Hunan National Applied Mathematics Center Xiangtan411105 China The School of Mathematics and Computational Science Xiangtan University Key Laboratory of Intelligent Computing & Information Processing of Ministry of Education Xiangtan411105 China

X-ray Computed Tomography (CT) is one of the most important diagnostic imaging techniques in clinical applications. Sparse-view CT imaging reduces the number of projection views to a lower radiation dose and alleviates the potential risk of radiation exposure. Most existing deep learning (DL) and deep unfolding sparse-view CT reconstruction methods: 1) do not fully use the projection data;2) do not always link their architecture designs to a mathematical theory;3) do not flexibly deal with multi-sparse-view reconstruction assignments. This paper aims to use mathematical ideas and design optimal DL imaging algorithms for sparse-view CT reconstructions. We propose a novel dual-domain unified framework that offers a great deal of flexibility for multi-sparse-view CT reconstruction through a single model. This framework combines the theoretical advantages of model-based methods with the superior reconstruction performance of DL-based methods, resulting in the expected generalizability of DL. We propose a refinement module that utilizes unfolding projection domain to refine full-sparse-view projection errors, as well as an image domain correction module that distills multi-scale geometric error corrections to reconstruct sparse-view CT. This provides us with a new way to explore the potential of projection information and a new perspective on designing network architectures. The multi-scale geometric correction module is end-to-end learnable, and our method could function as a plug-and-play reconstruction technique, adaptable to various applications. Extensive experiments demonstrate that our framework is superior to other existing state-of-the-art methods. Our source codes are available at https://***/fanxiaohong/MVMS-RCN. Copyright © 2024, The Authors. All rights reserved.

关键词： Geometry

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DeepContact: High throughput quantification of membrane contact site based on electron microscopy imaging

DeepContact: High throughput quantification of membrane cont...

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2022生物物理大会

作者： Liqing Liu Shuxin Yang Yang Liu Xixia Li Junjie Hu Li Xiao Tao Xu National Laboratory of Biomacromolecules Institute of Biophysics Chinese Academy of Sciences Center for Biological Imaging Institute of Biophysics Chinese Academy of Sciences Key Laboratory of Intelligent Information Processing Institute of Computing TechnologyChinese Academy of Sciences School of Computer and Control Engineering University of Chinese Academy of Sciences College of Life Science University of Chinese Academy of Sciences Ningbo HuaMei Hospital University of Chinese Academy of Sciences School of Biomedical Engineering Guangzhou Medical University

Membrane contact site (MCS)-mediated organelle interactions plays essential roles in the cell. Quantitative analysis of the MCS reveals vital clues for cellular responses under various physiological and pathological conditions. However, an efficient tool is lacking. Here, we developed "DeepContact", a deep learning protocol for optimizing organelle segmentation and contact analysis based on label-free electron microscopy(EM).

关键词： DeepContact High throughput quantification of membrane contact site based on electron microscopy imaging

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Remote sensing identification of shrub encroachment in grassland in Inner Mongolia

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Nongye Gongcheng Xuebao/Transactions of the Chinese Society of Agricultural Engineering 2014年第11期30卷 152-158页

作者： Dong, Zhou Zhao, Xia Liang, Dong Huang, Wenjiang Peng, Dailiang Huang, Linsheng Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Anhui University Hefei 230039 China School of Electronic and Information Engineering Anhui University Hefei 230039 China Key Laboratory of Digital Earth Science Institute of Remote Sensing and Digital Earth Chinese Academy of Sciences Beijing 100094 China State Key Laboratory of Vegetation and Environmental Change Institute of Botany Chinese Academy of Sciences Beijing 100093 China

