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IEEE International Conference on Bioinformatics and Biomedicine

作者： Dan Shao Xueteng Cui Lan Huang Kai He Yan Wang Yao Wang Key laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University College of Computer Science and Technology Changchun University Key laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University

ISBN: (纸本)9781728118680

Research on body fluid proteomes has led to the discoveries of context-dependent proteomics profiles and numerous novel disease biomarkers. Common challenges remain with current proteomics technologies about how to effectively handle the large variety of protein modifications in those fluids. To this end, computational efforts have shown early successes in identifying biomarker proteins in specific human diseases. In this article, we first reviewed published computational methods on this topic and then presented a new database system and a novel deep learning-based method for predicting body-fluid proteins in 16 types of human fluids. The results show that our new system outperforms existing methods and provides a highly promising tool to facilitate clinical proteomic discovery.

关键词： machine learning protein prediction body-fluid proteome deep learning Machine Learning Database systems Artificial Intelligence proteomics protein modifications Fluid Human Body maladjustment Learning-based method Biological Markers Body Fluids

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Underwater acoustic intelligent spectrum sensing with multimodal data fusion: An Mul-YOLO approach

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Future Generation Computer Systems 2025年 173卷

作者： Yufang Li Liliang Zhang Kai Wang Lingwei Xu T. Aaron Gulliver Department of Information Science and Technology Qingdao University of Science and Technology Qingdao 266061 China Xiangyang Sub-center of National Engineering Research Center for Water Transport Safety Hubei University of Arts and Science Xiangyang 441053 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun 130012 P.R. China Guangxi Key Laboratory of Hybrid Computation and IC Design Analysis(Guangxi Minzu University) Nanning 530006 China Department of Electrical and Computer Engineering University of Victoria Victoria BC V8W 2Y2 Canada

Realizing the Ocean Internet of Things (OIoT) requires diverse and comprehensive real-time marine data. This creates significant demands on spectrum resources for effective underwater communication. Coexisting users in the OIoT can generate massive amounts of data, which results in competition for underwater acoustic spectrum. To address the problem of poor utilization of this spectrum in complex and dynamic ocean environments, this paper proposes an intelligent spectrum sensing scheme based on multimodal data fusion. First, the system obtains time series data for the underwater acoustic signals and a wavelet transform is used to obtain the corresponding image data. The time series and image data constitute multimodal data that provide a more comprehensive time and space perspective and improve the diversity of features. Then, unsupervised learning with a Denoising Autoencoder is used to extract high-quality features from the time series data. Finally, a parallel dual Backbone YOLO network is constructed to compensate for the inability of traditional YOLO to extract multimodal features. One branch captures key temporal features through a network built with deep separable convolutions, while the other branch captures key spatial features using an improved CSPDarknet. This Mul-YOLO network can extract hierarchical structure information from underwater acoustic signals and integrate the diverse multilevel features of the data to achieve accurate spectrum sensing. Compared with Convolutional Neural Network (CNN), ResNet, Swin-Transformer, ConvNext and YOLOv5 algorithms, the average detection probability of the Mul-YOLO algorithm is increased by about 5.9% to 18.9%, and the average false alarm probability is optimized by about 7% to 12.7% in the range of signal-to-noise ratio from −12 dB to 0 dB. The results given show that the proposed algorithm can detect spectrum holes with high accuracy and effectively avoid interference between users.

关键词： Image fusion

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An embedded vertical‐federated feature selection algorithm based on particle swarm optimisation

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CAAI Transactions on Intelligence Technology 2023年第3期8卷 734-754页

作者： Yong Zhang Ying Hu Xiaozhi Gao Dunwei Gong Yinan Guo Kaizhou Gao Wanqiu Zhang School of Information and Control Engineering China University of Mining and TechnologyXuzhouChina The Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchunChina School of Computing University of Eastern FinlandKuopioFinland The Macao Institute of Systems Engineering Macao University of Science and TechnologyTaipaChina

In real life,a large amount of data describing the same learning task may be stored in different institutions(called participants),and these data cannot be shared among par-ticipants due to privacy *** case that different attributes/features of the same instance are stored in different institutions is called vertically distributed *** pur-pose of vertical‐federated feature selection(FS)is to reduce the feature dimension of vertical distributed data jointly without sharing local original data so that the feature subset obtained has the same or better performance as the original feature *** solve this problem,in the paper,an embedded vertical‐federated FS algorithm based on particle swarm optimisation(PSO‐EVFFS)is proposed by incorporating evolutionary FS into the SecureBoost framework for the first *** optimising both hyper‐parameters of the XGBoost model and feature subsets,PSO‐EVFFS can obtain a feature subset,which makes the XGBoost model more *** the same time,since different participants only share insensitive parameters such as model loss function,PSO‐EVFFS can effec-tively ensure the privacy of participants'***,an ensemble ranking strategy of feature importance based on the XGBoost tree model is developed to effectively remove irrelevant features on each ***,the proposed algorithm is applied to 10 test datasets and compared with three typical vertical‐federated learning frameworks and two variants of the proposed algorithm with different initialisation ***-mental results show that the proposed algorithm can significantly improve the classifi-cation performance of selected feature subsets while fully protecting the data privacy of all participants.

