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7th International Conference on Big Data Computing and Communications, BigCom 2021

作者： Zhao, Fucheng Han, Xiaosong Zhang, Yikun Niu, Peiyu Cheng, Jun Yi, Wan Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Computer Science and Technology Changchun130012 China

ISBN: (纸本)9781665442527

In TCM (Traditional Chinese Medicine) theory, the cold-and-hot property of food is considered as an important information to guide people's daily diet and keep them healthy. But the classification of this property mostly relies on experience from medical books, which lacks corresponding molecular chemistry basis and makes differentiation very difficult for ordinary people. To solve above question, in this paper, we collected 500 kinds of food and their nutrients, used ANOVA algorithm for feature selection to find out the nutrient feature that have a greater correlation with the cold and hot properties of food, and then used LightGBM algorithm to classify the processed data set. Finally, we constructed a reliable and accurate classification model and found the related nutritional elements are Tyrosine, Arginine, Thiamine, Vitamin B6 and Selenium. © 2021 IEEE.

关键词： Machine learning

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Making Simple Tabular Reduction works on negative table constraints

Making Simple Tabular Reduction works on negative table cons...

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27th AAAI Conference on Artificial Intelligence, AAAI 2013

作者： Li, Hongbo Liang, Yanchun Guo, Jinsong Li, Zhanshan Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Computer Science and Technology Jilin University Changchun 130012 China

ISBN: (纸本)9781577356158

Simple Tabular Reduction algorithms (STR) work well to establish Generalized Arc Consistency (GAC) on positive table constraints. However, the existing STR algorithms are useless for negative table constraints. In this work, we propose a novel STR algorithm and its improvement, which work on negative table constraints. Our preliminary experiments are performed on some random instances and a certain benchmark instances. The results show that the new algorithms outperform GAC-valid and the MDD-based GAC algorithm. Copyright © 2013, Association for the Advancement of Artificial Intelligence (***). All rights reserved.

关键词： Benchmarking

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Identification of transcription factor binding sites using GA and PSO

Identification of transcription factor binding sites using G...

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6th International Conference on Intelligent Systems Design and Applications (ISDA 2006)

作者： Chang, Xiao-Yu Zhou, Chun-Guang Li, Yan-Wen Hu, Ping Key Laboratory of Symbol Computation and J Knowledge Engineering Jilin University Ministry of Education China Department of Computer Science Northeast Normal University Changchun 130012 China

ISBN: (纸本)0769525288

Identification of transcription factor binding sites from the upstream regions of genes is a highly important and unsolved problem. In this paper, we propose a novel framework for using evolutionary algorithm to solve this challenging issue. Under this framework, we use two prevalent evolutionary algorithms: Genetic, Algorithm (GA) and Particle Swarm Optimization (PSO) to find unknown sites in a collection of relatively long intergenic sequences that are suspected of being bound by the same factor. This paper represents binding sites motif to position weight matrix (PWM) and introduces how to code PWM to genome for GA and how to code it to particle for PSO. We apply these two algorithms to 5 different yeast Saccharomyces Cerevisiae transcription factor binding sites and CRP binding sites. The results on Saccharomyces Cerevisiae show that it can find the correct binding sites motifs, and the result on CRP shows that these two algorithms can achieve more accuracy than MEME and Gibbs Sampler.

关键词： Binding sites

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A fast rigid registration algorithm for medical images

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Journal of Fiber Bioengineering and Informatics 2014年第3期7卷 409-418页

作者： Feng, Yuncong Li, Xiongfei Zhang, Xiaoli Ding, Tienan Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Changchun China Department of Computer Science and Technology Changchun China

Image registration is a vital research branch in medical image processing and analysis. In this paper, we proposed a new framework for rigid medical image registration. It can also be regarded as a pre-processing of non-rigid image registration algorithms. The interest of the algorithm lies in its simplicity and high e±ciency. In the registration algorithm, we firstly segmented the reference image and °oat image into two parts: tissue parts and background parts. Then the centers of the two images were located through performing distance transform on the two segmented tissue images. Finally, we detected the longest radius of the two tissue regions, by which we determined the rotating angle. We tested the registration algorithm on dozens of medical images, and the experimental results show us that the algorithm is competent for medical image registration.