Shrub encroachment has been a wide phenomenon across the arid and semi-arid grasslands in Inner Mongolia, China. Although numerous studies have investigated the effect of this phenomenon on community composition, ecosystem structure, and nutrient cycling, reports on the distribution patterns of shrub encroachment are limited. A recent development in satellite remote sensing enables accurate assessment of shrub distribution and its dynamics at large scales. In this paper, the combined ground survey in Xianghuangqi, four satellite images (with spatial resolution of 5.8 m) of ZY-3, covering nearly the whole area and taken between July and August in 2013, were used to identify the shrub distribution in this region. It should be noted that the shrub here indicated the shrub-grass mosaic due to the mixed pixel effect, and the identification was weak when the coverage of shrub was on low levels. The NDVI threshold method was first used to extract the vegetation coverage area, and then three traditional pixel-oriented methods (Support vector machine, Maximum likelihood and Mahalanobis distance), compared with the object-oriented method, were used for the classification of images. Object-oriented method is different from the traditional one, in that the classification is not based on the spectral characteristics of individual pixel, but relies on the image object with spatial texture and shape and size characteristics. Ground survey data were used to compare the accuracy level of these methods. It indicated that the shrub recognition accuracy by using support vector machine algorithm is the highest among the three pixel-oriented methods, with higher producer accuracy and user accuracy than the other two algorithms. Furthermore, the overall classification accuracy of this algorithm is 81.15% higher than that of the maximum likelihood (73.33%) and the Mahalanobis distance (61.77%). However, the overall recognition accuracy by using the object-oriented approach (combined scale

关键词： Maximum likelihood

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Evidence-Aware Multi-Modal Data Fusion and its Application to Total Knee Replacement Prediction

Evidence-Aware Multi-Modal Data Fusion and its Application t...

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Proceedings of the digital Image computing: Technqiues and Applications (DICTA)

作者： Xinwen Liu Jing Wang S. Kevin Zhou Craig Engstrom Shekhar S. Chandra School of Electrical Engineering and Computer Science The University of Queensland Brisbane Australia The Commonwealth Scientific and Industrial Research Organisation Canberra Australia Center for Medical Imaging Robotics Analytic Computing & Learning (MIRACLE) School of Biomedical Engineering & Suzhou Institute for Advanced Research University of Science and Technology of China Suzhou China Key Laboratory of Intelligent Information Processing of Chinese Academy of Sciences (CAS) Institute of Computing Technology CAS Beijing China School of Human Movement and Nutrition Sciences The University of Queensland Brisbane Australia

ISBN: (数字)9798350379037

ISBN: (纸本)9798350379044

Deep neural networks have been widely studied to predict a medical condition, such as total knee replacement (TKR). It has shown that data of different modalities, such as imaging data, clinical variables, and demographic information, provide complementary information and thus can improve the prediction accuracy together. However, the data sources of various modalities may not always be of high quality, and each modality may have only partial information of medical condition. Thus, predictions from different modalities can be in conflict, and the final prediction may fail in the presence of such a conflict. Therefore, it is important to account for the reliability of each source data and the prediction output when making a final decision. In this paper, we propose an evidence-aware multimodal data fusion framework based on the Dempster-Shafer theory (DST). The backbone models contain an image branch, a non-image branch and a fusion branch. For each branch, there is an evidence network that takes the extracted features as input and outputs an evidence score, which is designed to represent the reliability of the output from the current branch. The output probabilities along with the evidence scores from multiple branches are combined with the Dempster's combination rule to make a final prediction. Experimental results on the public OA initiative (OAI) dataset for the TKR prediction task show that the proposed method has better performance by accounting for conflicts from various modalities.

