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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Ying Zhang Shuai Guo Dantong Shi Jinhai Xiang College of Informatics Huazhong Agricultural University Wuhan China Agricultural Bioinformatics Key Laboratory of Hubei Province Key Laboratory of Smart Farming for Agricultural Animals Ministry of Agriculture Hubei Engineering Technology Research Center of Agricultural Big Data Engineering Research Center of Intelligent Technology for Agriculture Ministry of Education Huazhong Agricultural University Wuhan China

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

The core of the image registration task is to accurately extract and compare the spatial feature information between moving and fixed images. The model must not only be able to capture features inside an image, but also be able to distinguish similarities and differences between moving image and fixed image. Although UNet and its variant networks are widely used in the field of registration, they still present challenges in terms of fine-grained and multi-level feature extraction. In order to address these issues, we propose a dual-decoder UNet network based on contrastive learning. For enhancing the discriminant ability of the network at the feature level, the proposed model applies contrastive learning to the encoder stage of UNet, which strengthens the differential learning in the process of feature extraction. In addition, a multi-level feature fusion method is introduced in the encoder to consider the feature differences at each level more comprehensively. Experimental results show that the proposed method has achieved a significant improvement in the registration accuracy. On the LPBA40 dataset, compared with Affine, VoxelMorph and CLMorph, the Dice scores were increased by 15.2%, 2.5% and 1.9%, respectively, which verified the effectiveness of the proposed method. Our code implementation is publicly available at https://***/LaneAzur/DD-CLUNet.

关键词： Learning systems Image registration Accuracy Deformation Contrastive learning Feature extraction Transformers Decoding data mining Biomedical imaging

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LEGNN: A Label Ensemble Perspective for Training a Label-Noise-Resistant GNN with Reduced Complexity

arXiv

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arXiv 2024年

作者： Zhao, Rui Shi, Bin Liang, Zhiming Ruan, Jianfei Dong, Bo Lin, Lu School of Computer Science and Technology Xi'an Jiaotong University China Ministry of Education Key Laboratory of Intelligent Networks and Network Security China Shaanxi Province Key Laboratory of Big Data Knowledge Engineering China School of Distance Education Xi'an Jiaotong University China College of Information Sciences and Technology Penn State University United States

Graph Neural Networks (GNNs) have been widely employed for semi-supervised node classification tasks on graphs. However, the performance of GNNs is significantly affected by label noise, that is, a small amount of incorrectly labeled nodes can substantially misguide model training. Mainstream solutions define node classification with label noise (NCLN) as a reliable labeling task, often introducing node similarity with quadratic computational complexity to more accurately assess label reliability. To this end, in this paper, we introduce the Label Ensemble Graph Neural Network (LEGNN), a lower complexity method for robust GNNs training against label noise. LEGNN reframes NCLN as a label ensemble task, gathering informative multiple labels instead of constructing a single reliable label, avoiding high-complexity computations for reliability assessment. Specifically, LEGNN conducts a two-step process: bootstrapping neighboring contexts and robust learning with gathered multiple labels. In the former step, we apply random neighbor masks for each node and gather the predicted labels as a high-probability label set. This mitigates the impact of inaccurately labeled neighbors and diversifies the label set. In the latter step, we utilize a partial label learning based strategy to aggregate the high-probability label information for model training. Additionally, we symmetrically gather a low-probability label set to counteract potential noise from the bootstrapped high-probability label set. Extensive experiments on six datasets demonstrate that LEGNN achieves outstanding performance while ensuring efficiency. Moreover, it exhibits good scalability on dataset with over one hundred thousand nodes and one million edges. Copyright © 2024, The Authors. All rights reserved.

关键词： Graph neural networks

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Detecting Adversarial data by Probing Multiple Perturbations Using Expected Perturbation Score

arXiv

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arXiv 2023年

作者： Zhang, Shuhai Liu, Feng Yang, Jiahao Yang, Yifan Li, Changsheng Han, Bo Tan, Mingkui School of Software Engineering South China University of Technology China Pazhou Laboratory China The University of Melbourne Australia Beijing Institute of Technology Beijing China Department of Computer Science Hong Kong Baptist University Hong Kong Key Laboratory of Big Data and Intelligent Robot Ministry of Education China