关键词： Image registration

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A Fuzzy neural network system based on generalized class cover and particle swarm optimization

A Fuzzy neural network system based on generalized class cov...

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International Conference on Intelligent Computing, ICIC 2005

作者： Huang, Yanxin Wang, Yan Zhou, Wengang Yu, Zhezhou Zhou, Chunguang College of Computer Science and Technology Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of the National Education Ministry Changchun 130012 China

A voting-mechanism-based fuzzy neural network system is proposed in this paper. When constructing the network structure, a generalized class cover problem is presented and its two solving algorithm, an improved greedy algorithm and a binary particle swarm optimization algorithm, are proposed to get the class covers with relatively even radii, which are used to partition fuzzy input space and extract fewer robust fuzzy IF-THEN rules. Meanwhile, a weighted Mamdani inference mechanism is adopted to improve the efficiency of the system output and a real-valued particle swarm optimization-based algorithm is used to refine the system parameters. Experimental results show that the system is feasible and effective. © Springer-Verlag Berlin Heidelberg 2005.

关键词： Neural networks

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PNESR-DDI: An Effective Drug-Drug Interaction Prediction Model Based on Pretraining Method and Enhanced Subgraph Reconstruction

PNESR-DDI: An Effective Drug-Drug Interaction Prediction Mod...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Chen, Ke Han, Xiaosong Li, Xiaoran Liang, Yanchun Xu, Dong Guan, Renchu Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Software Changchun China Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Computer Science and Technology Changchun China Zhuhai College of Science and Technology Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education School of Computer Science Zhuhai China University of Missouri Christopher S. Bond Life Sciences Center Department of Electrical Engineering and Computer Science Columbia United States

ISBN: (纸本)9798350386226

Drug-Drug Interaction (DDI) task plays a crucial role in clinical treatment and drug development. Recently, deep learning methods have been successfully applied for DDI prediction. However, training deep learning models always need large amount of data, while known DDIs are scarce. To address this challenge, a graph neural network-based DDI prediction model named PNESR-DDI is proposed, which compensates for the lack of DDIs by enriching drug representations. First, to obtain initial node representations that incorporate rich semantic information from the biomedical knowledge graph (KG), a link prediction pre-training method on external KG is proposed in the node embedding pre-training module. Then, considering the large scale of the KG, subgraph extraction for the target drug pairs is introduced to reduce noise and decrease computational complexity in the subgraph anchoring module. After that, the subgraph is updated, and node similarities are propagated in the subgraph reconstruction module. Based on the node similarity scores, the subgraph is pruned and reconstructed, which adjusts node representations to be more conducive to DDI prediction. Finally, the drug embeddings, subgraph representations, and drug fingerprint features are concatenated to predict DDIs. PNESRDDI is evaluated on two benchmark DDI datasets: DrugBank and TWOSIDES. Experiment results show that PNESR-DDI achieves better performance than baselines. Ablation results validate the effectiveness of the pre-training method and the adaptive subgraph reconstruction strategy. © 2024 IEEE.

关键词： knowledge graph

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An Algorithm for the Discretization of an Ideal Projector

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Journal of Systems Science & Complexity 2016年第5期29卷 1400-1410页

作者： JIANG Xue ZHANG Shugong LI Zhe Institute of Mathematics Key Laboratory of Symbolic Computation and Knowledge Engineering (Ministry of Education) Jilin University Department of Applied Mathematics School of Science Changchun University of Science and Technology

Ideal interpolation is a generalization of the univariate Hermite interpolation. It is well known that every univariate Hermite interpolant is a pointwise limit of some Lagrange ***, a counterexample provided by Shekhtman Boris shows that, for more than two variables,there exist ideal interpolants that are not the limit of any Lagrange interpolants. So it is natural to consider: Given an ideal interpolant, how to find a sequence of Lagrange interpolants(if any) that converge to it. The authors call this problem the discretization for ideal interpolation. This paper presents an algorithm to solve the discretization problem. If the algorithm returns "True", the authors get a set of pairwise distinct points such that the corresponding Lagrange interpolants converge to the given ideal interpolant.