关键词： Medical conditions Soft sensors digital images Data integration imaging Artificial neural networks Reliability theory Feature extraction Reliability engineering Knee replacement

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Forecasting wheat aphid with remote sensing based on relevance vector machine

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Nongye Gongcheng Xuebao/Transactions of the Chinese Society of Agricultural Engineering 2015年第6期31卷 201-207页

作者： Tang, Cuicui Huang, Wenjiang Luo, Juhua Liang, Dong Zhao, Jinling Huang, Linsheng Key Laboratory of Intelligent Computing & Signal Processing Ministry of Education Anhui University Hefei230039 China School of Electronic and Information Engineering Anhui University Hefei230039 China Key Laboratory of Digital Earth Science Institute of Remote Sensing and Digital Earth Chinese Academy of Sciences Beijing100094 China Nanjing Institute of Geography and Limnology Chinese Academy of Sciences Nanjing210008 China

The prevalence of aphid in winter wheat field has a significant impact on the production of winter wheat. An effective and timely forewarning of the scope and severity of the disease at a regional scale will not only reduce yield losses but also alert the stakeholders to take effective preventive measures. Forecasting aphid occurrence with Remote Sensing has great advantages over traditional methods and meteorological data, such as lower cost, simpler operation, more real-time and higher resolution. Chinese HJ-1A/1B data which have a high revisit frequency ( ©, 2015, Chinese Society of Agricultural Engineering. All right reserved.

关键词： Satellite imagery

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Balancing Exploration and Exploitation for Solving Large-scale Multiobjective Optimization via Attention Mechanism

arXiv

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arXiv 2022年

作者： Hong, Haokai Jiang, Min Feng, Liang Lin, Qiuzhen Tan, Kay Chen School of Informatics Xiamen University Fujian China College of Computer Science Chongqing University Chongqing China College of Computer Science and Software Engineering Shenzhen University Guangdong China Department of Computing The Hong Kong Polytechnic University Hong Kong The Department of Artificial Intelligence Key Laboratory of Digital Protection and Intelligent Processing of Intangible Cultural Heritage of Fujian and Taiwan Ministry of Culture and Tourism School of Informatics Xiamen University Fujian361005 China

Large-scale multiobjective optimization problems (LSMOPs) refer to optimization problems with multiple conflicting optimization objectives and hundreds or even thousands of decision variables. A key point in solving LSMOPs is how to balance exploration and exploitation so that the algorithm can search in a huge decision space efficiently. Large-scale multiobjective evolutionary algorithms consider the balance between exploration and exploitation from the individual's perspective. However, these algorithms ignore the significance of tackling this issue from the perspective of decision variables, which makes the algorithm lack the ability to search from different dimensions and limits the performance of the algorithm. In this paper, we propose a large-scale multiobjective optimization algorithm based on the attention mechanism, called (LMOAM). The attention mechanism will assign a unique weight to each decision variable, and LMOAM will use this weight to strike a balance between exploration and exploitation from the decision variable level. Nine different sets of LSMOP benchmarks are conducted to verify the algorithm proposed in this paper, and the experimental results validate the effectiveness of our design. Copyright © 2022, The Authors. All rights reserved.

关键词： Multiobjective optimization

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Nitrogen vertical distribution by canopy reflectance spectrum in winter wheat

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IOP Conference Series: Earth and Environmental Science 2014年第1期17卷

作者： W J Huang Q Y Yang D L Peng L S Huang D Y Zhang G J Yang Key Laboratory of Digital Earth Science Institute of Remote Sensing and Digital Earth Chinese Academy of Sciences Beijing 100094 China Key Laboratory of Intelligent Computing & Signal Processing Ministry of Education Anhui University Hefei 230039 Anhui China Beijing Agriculture Information Technology Research Center Beijing 100097 China

Nitrogen is a key factor for plant photosynthesis, ecosystem productivity and leaf respiration. Under the condition of nitrogen deficiency, the crop shows the nitrogen deficiency symptoms in the bottom leaves, while excessive nitrogen will affect the upper layer leaves first. Thus, timely measurement of vertical distribution of foliage nitrogen content is critical for growth diagnosis, crop management and reducing environmental impact. This study presents a method using bi-directional reflectance difference function (BRDF) data to invert foliage nitrogen vertical distribution. We developed upper-layer nitrogen inversion index (ULNI), middle-layer nitrogen inversion index (MLNI) and bottom-layer nitrogen inversion index (BLNI) to reflect foliage nitrogen inversion at upper layer, middle layer and bottom layer, respectively. Both ULNI and MLNI were made by the value of the ratio of Modified Chlorophyll Absorption Ration Index to the second Modified Triangular Vegetation Index (MCARI/MTVI2) referred to as canopy nitrogen inversion index (CNII) in this study at ±40° and ±50°, and at ±30° and ±40° view angles, respectively. The BLNI was composed by the value of nitrogen reflectance index (NRI) at ±20° and ±30° view angles. These results suggest that it is feasible to measure foliage nitrogen vertical-layer distribution in a large scale by remote sensing.

