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A hybrid feature selection algorithm for microarray data

Concurrency and computation: Practice and Experience 2018年

作者： Zheng, Yuefeng Li, Ying Wang, Gang Chen, Yupeng Xu, Qian Fan, Jiahao Cui, Xueting College of Computer Science and Technology Jilin University Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun China BODA College of Jilin Normal University SiPing China

For each microarray data set, only a small number of genes are beneficial. Due to the high-dimensional problem, gene selection research work remains a challenge. In order to solve the high-dimensional problem, we propose a dimensionality reduction algorithm named K Value Maximum Relevance Minimum Redundancy Improved Grey Wolf Optimizer (KMR2IGWO). First, in the processing of KMR2, the K genes are selected. Second, the K genes are initialized by two ways according to random selection feature and different proportions of selection feature. Finally, the IGWO algorithm selects the optimal classification accuracy and the optimal combination of gene by adjusting the parameters of fitness function. The algorithm has a significant dimensionality reduction effect and is suitable for high-dimensional data sets. Experimental results show that the proposing KMR2IGWO strategy significantly reduces the dimension of microarray data and removes the redundant features. On the 14 microarray datasets, compared with the four algorithms mRMR+PSO, mRMR + GA, mRMR + BA, mRMR + CS, the proposed algorithm has higher performance in classification accuracy and feature subset length. © 2018 John Wiley & Sons, Ltd.

关键词： Support vector machines

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Corrigendum to: Multi-Swarm Cuckoo Search Algorithm withQ-Learning Model

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The Computer Journal 2022年第7期65卷 1938-1938页

作者： Li, Juan Xiao, Dan-dan Zhang, Ting Liu, Chun Li, Yuan-xiang Wang, Gai-ge School of Artificial Intelligence Wuhan Technology and Business University Wuhan 430065 China School of Artificial Intelligence Wuchang University of Technology Wuhan 430223 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University No. 2699 Qianjin Street Gaoxin District Changchun Jilin China 130012 School of Computer Wuhan University No. 299 Bayi Street Wuchang District Wuhan Hubei China 430072 Department of Computer Science and Technology Ocean University of China No. 238 Songling Street Laoshan District Qingdao Shandong China 266100 Institute of Algorithm and Big Data Analysis Northeast Normal University No. 5268 Renmin Street Nanguan District Changchun Jilin China 130117

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A Surrogate Model Based Genetic Algorithm for Complex Problem Solving

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Journal of Physics: Conference Series 2020年第1期1646卷

作者： Ying Pei Hao Gao Xiaosong Han The College of Information Engineering Changchun University of Finance and Economics Changchun 130122 China Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Computer Science and Technology College of Software Jilin University Changchun 130012 China

It is well known that when the fitness function is relatively complex, the optimization time cost of the genetic algorithm will be extremely huge. To address this issue, the surrogate model was employed to predict the fitness value of the optimization problem, to reduce the number of actual calculated fitness values. In this paper, BP neural network, the least square method and support vector machine were fused in the genetic algorithm to evaluate partial individuals' fitness. Sufficient benchmark numerical experiments were conducted, and the results proved that the strategy could reduce the calculating counts of fitness function on similar accuracy basis compared with simple genetic algorithm.

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Friend Recommendation System Based on Geolocation and Contents of Users

Friend Recommendation System Based on Geolocation and Conten...

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2018 International Conference on Computer Modeling, Simulation and Algorithm（CMSA2018）

作者： Mingyue Duan Jing Huang Jiaxuan Zhang Yunjie Tian Dongwei Li Bin Wang College of Computer Science and Technology Jilin university Key Laboratory of Symbol Computation and Knowledge Engineering (Jilin university) Ministry of Education

ISBN: (纸本)9781510864696

In recent years, with the rapid development of wireless mobile network and smart phone operating systems, various social software based on wireless Internet has emerged one after another. Current popular social software such as QQ and We Chat have become important tools for people to meet new friends. At present, existing social software can recommend other users in the vicinity according to the geographical location of the user. However, this method does not consider the user's interests, hobbies, etc. So that the effectiveness of such a friend recommmendation system is often unsatisfactory. In order to solve the above problems, a personalized friend recommendation system based on geolocation information and user content is designed and developed. In this system, not only the geolocation information of the user is considered, but also the features of the user's published statuses are extracted, aiming to recommend more similar other users to the user. After testing, the effectiveness of the proposed method is verified.

关键词： instant message friend recommendation geolocation information context information

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A multi-level neural network for implicit causality detection in Web texts

arXiv

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arXiv 2019年

作者： Liang, Shining Zuo, Wanli Shi, Zhenkun Wang, Sen Wang, Junhu Zuo, Xianglin Key Laboratory of Symbol Computation Knowledge Engineering of Ministry of Education Changchun China College of Computer Science and Technology Jilin University Jilin China Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences School of Information Technology and Electrical Engineering The University of Queensland Brisbane Australia School of Information and Communication Technology Griffith University QLD Australia

Mining causality from text is a complex and crucial natural language understanding task corresponding to the human cognition. Existing studies at its solution can be grouped into two primary categories: feature engineering based and neural model based methods. In this paper, we find that the former has incomplete coverage and inherent errors but provide prior knowledge;while the latter leverages context information but causal inference of which is insufficiency. To handle the limitations, we propose a novel causality detection model named MCDN to explicitly model causal reasoning process, and furthermore, to exploit the advantages of both methods. Specifically, we adopt multi-head self-attention to acquire semantic feature at word level and develop the SCRN to infer causality at segment level. To the best of our knowledge, with regards to the causality tasks, this is the first time that the Relation Network is applied. The experimental results show that: i) the proposed approach performs prominent performance on causality detection;ii) further analysis manifests the effectiveness and robustness of MCDN. © 2019, CC BY-NC-SA.