Adversarial detection aims to determine whether a given sample is an adversarial one based on the discrepancy between natural and adversarial distributions. Unfortunately, estimating or comparing two data distributions is extremely difficult, especially in high-dimension spaces. Recently, the gradient of log probability density (a.k.a., score) w.r.t. the sample is used as an alternative statistic to compute. However, we find that the score is sensitive in identifying adversarial samples due to insufficient information with one sample only. In this paper, we propose a new statistic called expected perturbation score (EPS), which is essentially the expected score of a sample after various perturbations. Specifically, to obtain adequate information regarding one sample, we perturb it by adding various noises to capture its multi-view observations. We theoretically prove that EPS is a proper statistic to compute the discrepancy between two samples under mild conditions. In practice, we can use a pre-trained diffusion model to estimate EPS for each sample. Last, we propose an EPS-based adversarial detection (EPSAD) method, in which we develop EPS-based maximum mean discrepancy (MMD) as a metric to measure the discrepancy between the test sample and natural samples. We also prove that the EPS-based MMD between natural and adversarial samples is larger than that among natural samples. Extensive experiments show the superior adversarial detection performance of our EPS-AD. Copyright © 2023, The Authors. All rights reserved.

关键词： Machine learning

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High-Level Synthesis for Microfluidic Biochips Considering Actual Volume Management and Channel Storage

High-Level Synthesis for Microfluidic Biochips Considering A...

引用

IEEE International Symposium on Quality Electronic Design

作者： Zhengyang Chen Yuhan Zhu Zhen Chen Zhisheng Chen Genggeng Liu College of Computer and Data Science Fuzhou University Fuzhou China Engineering Research Center of Big Data Intelligence Ministry of Education Fuzhou China Fujian Key Laboratory of Network Computing and Intelligent Information Processing (Fuzhou University) Fuzhou China School of Informatics Xiamen University Xiamen China

ISBN: (数字)9798350309270

ISBN: (纸本)9798350309287

In recent years, microfluidic biochips have been widely applied in various fields of human society. The emergence of distributed channel-storage architecture enables fluid to be directly cached within the flow channels without being transported to the dedicated storage. However, the volume of the flow channels is limited, it is important to carefully consider the fluid volume to be cached to ensure it can be accommodated within the appropriate flow channels. In this paper, we propose a high-level synthesis method considering actual volume management and channel storage through integer linear programming, providing a rational analysis of fluid caching and the temporal relationships between different fluid-handling tasks. Experimental results conducted on multiple benchmark tests demonstrate the effectiveness of the proposed method in reducing the completion time of bioassay, the number of caches, the maximum fluid caching volume, and the number of fluid-handling tasks.

关键词： Fluids Biochips Estimation Cells (biology) Integer linear programming Benchmark testing Task analysis

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A robust three-way classifier with shadowed granular-balls based on justifiable granularity

arXiv

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arXiv 2024年

作者： Yang, Jie Xiaodiao, Lingyun Wang, Guoyin Pedrycz, Witold Xia, Shuyin Zhang, Qinghua Wu, Di The Key Laboratory of Cyberspace Big Data Intelligent Security Ministry of Education Chongqing University of Posts and Telecommunications Chongqing400065 China The School of Physics and Electronic Science Zunyi Normal University Zunyi563002 China The Key Laboratory of Cyberspace Big Data Intelligent Security Chongqing University of Posts and Telecommunications Chongqing400065 China The Department of Electrical and Computer Engineering University of Alberta EdmontonAB Canada College of Computer and Information Science Southwest University Chongqing400715 China

The granular-ball (GB)-based classifier introduced by Xia, exhibits adaptability in creating coarse-grained information granules for input, thereby enhancing its generality and flexibility. Nevertheless, the current GB-based classifiers rigidly assign a specific class label to each data instance and lacks of the necessary strategies to address uncertain instances. These far-fetched certain classification approachs toward uncertain instances may suffer considerable risks. To solve this problem, we construct a robust three-way classifier with shadowed GBs for uncertain data. Firstly, combine with information entropy, we propose an enhanced GB generation method with the principle of justifiable granularity. Subsequently, based on minimum uncertainty, a shadowed mapping is utilized to partition a GB into Core region, Important region and Unessential region. Based on the constructed shadowed GBs, we establish a three-way classifier to categorize data instances into certain classes and uncertain case. Finally, extensive comparative experiments are conducted with 2 three-way classifiers, 3 state-of-the-art GB-based classifiers, and 3 classical machine learning classifiers on 12 public benchmark datasets. The results show that our model demonstrates robustness in managing uncertain data and effectively mitigates classification risks. Furthermore, our model almost outperforms the other comparison methods in both effectiveness and efficiency. Copyright © 2024, The Authors. All rights reserved.