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Direct speech-to-image translation

arXiv

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arXiv 2020年

作者： Li, Jiguo Zhang, Xinfeng Jia, Chuanmin Xu, Jizheng Zhang, Li Wang, Yue Ma, Siwei Gao, Wen Key Lab of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences Beijing100190 China University of Chinese Academy of Sciences Beijing100049 China National Engineering Laboratory for Video Technology School of Electronic Engineering and Computer Science Peking University Beijing100871 China School of Computer Science and Technology University of Chinese Academy of Sciences Beijing100049 China Institute of Digital Media School of Electronic Engineering and Computer Science Peking University Beijing100871 China Peng Cheng Lab Shenzhen China Bytedance Inc

Direct speech-to-image translation without text is an interesting and useful topic due to the potential applications in human-computer interaction, art creation, computer-aided design. etc. Not to mention that many languages have no writing form. However, as far as we know, it has not been well-studied how to translate the speech signals into images directly and how well they can be translated. In this paper, we attempt to translate the speech signals into the image signals without the transcription stage. Specifically, a speech encoder is designed to represent the input speech signals as an embedding feature, and it is trained with a pretrained image encoder using teacher-student learning to obtain better generalization ability on new classes. Subsequently, a stacked generative adversarial network is used to synthesize high-quality images conditioned on the embedding feature. Experimental results on both synthesized and real data show that our proposed method is effective to translate the raw speech signals into images without the middle text representation. Ablation study gives more insights about our method. Copyright © 2020, The Authors. All rights reserved.

关键词： Generative adversarial networks

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Automated identification and quantification of myocardial inflammatory infiltration in digital histological images to diagnose myocarditis

arXiv

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arXiv 2023年

作者： Liu, Yanyun Hua, Xiumeng Zhu, Shouping Wang, Congrui Chen, Xiao Shi, Yu Song, Jiangping Zhou, Weihua School of Life Science and Technology Xidian University Engineering Research Center of Molecular and Neuro Imaging Ministry of Education Shaanxi Xi'An China Xi'an Key Laboratory of Intelligent Sensing and Regulation of Trans-Scale Life Information International Joint Research Center for Advanced Medical Imaging and Intelligent Diagnosis and Treatment School of Life Science and Technology Xidian University Shaanxi Xi'An China Innovation Center for Advanced Medical Imaging and Intelligent Medicine Guangzhou Institute of Technology Xidian University Guangdong Guangzhou China Beijing Key Laboratory of Preclinical Research and Evaluation for Cardiovascular Implant Materials Animal Experimental Centre Fuwai Hospital National Centre for Cardiovascular Disease Chinese Academy of Medical Sciences Peking Union Medical College Beijing China State Key Laboratory of Cardiovascular Disease Fuwai Hospital National Center for Cardiovascular Diseases Chinese Academy of Medical Sciences Peking Union Medical College 167A Beilishi Road Xi Cheng District Beijing China Department of Cardiovascular Surgery Fuwai Hospital National Center for Cardiovascular Diseases National Clinical Research Center of Cardiovascular Diseases State Key Laboratory of Cardiovascular Disease Chinese Academy of Medical Sciences Peking Union Medical College Beijing China The Cardiomyopathy Research Group Fuwai Hospital Beijing China Department of Applied Computing Michigan Technological University HoughtonMI United States Center for Biocomputing and Digital Health Institute of Computing and Cybersystems Health Research Institute Michigan Technological University HoughtonMI United States