关键词： Evolutionary optimization feature selection privacy protection vertical‐federated learning

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Design of a Daily Brief Business Report Generator based on Web Scraping with KNN Algorithm 2

Design of a Daily Brief Business Report Generator based on W...

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2nd International Conference on Computer Information Science and Application Technology, CISAT 2019

作者： Lin, Gang Liang, Yanchun Fu, Xiaoyang Chen, Guangshun Cai, Shaocan Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering Ministry of Education Department of Computer Science and Technology School of Computer Science Zhuhai Guangdong519041 China Department of Computer Science and Technology School of Computer Science Zhuhai College Jilin University Zhuhai Guangdong519041 China

In order to generate a report for an enterprise where there is neither the API supporting from their existing website systems nor the granted database access rights approval, a daily business report generator system based on web scraping with k nearest neighbor (kNN) classification algorithm is proposed in this paper. It covers the web crawler technology that is to access existing website system and extract business data. The kNN algorithm is applied to identify the verification code on the login page, and the brief daily report generating in a spread-sheet style grid. Compared with some OCR engine for image recognition, the system in Python can automatically generate the brief daily business reports by the kNN algorithm, which is better than some library with default training set on validating the verification code. © Published under licence by IOP Publishing Ltd.

关键词： Report generators

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A new simplification method for terrain model using discrete particle swarm optimization 07

A new simplification method for terrain model using discrete...

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Proceedings of the 15th annual ACM international symposium on Advances in geographic information systems

作者： Zhang, Huijie Sun, Jigui Liu, Jin Lv, Nan College of Computer Science and Technology Jilin University NorthEast Normal University Changchun China College of Computer Science and Technology Jilin University Key Laboratory of Symbol Computation and Knowledge Engineering Changchun China College of Computer Science and Technology Jilin University Changchun China

ISBN: (纸本)9781595939142

In this paper, we put forward a fast simplification method for the terrain model by integrating the discrete particle swarm optimization with the hierarchical structure. In this method, each particle is represented as a hierarchical structure and corresponds to a candidate solution of the simplified terrain model. In order to acquire an optimal simplified model, we proposed a new model error evaluation function based on the terrain features. Thereby the terrain model yielded by this method has high self-adaptability and optimal simplification ratio. Furthermore, the velocity of the particle is redefined as the probability of the model being simplified superiorly. Therefore, the particles can converge to the optimal simplified model rapidly. The experimental results performed on benchmark terrain data show that the efficiency and the precision of our algorithm are improved greatly and the detailed features in the simplified model are preserved, compared with the others common simplification method. © 2007 ACM.

关键词： Landforms

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Optimization strategy of parallel query processing based on multi-core architecture

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Journal of Convergence Information Technology 2010年第8期5卷 24-24页

作者： Chen, Yongheng Zuo, Wanli He, Fengling Chen, Kerui College of Computer Science and Technology Jilin University Changchun 130012 China Key Laboratory of Symbol Computation and Knowledge Engineering of the Ministry of Education Changchun China

Chip Multi-Processor (CMP) could support more than two threads to execute simultaneously, and some executing units are owned by each core. Because threads share various resources of CMP, such as L2-Cache, among many threads, CMP system is inherently different from multiprocessors system and, CMP is also different from simultaneously multithreading (SMT). In this paper a novel and complete approach on how to parallelism for relational database multithreaded query execution that strives for maximum resource utilization for both CPU and disk activities. The focus of this approach is on how to use the multithreaded parallel technique to optimize and process queries based on multi-core architecture. A set of algorithms for implementing and optimizing the best query plan, such as the algorithms for scheduling and parallel executing the query plan, the algorithms for allocating thread to sub-query and memory to the buffers between operations in pipelining execution, are proposed in this method. Additionally this paper analysis and optimize the implementation of parallel buffers and multithread. In the experiments, this paper evaluates performance of the parallel buffers and tests the coordination of the multithread.