关键词： Machine learning

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DMSACNN: Deep Multiscale Attentional Convolutional Neural Network for EEG-Based Motor Decoding

引用

IEEE Journal of Biomedical and Health Informatics 2025年 PP卷 PP页

作者： Liu, Ke Xing, Xin Yang, Tao Yu, Zhuliang Xiao, Bin Wang, Guoyin Wu, Wei Chongqing University of Posts and Telecommunications School of Computer Science and Technology Chongqing400065 China Chongqing University of Posts and Telecommunications Key Laboratory of Big Data Intelligent Computing China Chongqing University of Posts and Telecommunications Key Laboratory of Cyberspace Big Data Intelligent Security of Ministry of Education China South China University of Technology College of Automation Science and Engineering Guangzhou510641 China Chongqing Normal University National Center for Applied Mathematics in Chongqing Chongqing401331 China Shanghai Jiao Tong University School of Medicine Songjiang Hospital Songjiang Research Institute Shanghai Key Laboratory of Emotions and Affective Disorders Shanghai201600 China

Objective: Accurate decoding of electroencephalogram (EEG) signals has become more significant for the brain-computer interface (BCI). Specifically, motor imagery and motor execution (MI/ME) tasks enable the control of external devices by decoding EEG signals during imagined or real movements. However, accurately decoding MI/ME signals remains a challenge due to the limited utilization of temporal information and ineffective feature selection methods. Methods: This paper introduces DMSACNN, an end-to-end deep multiscale attention convolutional neural network for MI/ME-EEG decoding. DMSACNN incorporates a deep multiscale temporal feature extraction module to capture temporal features at various levels. These features are then processed by a spatial convolutional module to extract spatial features. Finally, a local and global feature fusion attention module is utilized to combine local and global information and extract the most discriminative spatiotemporal features. Main results: DMSACNN achieves impressive accuracies of 78.20%, 96.34% and 70.90% for hold-out analysis on the BCI-IV-2a, High Gamma and OpenBMI datasets, respectively, outperforming most of the state-of-the-art methods. Conclusion and significance: These results highlight the potential of DMSACNN in robust BCI applications. Our proposed method provides a valuable solution to improve the accuracy of the MI/ME-EEG decoding, which can pave the way for more efficient and reliable BCI systems. The source code for DMSACNN is available at https://***/xingxin-99/***. © 2025 IEEE.

关键词： Convolutional neural networks

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Grid Construction of 5G Beam-Space via Matrix Completion and Principal Component Analysis

Grid Construction of 5G Beam-Space via Matrix Completion and...

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IEEE Conference on Global Communications (GLOBECOM)

作者： Zhiqiang Yao Hao Xuan Jiawei Xu Yue Sun Lei Wei Ruituo Jiang Qingjiang Shi Zheng Peng Hunan Province Key Laboratory of Credible Intelligent Navigation and Positioning Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education National Center for Applied Mathematics in Hunan Xiangtan University Xiangtan China Huawei Technologies Shenzhen China Shenzhen Research Institute of Big Data Shenzhen China

Deriving the spatial features of user equipment (UE) and traffic distribution is crucial for optimizing real-world wireless network performance, such as load balancing and improving cell-edge user experience. In this paper, we creatively construct the beam-space grid with high-dimensional beam reference signal receiving power (RSRP), serving as spatial reference system for 5G mobile networks. However, this is a challenging task due to i) access to 3D UE geographic information is limited by privacy protection and device settings, ii) beam-RSRP with up to 75% loss in measurement reports (MRs), iii) large computation and storage requirements of grid information caused by the exploding grid number in high-dimensional beam-space. A novel approach is designed to tackle these challenges, that coherently integrate low-rank matrix completion and dimension reduction techniques. Using telco big data, specifically MRs from live networks, we recover the beam-RSRP with high-precision and construct the beam-space grid even without geographic information. This research ensures stable derivation of spatial distribution features in the beam-space grid while efficiently processing grid information.

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A Multimodal Brain Tumor Segmentation Method: Parallel Fusion of Transformer and CNN

A Multimodal Brain Tumor Segmentation Method: Parallel Fusio...

