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Fuzzy DNA Strand Displacement: A Strategy to Decrease the Complexity of DNA Network Design

Angewandte Chemie 2020年第35期132卷 15089-15095页

作者： Wang Z. Hu Y. Pan L. Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China School of Artificial Intelligence and Automation Huazhong University of Science and Technology 1037 Luoyu Road Wuhan 430074 China College of Information Science and Technology Shijiazhuang Tiedao University Shijiazhuang 050043 China

Toehold-mediated DNA strand displacement endows DNA nanostructures with dynamic response capability. However, the complexity of sequence design dramatically increases as the size of the DNA network increases. We attribute this problem to the mechanism of toehold-mediated strand displacement, termed exact strand displacement (ESD), in which one input strand corresponds to one specific substrate. In this work, we propose an alternative to toehold-mediated DNA strand displacement, termed fuzzy strand displacement (FSD), in which one-to-many and many-to-one relationships are established between the input strand and the substrate, to reduce the complexity. We have constructed four modules, termed converter, reporter, fuzzy detector, and fuzzy trigger, and demonstrated that a sequence pattern recognition network composed of these modules requires less complex sequence design than an equivalent network based on toehold-mediated DNA strand displacement. © 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim

关键词： DNA recognition DNA structures enzymes molecular devices self-assembly

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Causal Invariant Hierarchical Molecular Representation for Out-of-distribution Molecular Property Prediction

Causal Invariant Hierarchical Molecular Representation for O...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Xinlong Wen Yifei Guo Shuoying Wei Wenhan Long Lida Zhu Rongbo Zhu Huazhong Agricultural University Wuhan China College of Informatics Huazhong Agricultural University Wuhan China Shenzhen Institute of Nutrition and Health Huazhong Agricultural University Shenzhen China Shenzhen Branch Guangdong Laboratory for Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of Agriculture and Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences Shenzhen China Engineering Research Center of Intelligent Technology for Agriculture Ministry of Education Wuhan China Huazhong University of Science and Technology Wuhan China Key Laboratory of Ministry of Education for Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

Molecular representation learning is widely used in the field of drug discovery, due to its ability to accurately capture the complex features of compounds in high-dimensional space. However, existing molecular representation learning models are prone to be influenced by spurious parts during distribution shifts (also known as out-of-distribution, or OOD), which results in models mistakenly treating these spurious parts as crucial features of molecules, thereby limiting the generalization capability of the models. To tackle this issue, a novel invariant molecular representation learning model, called Causal Invariant Hierarchical Molecular Representation Graph Neural Networks (CHiMoGNN), is proposed for OOD molecular property prediction. In CHiMoGNN, a Feature Enhancement (FE) module is designed to leverage the multi-level molecular parts to enhance the expression of invariant features, thereby enhancing the model’s capability to capture key molecular information. In addition, a Cartesian Product based Environmental Impact (EI) module is adopted to generate counterfactual samples with environmental diversity. Consequently, these samples are utilized to train a classifier that maintains consistent performance across various environments. Extensive experiments on seven real-world datasets demonstrate that CHiMoGNN outperforms 9 state-of-the-art models, achieving a 5.73% increase in average ROC-AUC, and the results also show that CHiMoGNN can effectively maintain generalization in various distribution shifts. Code and datasets are available at https://***/Chertuion/CHiMoGNN.

关键词： Representation learning Limiting Codes Predictive models Feature extraction Iron Graph neural networks Drug discovery Data mining Compounds

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Integrated optimization of Order Batching and Distribution based on EDA

Integrated optimization of Order Batching and Distribution b...

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第32届中国控制与决策会议

作者： Shunli Feng Yindong Shen Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and AutomationHuazhong University of science and technology

The order picking and distribution are two necessary activities in logistics,the cost of which accounts for a considerable portion of the logistics *** there are dependencies between these two activities,a lot of work has been carried out on them independently;hence,the optimization may be *** paper proposes an integrated order batching and distribution *** objectives are to minimize the makespan（including picking time and delivery time） and to minimize the number of delivery *** solve the integrated model,an EDA approach is devised,in which an elaborate encoding/decoding method is employed and an incremental learning probability model is *** show that the proposed integrated model and its solution approach can lead to a significant reduction in the total cost（weighted sum of the makespan and the number of delivery trips）.

