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A Method of Gene-Function Annotation Based on Variable Precision Rough Sets

Journal of Bionic engineering 2007年第3期4卷 177-184页

作者： Zhi-li Pei Xiao-hu Shi Meng Niu Xu-ning Tang Li-sha Liu Ying Kong Yan-chun Liang College of Computer Science and Technology Jilin University Key Laboratory of Symbol Computation and Knowledge Engineering of the Ministry of Education Changchun 130012 P. R. China College of Mathematics and Computer Science Inner Mongolia University for NationalitiesTongliao 028043 P. R. China College of Software Jilin University Changchun 130012 P. R. China Department of Biochemistry and Molecular Biology Institution of Glycobiology Dalian Medical University Dalian 116027 P. R. China

It is very important in the field of bioinformatics to apply computer to perform the function annotation for new sequenced bio-sequences. Based on GO database and BLAST program, a novel method for the function annotation of new biological sequences is presented by using the variable-precision rough set theory. The proposed method is applied to the real data in GO database to examine its effectiveness. Numerical results show that the proposed method has better precision, recall-rate and harmonic mean value compared with existing methods.

关键词： gene function annotation variable precision rough set GO BLAST

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Static knowledge representation of multi-agent system's specification by description logics

Static knowledge representation of multi-agent system's spec...

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2006 International Workshop on Description Logics, DL 2006

作者： Che, Haiyan Sun, Jigui Yu, Haibo College of Computer Science and Technology Jilin University Changchun 130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University Changchun 130012 China

Modularity and rigor are two key elements for multi-agent technology. Hong Zhu's multi-agent system (MAS) development method provides proper language facilities supporting modularity. To enhance this method with rigor advocates a DL method to map the specification of MAS into a DL TBox. Thus, we can use the existing DL reasoners and systems to verify and validate some system's properties.

关键词： Multi agent systems

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A novel hybrid butterfly optimization algorithm for feature selection with sine cosine velocity in the high-dimensional classification data

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Journal of Intelligent and Fuzzy Systems 2024年第5-6期47卷 369-391页

作者： Zhang, Li Chen, Xiaobo Key Laboratory of Data Science and Intelligence Education Hainan Normal University Ministry of Education Haikou Hainan China School of Computer Engineering Jiangsu University of Technology Changzhou Jiangsu China Changzhou City Center Branch People's Bank of China Changzhou Jiangsu China Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University Changchun China

Aiming at the shortcomings of the traditional butterfly optimization algorithm in solving the high-dimensional classification feature selection problem, which has low convergence and is prone to fall into local optimal solutions, a new hybrid butterfly optimization algorithm is proposed, i.e., HBOA-SCV (A novel hybrid butterfly optimization algorithm with sine cosine velocity). The algorithm is applied to solve a high-dimensional classification feature selection problem. Firstly, the algorithm's global exploration and local exploitation ability can be dynamically balanced by introducing inertia weight coefficients w based on multiple learning strategies. Secondly, using the updated speed position formula of the sine-cosine acceleration strategy, individual butterflies' autonomous search ability and convergence speed can be further improved. Finally, according to the fitness value of each butterfly individual, the moving step length and direction of the butterfly individual are automatically adjusted better to fit the actual search process of the butterfly individual, increase the search ability in the global range, and avoid the algorithm from falling into the local optimum. To verify the algorithm's effectiveness, 18 high-dimensional classification numbers are selected to carry out simulation and comparison experiments between HBOA-SCV and traditional BOA algorithm, five improved BOA algorithms and other comparative algorithms for high-dimensional classification data successively. The experimental results show that the average fitness value and classification accuracy of the HBOA-SCV algorithm are better than the comparison algorithm, thus verifying the superiority of the HBOA-SCV algorithm. © 2024 - IOS Press. All rights reserved.