引用

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Fang Zheng Hang Zhou Guoliang Li Fuchuan Ni Engineering Research Center of Intelligent Technology for Agriculture Ministry of Education Key Laboratory of Smart Farming Technology for Agricultural Animals Ministry of Agriculture and Rural Affairs College of Informatics Huazhong Agricultural University Wuhan China College of Informatics Huazhong Agricultural University Wuhan China Engineering Research Center of Intelligent Technology for Agriculture Ministry of Education Hubei Engineering Technology Research Center of Agricultural Big Data Wuhan China

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

While convolutional neural network(CNN) have historically achieved significant success in 3D medical image segmentation, recent advancements in Vision Transformer (ViT) have led to increased popularity of Transformer architectures in this field. Leveraging the global information extraction capabilities of Transformers, we propose a novel parallel structure combining CNN and Transformer for multimodal brain tumor segmentation, named PTCNet. We introduce two key improvements to enhance multimodal segmentation:1) Introducing a novel channel attention module that replaces spatial self-attention in the Transformer to improve cross-modal information extraction.2) Enhancing the reversible feature extraction module based on residual structures to better detect small lesions. We evaluated our method on the BraTS 2023 brain metastasis dataset, achieving an average DSC of 61.42%, which is 1.12% higher than the second place. The innovative structure and improved modules of PTCNet significantly enhance performance in multimodal brain tumor segmentation tasks. Code and models are available at https://***/naiqizh/PTCNet.

关键词： Image segmentation Three-dimensional displays Computational modeling Brain tumors Computer architecture Transformers Feature extraction Brain modeling Convolutional neural networks Biomedical imaging

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Efficient Test-Time Model Adaptation without Forgetting

arXiv

引用

arXiv 2022年

作者： Niu, Shuaicheng Wu, Jiaxiang Zhang, Yifan Chen, Yaofo Zheng, Shijian Zhao, Peilin Tan, Mingkui School of Software Engineering South China University of Technology China Key Laboratory of Big Data and Intelligent Robot Ministry of Education China Tencent AI Lab China National University of Singapore Singapore Pazhou Laboratory China

Test-time adaptation (TTA) seeks to tackle potential distribution shifts between training and testing data by adapting a given model w.r.t. any testing sample. This task is particularly important for deep models when the test environment changes frequently. Although some recent attempts have been made to handle this task, we still face two practical challenges: 1) existing methods have to perform backward computation for each test sample, resulting in unbearable prediction cost to many applications;2) while existing TTA solutions can significantly improve the test performance on out-of-distribution data, they often suffer from severe performance degradation on in-distribution data after TTA (known as catastrophic forgetting). In this paper, we point out that not all the test samples contribute equally to model adaptation, and high-entropy ones may lead to noisy gradients that could disrupt the model. Motivated by this, we propose an active sample selection criterion to identify reliable and non-redundant samples, on which the model is updated to minimize the entropy loss for test-time adaptation. Furthermore, to alleviate the forgetting issue, we introduce a Fisher regularizer to constrain important model parameters from drastic changes, where the Fisher importance is estimated from test samples with generated pseudo labels. Extensive experiments on CIFAR-10-C, ImageNet-C, and ImageNet-R verify the effectiveness of our proposed method. Code is available at https://***/mr-eggplant/EATA. Copyright © 2022, The Authors. All rights reserved.

关键词： Entropy

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ASCNet: Self-supervised Video Representation Learning with Appearance-Speed Consistency

ASCNet: Self-supervised Video Representation Learning with A...

引用

International Conference on Computer Vision (ICCV)

作者： Deng Huang Wenhao Wu Weiwen Hu Xu Liu Dongliang He Zhihua Wu Xiangmiao Wu Mingkui Tan Errui Ding South China University of Technology Pazhou Laboratory Baidu Inc. Key Laboratory of Big Data and Intelligent Robot Ministry of Education

ISBN: (纸本)9781665428132

We study self-supervised video representation learning, which is a challenging task due to 1) lack of labels for explicit supervision; 2) unstructured and noisy visual information. Existing methods mainly use contrastive loss with video clips as the instances and learn visual representation by discriminating instances from each other, but they need a careful treatment of negative pairs by either relying on large batch sizes, memory banks, extra modalities or customized mining strategies, which inevitably includes noisy data. In this paper, we observe that the consistency between positive samples is the key to learn robust video representation. Specifically, we propose two tasks to learn appearance and speed consistency, respectively. The appearance consistency task aims to maximize the similarity between two clips of the same video with different playback speeds. The speed consistency task aims to maximize the similarity between two clips with the same playback speed but different appearance information. We show that optimizing the two tasks jointly consistently improves the performance on downstream tasks, e.g., action recognition and video retrieval. Remarkably, for action recognition on the UCF-101 dataset, we achieve 90.8% accuracy without using any extra modalities or negative pairs for unsupervised pretraining, which outperforms the ImageNet supervised pretrained model. Codes and models will be available.

关键词： Representation learning Visualization Computer vision Image recognition Codes Noise measurement data mining

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