关键词： Order Batching Order picking Logistics Distribution EDA approach

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Grey Wolf Optimization Based Self-Organizing Fuzzy Multi-Objective Evolution Algorithm

Research Square

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Research Square 2021年

作者： Xie, Jialiang Zhang, Shanli Wang, Honghui Wu, Dongrui School of Science Jimei University Xiamen361021 China School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China Key Laboratory of the Ministry of Education for Image Processing and Intelligent Control China

Two goals of multi-objective evolutionary algorithms are effectively improving its convergence and diversity, and making the Pareto set evenly distributed and close to the real Pareto Front. This paper proposes a grey wolf optimization based self-organizing fuzzy multi-objective evolutionary algorithm. Grey wolf optimization algorithm is used to optimize the initial weights of the self-organizing map network. New neighborhood relationships for individuals are built by self-organizing map, which can maintain the invariance of feature distribution and map the structural information of the current population into Pareto Sets. Based on this neighborhood relationship, this paper uses the fuzzy differential evolution operator, which constructs a fuzzy inference system to dynamically adjust the weighting parameter in the differential operator, to generate a new initial solution, and the polynomial mutation operator to refine them. Boundary processing is then conducted. Experiments on fifteen test problems were conducted to verify its effectiveness. Results show that the convergence and diversity of the proposed algorithm are better than several state-of-the-art multi-objective evolutionary algorithms. © 2021, CC BY.

关键词： Self organizing maps

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Vision-based Autonomous Landing of Unmanned Aerial Vehicle on a Motional Unmanned Surface Vessel

Vision-based Autonomous Landing of Unmanned Aerial Vehicle o...

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第三十九届中国控制会议

作者： Zhe-Cheng Xu Bin-Bin Hu Bin Liu XD Wang Hai-Tao Zhang School of Artificial Intelligence and Automation the Key Laboratory of Image Processing and Intelligent ControlHuazhong University of Science and Technology

This paper has developed a vision-based control approach for autonomous tracking and landing on a motional Unmanned surface vessel（USV） with an unmanned aerial vehicle（UAV）. First, a novel three-stage visual detection method is proposed to estimate the relative 3 D position between UAV and USV, where the USV stays in a suitable view of the camera of the UAV. Then a PID controller is designed to regulate the attitude of the quadrotor and the movement of the vessel, which enables the successful landing procedure of the UAV on a motional USV. Finally, lake experiments are conducted to verify the effectiveness of the proposed algorithm.

关键词： Autonomous landing Unmanned aerial vehicle Unmanned surface vessel Computer vision

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A Pushing-Grasping Collaborative Method Based on Deep Q-Network Algorithm in Dual Viewpoints

Research Square

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Research Square 2021年

作者： Peng, Gang Liao, Jinhu Guan, Shangbin Yang, Jin Li, Xinde School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China Key Laboratory of Image Processing and Intelligent Control Ministry of Education China School of Automation South East University Nanjing China

In the field of intelligent manufacturing, robot grasping and sorting is an important content. However, in the traditional 2D camera-based robotic arm grasping method, the grasping efficiency is low and the grasping accuracy is low when facing the scene of stacking and occlusion. Insufficiency and other issues, a dual perspective-based deep reinforcement learning promotion and capture method is proposed. In this case, a novel method of pushing-grasping collaborative based on the deep Q-network in dual viewpoints is proposed in this paper. This method adopts an improved deep Q-network algorithm, with an RGB-D camera to obtain the information of objects’ RGB images and point clouds from two viewpoints, and combines the pushing and grasping actions, so that the trained manipulator can make the scenes better for grasping, so that it can perform well in more complicated grasping scenes. What’s more, we improved the reward function of the deep Q-network and propose the piecewise reward function to speed up the convergence of the deep Q-network. We trained different models and tried different methods in the V-REP simulation environment, and it drew a conclusion that the method proposed in this paper converges quickly and the success rate of grasping objects in unstructured scenes raises up to 83.5%. Besides, it shows the generalization ability and well performance when novel objects appear in the scenes that the manipulator has never grasped before. © 2021, CC BY.

关键词： Manipulators

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Stability of partially unstable discrete-time switched positive nonlinear systems with delays

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Applied Mathematics and Computation 2025年 507卷

作者： Ni, Jinyuan Sheng, Yin Xiao, Qiang Zeng, Zhigang Huang, Tingwen School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China the Key Laboratory of Image Processing and Intelligent Control Huazhong University of Science and Technology Wuhan China Faculty of Computer Science and Control Engineering Shenzhen University of Advanced Technology Shenzhen China

This paper addresses the stability issue of discrete-time switched positive nonlinear systems (SPNSs) characterized by partial unstable subsystems and constant delays. Firstly, we use a parameter to constrain the ratio of active durations of the stable and unstable modes, and derive the exponential stability conditions for SPNSs based on a key function. Then we analyze the relationship between convergence speed and the constant delay. Additionally, we obtain a stability criterion of SPNSs under a particular sequence of switching signals. Finally, we validate the results through a numerical example. © 2025 Elsevier Inc.