关键词： Optimization algorithms

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Multi-Target Track Initiation in Heavy Clutter

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Computers, Materials & Continua 2022年第9期72卷 4489-4507页

作者： Li Xu Ruzhen Lou Chuanbin Zhang Bo Lang Weiyue Ding College of Computer Science and Technology Harbin Engineering UniversityHarbin150001China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchun130012China Norinco Group Air Ammunition Research Institute Co.Ltd. Harbin150036China Harvard Medical School Boston02115USA

In the heavy clutter environment, the information capacity is large,the relationships among information are complicated, and track initiationoften has a high false alarm rate or missing alarm rate. Obviously, it is adifficult task to get a high-quality track initiation in the limited measurementcycles. This paper studies the multi-target track initiation in heavy *** first, a relaxed logic-based clutter filter algorithm is presented. In thealgorithm, the raw measurement is filtered by using the relaxed logic *** not only design a kind of incremental and adaptive filtering gate, but alsoadd the angle extrapolation based on polynomial extrapolation. The algorithm eliminates most of the clutter and obtains the environment with highdetection rate and less clutter. Then, we propose a fuzzy sequential Houghtransform-based track initiation algorithm. The algorithm establishes a newmeshing rule according to system noise to balance the relationship between thegrid granularity and the track initiation quality. And a flexible superpositionmatrix based on fuzzy clustering is constructed, which avoids the transformation error caused by 0–1 voting method in traditional Hough *** addition, the algorithm allows the superposition matrixes of nonadjacentcycles to be associated to overcome the shortcoming that the track can’t beinitiated in time when the measurements appear in an intermittent way. Anda slope verification method is introduced to detect formation-intensive serialtracks. Last, the sliding window method is employed to feedback the trackinitiation results timely and confirm the track. Simulation results verify thatthe proposed algorithms can initiate the tracks accurately in heavy clutter.

关键词： Track initiation heavy clutter multi-target Hough transform

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An Improved Pigeon-Inspired Optimization for Multi-focus Noisy Image Fusion

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Journal of Bionic engineering 2021年第6期18卷 1452-1462页

作者： Yingda Lyu Yunqi Zhang Haipeng Chen Public Computer Education and Research Center Jilin UniversityChangchun130012China College of Software Jilin UniversityChangchun 130012China College of Computer Science and Technology Jilin UniversityChangchun 130012China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchun 130012China

Image fusion technology is the basis of computer vision task,but information is easily affected by noise during *** this paper,an Improved Pigeon-Inspired Optimization(IPIO)is proposed,and used for multi-focus noisy image fusion by combining with the boundary handling of the convolutional sparse *** two-scale image decomposition,the input image is decomposed into base layer and detail *** the base layer,IPIO algorithm is used to obtain the optimized weights for fusion,whose value range is gained by fusing the edge ***,the global information entropy is used as the fitness index of the IPIO,which has high efficiency especially for discrete optimization *** the detail layer,the fusion of its coefficients is completed by performing boundary processing when solving the convolution sparse representation in the frequency *** sum of the above base and detail layers is as the final fused *** results show that the proposed algorithm has a better fusion effect compared with the recent algorithms.

关键词： Improved pigeon-inspired optimization Convolutional sparse representation Noisy image fusion Bionic algorithm

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Visual saliency and extended hidden markov model based approach for image splicing detection

Visual saliency and extended hidden markov model based appro...

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2013 International Conference on Mechanical and Electronics engineering, ICMEE 2013

作者： Li, Xiang Shen, Xuan Jing Lv, Ying Da Chen, Hai Peng College of Computer Science and Technology Jilin University Changchun Jilin China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun Jilin China

ISBN: (纸本)9783037858103

In order to improve the detection accuracy of spliced images, a new blind detection based on visual saliency was proposed in this paper. Firstly, create the edge conspicuous map by an improved OSF-based method, and extract fixations by visual attention model. Then locate those fixations on conspicuous edges by conspicuous edge positioning method. Accordingly, key feature fragments can be captured. Secondly, extract Extended Hidden Markov Model features, and reduce their dimension by SVM-RFE. Finally, support vector machine was exploited to classify the authentic and spliced images. The experimental results showed that, when testing on the Columbia image splicing detection dataset, the detection accuracy of the proposed method was 96.68%. © (2013) Trans Tech Publications, Switzerland.

关键词： Hidden Markov models

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Object localization based on global structure constraint model and optimal algorithm

Object localization based on global structure constraint mod...