Background Given the dimensionality of WSIs and the increase in the number of potential cases, the manual histological diagnosis of myocarditis based on Dallas Criteria is time-consuming, experience-dependent. Objectives To overcome the limitations of manual diagnosis methods, this study aims to develop a new computational pathology approach that automates the identification and quantification of myocardial inflammatory infiltration in digital hematoxylin and eosin (HE)-stained images to assist pathologists in diagnosing myocarditis. Methods 898 HE-stained whole slide images (WSIs) of myocardium from 154 heart transplant patients diagnosed with myocarditis or dilated cardiomyopathy (DCM) were included in this study. An automated deep-learning (DL)-based computational pathology approach was developed to identify nuclei and detect myocardial inflammatory infiltration, enabling the quantification of the lymphocyte nuclear density (LND) on myocardial WSIs. A cutoff value based on the quantification of LND was proposed to determine if the myocardial inflammatory infiltration was present. The performance of our approach was evaluated with a five-fold cross-validation experiment, tested with an internal test set from the myocarditis group, and confirmed by an external test from a double-blind trial group. Results An LND of 1.02/mm2 could distinguish WSIs with myocarditis from those without. The accuracy, sensitivity, specificity, and area under the receiver operating characteristic curve (AUC) in the five-fold cross-validation experiment were 0.899 ± 0.035, 0.971 ± 0.017, 0.728 ± 0.073 and 0.849 ± 0.044, respectively. For the internal test set, the accuracy, sensitivity, specificity, and AUC were 0.887, 0.971, 0.737, and 0.854, respectively. The accuracy, sensitivity, specificity, and AUC for the external test set reached 0.853, 0.846, 0.858, and 0.852, respectively. Conclusion Our new approach provides accurate and reliable quantification of the LND of myocardial WSIs bas

关键词： Pathology

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The 5th International Conference on Biomedical Engineering and Biotechnology (ICBEB 2016) Abstracts

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BMC MEDICAL imaging 2016年第SUPPL 1期16卷 65-65页

作者： [Anonymous] Department of MRI Shandong Medical Imaging Research Institute Affiliated to Shandong University Jinan Shandong 250021 People’s Republic of China Department of Interventional Radiology Shandong Provincial Hospital Affiliated to Shandong University Jinan Shandong 250021 People’s Republic of China College of Information Science and Technology Engr. Research Center of Digitized Textile & Fashion Tech. for Ministry of Education Donghua University Shanghai 201620 China Intelligent multimedia information processing Lab College of Software Northeastern University Shenyang Liaoning Province 110004 China Institute of Biomedical and Health Engineering Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences Shenzhen 518055 China School of Computer Science and Technology Nanjing Normal University Nanjing China Department of Electrical Engineering The City College of New York CUNY New York USA Jiangsu Key Laboratory of 3D Printing Equipment and Manufacturing Nanjing China School of Electronic Science and Engineering Nanjing University Nanjing Jiangsu 210046 China College of Engineering Nanyang Technological University Singapore 639798 Singapore School of Electronic Information Shanghai Dianji University Shanghai China School of Natural Sciences and Mathematics Shepherd University Shepherdstown WV 25443 USA Davis College of Agriculture Natural Resources and Design West Virginia University Morgantown WV 26505 USA State Key Laboratory of Millimeter Waves Southeast University Nanjing 210096 China Center of Medical Physics and Technology Hefei Institutes of Physical Science Chinese Academy of Sciences Hefei China College of Agricultural and Life Sciences University of Florida Gainesville FL 32611 USA Courant Institute of Mathematical Sciences New York University New York NY 10012 USA Translational Imaging Division & MRI Unit Columbia University and New York State Psychiatric Institute New York NY 10032 USA Guangxi Key Laboratory of Manufacturing System & Adv

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