关键词： Stability criteria

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Convergence analysis of nonconvex distributed stochastic zeroth-order coordinate method

arXiv

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arXiv 2021年

作者： Zhang, Shengjun Dong, Yunlong Xie, Dong Yao, Lisha Bailey, Colleen P. Fu, Shengli OSCAR Laboratory Department of Electrical Engineering University of North Texas DentonTX76207 United States School of Artificial Intelligence and Automation The MOE Key Laboratory of Image Processing and Intelligent Control The State Key Laboratory of Digital Manufacturing Equipment and Technology Huazhong University of Science and Technology Wuhan430074 China

This paper investigates the stochastic distributed nonconvex optimization problem of minimizing a global cost function formed by the summation of n local cost functions. We solve such a problem by involving zeroth-order (ZO) information exchange. In this paper, we propose a ZO distributed primal–dual coordinate method (ZODIAC) to solve the stochastic optimization problem. Agents approximate their own local stochastic ZO oracle along with coordinates with an adaptive smoothing parameter. We show that the proposed algorithm achieves the convergence rate of O(√p/√T) for general nonconvex cost functions. We demonstrate the efficiency of proposed algorithms through a numerical example in comparison with the existing state-of-the-art centralized and distributed ZO algorithms. Copyright © 2021, The Authors. All rights reserved.

关键词： Stochastic systems

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Convergence Analysis of Nonconvex Distributed Stochastic Zeroth-order Coordinate Method

Convergence Analysis of Nonconvex Distributed Stochastic Zer...

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IEEE Conference on Decision and control

作者： Shengjun Zhang Yunlong Dong Dong Xie Lisha Yao Colleen P. Bailey Shengli Fu OS-CAR Laboratory University of North Texas Denton TX USA School of Artificial Intelligence and Automation the MOE Key Laboratory of Image Processing and Intelligent Control and the State Key Laboratory of Digital Manufacturing Equipment and Technology Huazhong University of Science and Technology Wuhan China University of North Texas Denton TX USA

ISBN: (纸本)9781665436601

This paper investigates the stochastic distributed nonconvex optimization problem of minimizing a global cost function formed by the summation of n local cost functions. We solve such a problem by involving zeroth-order (ZO) information exchange. In this paper, we propose a ZO distributed primal–dual coordinate method (ZODIAC) to solve the stochastic optimization problem. Agents approximate their own local stochastic ZO oracle along with coordinates under an adaptive smoothing parameter. We show that the proposed algorithm achieves the convergence rate of ${\mathcal{O}}(\sqrt p /\sqrt T )$ for general nonconvex cost functions. We demonstrate the efficiency of proposed algorithms through a numerical example in comparison with the existing state-of-the-art centralized and distributed ZO algorithms.

关键词： Smoothing methods Conferences Benchmark testing Cost function Approximation algorithms Information exchange Convergence

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A New control System Based on An Improved PID Neural Network controller for Landslide System control

A New Control System Based on An Improved PID Neural Network...

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第三十九届中国控制会议

作者： Ying Zhang Shu Sun Cheng Lian Xiaoping Wang the School of Artificial Intelligence and Automation the Key Laboratory of Image Processing and Intelligent Control Huazhong University of Science and Technology the School of Artificial Intelligence and Automation the Key Laboratory of Image Processing and Intelligent Control Huazhong University of Science and Technology the School of Automation Wuhan University of Technology IEEE

In this paper, a new control system based on the improved PID neural network controller（PIDNNC） is designed to control the landslide displacement. In the control system,the fuzzy comprehensive judgement model of landslide system is established to judge whether the system needs to be controlled and give the expected displacement. To solve the problem of random initialization in PIDNNC, This paper proposed an improved PIDNNC based on fuzzy PID controller（F-PIDNNC）.The fuzzy PID controller is used to obtain the proportional,integral and differential coefficients kp, ki and kd. Then the obtained parameters are taken as the initial weights of *** effectiveness of the proposed control system is simulated on Baishuihe and Shiliushubao landslides. The results show that the proposed control system based on F-PIDNNC is much accurate and faster than the traditional one-dimensional fuzzy PID controller and PIDNNC.

关键词： PID neural network Fuzzy PID controller Landslide control Stability evaluation

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