关键词： Semantics

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A Two-Dimensional Improvement for Farr-Gao Algorithm

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Journal of Systems Science & Complexity 2016年第5期29卷 1382-1399页

作者： DONG Tian School of Mathematics Key Laboratory of Symbolic Computation and Knowledge Engineering (Ministry of Education) Jilin University

Farr-Gao algorithm is a state-of-the-art algorithm for reduced Gr?bner bases of vanishing ideals of finite points, which has been implemented in Maple as a build-in command. This paper presents a two-dimensional improvement for it that employs a preprocessing strategy for computing reduced Gr?bner bases associated with tower subsets of given point sets. Experimental results show that the preprocessed Farr-Gao algorithm is more efficient than the classical one.

关键词： Grobner basis GrSbner escalier Newton interpolation basis tower set vanishing ideal.

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A new SAT Encoding Scheme for Exactly-one Constraints

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Journal of Physics: Conference Series 2019年第1期1288卷

作者： Jiatong Cai Yating Su Xixi Yang Jionghao Min Yong Lai College of Software Jilin University Changchun P.R. China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun P.R. China

Exactly-one constraints have comprehensive applications for the fields of artificial intelligence and operations research. For many encoded SAT problems generated by the existing encoding schemes of exactly-one constraints, the state-of-the-art knowledge compilers cannot complete compilation. In this paper, we propose a new encoding scheme of exactly-one constraints. We introduce two-dimensional auxiliary variables (represented as a matrix) to denote the constraint that exactly one of some variables can be assigned as true. The clauses generated by our scheme is significantly less than those generated by three other existing encoding schemes. The experimental results on the exact cover problems show that the encoded CNF formulas generated by our scheme requires less compilation time, compared with the other three coding schemes.

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The Equivalent Representation of the Breadth-One D-Invariant Polynomial Subspace and Its Discretization

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Journal of Systems Science & Complexity 2016年第5期29卷 1436-1445页

作者： JIANG Xue ZHANG Shugong Institute of Mathematics Key Laboratory of Symbolic Computation and Knowledge Engineering (Ministry of Education) Jilin University

This paper demonstrates the equivalence of two classes of D-invariant polynomial subspaces, i.e., these two classes of subspaces are different representations of the breadth-one D-invariant subspace. Moreover, the authors solve the discrete approximation problem in ideal interpolation for the breadth-one D-invariant subspace. Namely, the authors find the points, such that the limiting space of the evaluation functionals at these points is the functional space induced by the given D-invariant subspace, as the evaluation points all coalesce at one point.

关键词： Breadth-one D-invariant polynomial subspace discrete approximation problem idealinterpolation.

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Low cost edge sensing for high quality demosaicking

arXiv

引用

arXiv 2018年

作者： Niu, Yan State Key Laboratory of Symbol Computation and Knowledge Engineering Ministry of Education College of Computer Science and Technology Jilin University Changchun130012 China

Digital cameras that use Color Filter Arrays (CFA) entail a demosaicking procedure to form full RGB images. As today's camera users generally require images to be viewed instantly, demosaicking algorithms for real applications must be fast. Moreover, the associated cost should be lower than the cost saved by using CFA. For this purpose, we revisit the classical Hamilton-Adams (HA) algorithm, which outperforms many sophisticated techniques in both speed and accuracy. Based on a close look at HA's strength and weakness, we design a very low cost edge sensing scheme. Briefly, it guides demosaicking by a logistic functional of the difference between directional variations. We extensively compare our algorithm with 28 demosaicking algorithms by running their open source codes on benchmark datasets. Compared to methods of similar computational cost, our method achieves substantially higher accuracy;Whereas compared to methods of similar accuracy, our method has significantly lower cost. Moreover, on test images of currently popular resolution, the quality of our algorithm is comparable to top performers, whereas its speed is tens of times faster. Copyright © 2018, The Authors. All rights reserved.

关键词： Costs

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Multi-Classification of Cancer Samples Based on Co-Expression Analyses

Multi-Classification of Cancer Samples Based on Co-Expressio...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Hongyang Jiang Qiang Huang Liang Chen Zhi Li Ying Xu Huiyan Sun Yi Chang Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University Changchun China College of Engineering Key Laboratory of Intelligent ManufacturingTechnology of Ministry of Education Shantou University Shantou China Key Laboratory of Anticancer Drugs and Biotherapy of Liaoning Province The First Hospital of China Medical University Shenyang China The China-Japan Union Hospital Cancer Systems Biology Center Jilin University Changchun China The China-Japan Union Hospital School of Artificial Intelligence Cancer Systems Biology Center Jilin University Changchun China School of Artificial Intelligence Jilin University Changchun China

Cancer staging, grading and subtyping all represent important problems for precision diagnosis, treatment and mechanistic studies of cancer. The majority of the existing computational methods solve this problem via multi-classification of differential gene-expressions of cancer samples of specific classes (Stages, Grades and subtypes) vs. controls. However, the performance of such classification techniques is generally not satisfactory since the discerning power of differential expression patterns in such classifications is limited. We present here a multi-classification technique, based on co-expression patterns specific to individual subclasses in provided training data as co-expression patterns tend to be more conserved than differential expressions within each subclass. A challenge in implementing this strategy lies in how to effectively derive co-expression patterns in individual samples, which is solved through comparing co-expression patterns within a subclass and those in the subclass plus a new sample. Compared with the state-of-the-art gene expression-based classification methods, our method outperforms them in cancer staging, grading and subtyping of cancer samples from TCGA in almost all the measures used. In addition, the co-expressed genes computationally selected for classifications are biologically meaningful, which will prove important for diagnostic biomarker design, treatment plan selection and possibly mechanistic studies of cancer.

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