关键词： Discretization ideal interpolation Lagrange interpolation.

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Crossed-Time Delay Neural Network for Speaker Recognition 1

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27th International Conference on MultiMedia Modeling, MMM 2021

作者： Chen, Liang Liang, Yanchun Shi, Xiaoshu Zhou, You Wu, Chunguo Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University Changchun130012 China Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education School of Computer Zhuhai College of Jilin University Zhuhai519041 China

ISBN: (数字)9783030678326

ISBN: (纸本)9783030678319

Time Delay Neural Network (TDNN) is a well-performing structure for deep neural network-based speaker recognition systems. In this paper we introduce a novel structure, named Crossed-Time Delay Neural Network (CTDNN) to enhance the performance of current TDNN for speaker recognition. Inspired by the multi-filters setting of convolution layers from convolution neural networks, we set multiple time delay units with different context size at the bottom layer and construct a multilayer parallel network. The proposed CTDNN gives significant improvements over original TDNN on both speaker verification and identification tasks. It outperforms in VoxCeleb1 dataset in verification experiment with a 2.6% absolute Equal Error Rate improvement. In few shots condition, CTDNN reaches 90.4% identification accuracy, which doubles the identification accuracy of original TDNN. We also compare the proposed CTDNN with another new variant of TDNN, Factorized-TDNN, which shows that our model has a 36% absolute identification accuracy improvement under few shots condition. Moreover, the proposed CTDNN can handle training with a larger batch more efficiently and hence, utilize calculation resources economically. © 2021, Springer Nature Switzerland AG.

关键词： Convolution

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The batch patching method using dynamic cache of proxy cache for streaming media

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4th International Conference on Grid and Cooperative Computing - GCC 2005

作者： Xu, Zhiwen Guo, Xiaoxin Che, Xiangjiu Wang, Zhengxuan Pang, Yunjie Open Symbol Computation and Knowledge Engineering Laboratory State Education Department Jilin University 130012 Jilin Province China

ISBN: (纸本)3540305106

The proxy cache for streaming media is the important method to economize the resources of the Internet. The cache policies influence the effect for proxy cache. In this paper, based on the client's request rate, cached the video based on segmentation, we proposed that the method for batch, patch and batch patching using dynamic cache. The policies of batch and batch patching using dynamic cache based on segmentation enlarge the width of the batch and patching. It combines dynamic cache based on segmentation with the excellence of patching. Presented that allocation relation between the segmented cache and dynamic cache in the batch and patching, and assured that batch patching using dynamic cache of proxy for streaming media based on segmentation is optimal. © Springer-Verlag Berlin Heidelberg 2005.

关键词： Cache memory

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Solving constrained traveling salesman problems by genetic algorithms

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自然科学进展(英文版) 2004年第7期14卷 631-637页

作者： WU Chunguo LIANG Yanchun LEE Heowpueh LU Chun LIN Wuzhong College of Computer Science and Technology Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering Ministry of Education of China Changchun 130012 China Institute of High Performance Computing Singapore 117528 Singapore Institute of High Performance Computing Singapore 117528 Singapore

Three kinds of constrained traveling salesman problems (TSP) arising from application problems, namely the open route TSP, the end-fixed TSP, and the path-constrained TSP, are proposed. The corresponding approaches based on modified genetic algorithms (GA) for solving these constrained TSPs are presented. Numerical experiments demonstrate that the algorithm for the open route TSP shows its advantages when the open route is required, the algorithm for the end-fixed TSP can deal with route optimization with constraint of fixed ends effectively, and the algorithm for the path-constraint could benefit the traffic problems where some cities cannot be visited from each other.

关键词： constrained traveling salesman problem genetic algorithm Hamiltonian path open route fixed end

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