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3rd International Conference on Innovative Computing Information and Control, ICICIC'08

作者： Liu, Miao Guo, Dongwei Ma, Jie Liu, Xiaohua Li, Dan Zhou, Chunguang College of Computer Science and Technology Jilin University 130012 Changchun China Key Laboratory of Symbolic Computation and Knowledge Engineering Jilin University Ministry of Education 130012 Changchun China

ISBN: (纸本)9780769531618

We present a novel object localization approach based on the Global Structure Constraint model (GSC) and Optimal Algorithm. In GSC, Objects are described as constellations of points satisfied with their specific global structure constraints. The spatial relations among all the patches having stable color information and their representative color information around patches are encoded. Then, the searching algorithm, i.e. genetic algorithm, is used to locate target objects in images by finding out the exactly matched position. In the experiment, we tested the approach on a collection of human face images and the results demonstrated the approach is simple, effective and efficient. © 2008 IEEE.

关键词： Genetic algorithms

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An adaptive and fast valley emphasis multilevel otsu thresholding algorithm

An adaptive and fast valley emphasis multilevel otsu thresho...

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2013 International Conference on Image Processing, Computer Vision, and Pattern Recognition, IPCV 2013, at WORLDCOMP 2013

作者： Long, Jianwu Shen, Xuanjing Chen, Haipeng Zhang, He College of Computer Science and Technology Jilin University Changchun Jilin China Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University Changchun Jilin China

ISBN: (纸本)1601322534

The multilevel thresholding problem is a challenge task due to the fact that the computation is usually very time-consuming for obtaining the optimal multilevel thresholds. Though the state-of-the-art multilevel thresholding algorithms applied various meta-heuristic techniques or acceleration strategies, they still directly searched the optimal thresholds in the whole histogram only for the fixed thresholds number given by the user. Considering that the optimal thresholds usually locate at the valleys of the histogram, we propose an adaptive and fast valley emphasis multilevel Otsu thresholding algorithm (AFVEO). We constrain the searching space in locations of all valleys of the histogram, and it can greatly reduce the iterations required for computing the between-class variance due to the fact that the number of valleys is much fewer than the size of the histogram. And most important we can obtain the optimal multilevel thresholds for different thresholds number without fixed one given by the user. The experimental results indicate that the proposed method is more efficient than traditional Otsu method, recursive Otsu method, valley emphasis Otsu method and neighborhood valley emphasis Otsu method. © 2013 CSREA Press. All rights reserved.

关键词： Image segmentation

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Rule-based modeling and simulation of gene expression process 10

Rule-based modeling and simulation of gene expression proces...

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2020 10th International Workshop on Computer Science and engineering, WCSE 2020

作者： Zhao, Tianqi Luo, Cuntong Yang, Yi Feng, Liwei Lu, Xinhua College of Computer Science and Technology Jilin University Changchun130012 China Key Laboratory of Symbolic Computation Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China

ISBN: (纸本)9789811447877

A process of gene expression which is designed and modeled by machine language, and by using to process complex data. At the molecular biological level, classifying and sorting the related substances involved in the transcription and translation processes, and using a rule-based modeling method to simulate the gene expression process. By entering the initial data of the designed gene into the program, the computer can give the result of the gene expression process. The experimental data shows that this gene expression result is correct. In this paper, we summarize the rules of the transcription and translation of the gene expression process and the basic part of the central dogma, and then formalize it, and then establish a model to realize the biological information processing in uncomplicated situations, and then realize the gene expression process on the computer. © WCSE 2020.

关键词： Transcription

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Translating query for deep web using ontology

Translating query for deep web using ontology

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International Conference on Computer Science and Software engineering, CSSE 2008

作者： Hao, Hang Wanli, Zuo Fei, Ren Junhua, Wang College of Computer Science and Technology Jilin University Department of Information Science and Technology Changchun Taxation College Changchun 130117 China Key Laboratory of Symbol Computation and Knowledge Engineering Ministry of Education Changchun 130012 China College of Computer Science and Technology Jilin University Changchun 130012 China

ISBN: (纸本)9780769533360

The E-commerce information on the Surface Web is supported by the Deep Web, which can not be accessed directly by the search engines or the web crawlers. The only way to access the backend database is through query interface. Extracting valid attributes from the query forms and automatic translating the source query into a target query is a solvable way for addressing the current limitations in accessing Deep Web data sources. To generate a valid query, we have to reconcile the key attributes and their semantic relation. We present our framework to solve the problem. To enrich the set of attributes contained in the semantic form, we use the WordNet as kinds of ontology technique and we try to find the semantic relation of the attributes in the same query from and different forms. Extensive experiments over real-word domains show the utility of our query translation framework. © 2008 IEEE.

关键词： Ontology

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