关键词： Scheduling algorithms

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A Morphology Focused Cell Detection Model for Histopathology Images

A Morphology Focused Cell Detection Model for Histopathology...

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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Wang, Zhe Wei, Fangyue Guo, Shuyu Che, Xiaoting Bai, Tian Jilin University College of Computer Science and Technology Changchun China Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Changchun China

ISBN: (纸本)9798350337488

The accurate automatic recognition of cell locations is of great significance for downstream tasks in pathology. Due to the various size and distribution of different cell types, previous cell detection methods applied fixed circles as labels to localize cell position by default, which makes less precise and more difficult to adapt various cell morphology. In this paper, we integrate adaptive areas of interests based on morphology to address the limitation in detecting cells with irregular shapes in pathological images. Moreover, a EGSI module is proposed to extract global distribution of cells in slices, which enables model to acquire more rich semantic information. We exhibit favorable F1 score of our method on four public datasets. Experimental results demonstrate that the proposed method could detect cells more accurately in those images with different cell morphologies and dense cell distribution. © 2023 IEEE.

关键词： cell detection cellular morphology digital pathology medical image analysis

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A kind of improving HMM model and using in the visual speech recognition

A kind of improving HMM model and using in the visual speech...

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2011 International Conference on Computer Science and Service System, CSSS 2011

作者： Zhang, Zeliang Li, Xiongfei Yang, Chengjia Key Laboratory of Symbol Computation and Knowledge Engineering Ministry of Education Jilin University Changchun China Beihua University Jilin China

ISBN: (纸本)9781424497638

Visual speech-lip reading, making the computer understands what do speakers want to express through observing the lip direction of them. The most simply method of lip reading in early stage is to compare between characters from the frozen pictures and templates being stored. It neglects the character is changing with time. This method is very simply, but it only can classify the simple elements not the words, so it couldn't render great serves to speech recognition. Afterwards the adoption of behavioral characteristics is becoming more widespread. Because of the superior of Hidden Markov model (HMM), it can be applied in speech recognition widely. In recent years, it is also used in the research of lip-reading recognition. The classical HMM model makes two hypotheses: hidden expropriation hypothesis: the state at t+1 is only conditioned by the state at t, not the state before;the expropriation hypothesis from hidden state to visible state: the visible state at t only conditioned by the hidden state at t, not the state before. Such kind of hypothesis is not very reasonable in some practical application (such as lip-reading). In some kind condition, the state at t is not only conditioned by t-1, but also t-2. Therefore this thesis revises the assumed condition classical HMM to derive a new HMM model and algorithm, and applying it into lip-reading recognition to increase the discrimination. © 2011 IEEE.

关键词： Hidden Markov models

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A layered graph representation for complex regions

A layered graph representation for complex regions

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12th International Conference on Principles of knowledge Representation and Reasoning, KR 2010

作者： Li, Sanjiang Centre for Quantum Computation and Intelligent Systems Faculty of Engineering and Information Technology University of Technology Broadway Sydney NSW 2007 Australia Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University Changchun 130012 China

ISBN: (纸本)9781577354512

This paper proposes a layered graph model for representing the internal structure of complex plane regions, where each node represents the closure of a connected component of the interior or exterior of a complex region. The model provides a complete representation in the sense that the (global) nineintersections between the interiors, the boundaries, and the exteriors of two complex regions can be determined by the (local) RCC8 relations between associated simple regions. Copyright © 2010, Association for the Advancement of Artificial Intelligence.

关键词： Graph theory

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A hybrid discrete PSO-SA algorithm to find optimal elimination orderings for Bayesian networks

A hybrid discrete PSO-SA algorithm to find optimal eliminati...

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2010 2nd International Conference on Industrial and Information Systems, IIS 2010

作者： Dong, Xuchu Ouyang, Dantong Cai, Dianbo Zhang, Yonggang Ye, Yuxin Department of Computer Science and Technology Jilin University Changchun Jilin China Key Laboratory of Symbol Computation and Knowledge Engineering of the Ministry of Education Changchun Jilin China Network Monitor Maintenance Centre Jilin Branch China Telecom Corporation Limited Changchun Jilin China

ISBN: (纸本)9781424482177

In this paper, a hybrid algorithm named DPSO-SA is proposed to find near-to-optimal elimination orderings in Bayesian networks. DPSO-SA is a discrete particle swarm optimization method enhanced by simulated annealing. computational tests show that this hybrid method is very effective and robust for the elimination ordering problem. © 2010 IEEE.

关键词： Simulated annealing

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