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International Conference on Computer Supported Cooperative Work in Design

作者： Yushuai Hu Jing Zhao Ming Li Lin Yuan Qingzhi Zou Ronghuan Zhang Key Laboratory of Computing Power Network and Information Security Ministry of Education Shandong Computer Science Center Qilu University of Technology (Shandong Academy of Sciences) Jinan China Shandong Engineering Research Center of Big Data Applied Technology Faculty of Computer Science and Technology Qilu University of Technology (Shandong Academy of Sciences) Jinan China Shandong Provincial Key Laboratory of Computer Networks Shandong Fundamental Research Center for Computer Science Jinan China School of Intelligence and Information Engineering Shandong University of Traditional Chinese Medicine Jinan China

ISBN: (数字)9798350349184

ISBN: (纸本)9798350349191

Relation extraction is a crucial task within information extraction, and numerous models have demonstrated impressive results. However, most of the tagging-based relation triple extraction methods employ unidirectional approaches to extract subjects, objects, and relations, which may overlook crucial information. In this paper, we introduce a novel deep matrix-based bidirectional relation extraction model. Firstly, we extract forward and backward entity pairs. During the bidirectional extraction process,there may be some redundant relationships,so we use a shared encoder to connect and enhance the extraction process. Secondly, we design a low-complexity relation extraction matrix to allocate all possible relations. We assess our model using diverse benchmark datasets, and comprehensive experiments show that our approach effectively addresses subsequent triple extraction issues stemming from entity extraction failures.

关键词： Learning systems Federated learning Computational modeling Benchmark testing Information retrieval data mining Task analysis

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ReconBoost: boosting can achieve modality reconcilement 24

ReconBoost: boosting can achieve modality reconcilement

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Proceedings of the 41st International Conference on Machine Learning

作者： Cong Hua Qianqian Xu Shilong Bao Zhiyong Yang Qingming Huang Key Laboratory of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences Beijing China and School of Computer Science and Technology University of Chinese Academy of Sciences Beijing China Key Laboratory of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences Beijing China Institute of Information Engineering Chinese Academy of Sciences Beijing China and School of Cyber Security University of Chinese Academy of Sciences Beijing China School of Computer Science and Technology University of Chinese Academy of Sciences Beijing China School of Computer Science and Technology University of Chinese Academy of Sciences Beijing China and Key Laboratory of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences Beijing China and Key Laboratory of Big Data Mining and Knowledge Management Chinese Academy of Sciences Beijing China

This paper explores a novel multi-modal alternating learning paradigm pursuing a reconciliation between the exploitation of uni-modal features and the exploration of cross-modal interactions. This is motivated by the fact that current paradigms of multi-modal learning tend to explore multi-modal features simultaneously. The resulting gradient prohibits further exploitation of the features in the weak modality, leading to modality competition, where the dominant modality overpowers the learning process. To address this issue, we study the modality-alternating learning paradigm to achieve reconcilement. Specifically, we propose a new method called ReconBoost to update a fixed modality each time. Herein, the learning objective is dynamically adjusted with a reconcilement regularization against competition with the historical models. By choosing a KL-based reconcilement, we show that the proposed method resembles Friedman's Gradient-Boosting (GB) algorithm, where the updated learner can correct errors made by others and help enhance the overall performance. The major difference with the classic GB is that we only preserve the newest model for each modality to avoid overfitting caused by ensembling strong learners. Furthermore, we propose a memory consolidation scheme and a global rectification scheme to make this strategy more effective. Experiments over six multi-modal benchmarks speak to the efficacy of the method. We release the code at https://***/huacong/ReconBoost.

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Point Transformer with Federated Learning for Predicting Breast Cancer HER2 Status from Hematoxylin and Eosin-Stained Whole Slide Images

arXiv

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arXiv 2023年

作者： Li, Bao Liu, Zhenyu Shao, Lizhi Qiu, Bensheng Bu, Hong Tian, Jie Center for Biomedical Imaging University of Science and Technology of China Hefei China CAS Key Laboratory of Molecular Imaging Beijing Key Laboratory of Molecular Imaging Institute of Automation Chinese Academy of Sciences Beijing China Department of Pathology West China Hospital Sichuan University Chengdu China Key Laboratory of Big Data-Based Precision Medicine Ministry of Industry and Information Technology School of Engineering Medicine Beihang University Beijing China

Directly predicting human epidermal growth factor receptor 2 (HER2) status from widely available hematoxylin and eosin (HE)-stained whole slide images (WSIs) can reduce technical costs and expedite treatment selection. Accurately predicting HER2 requires large collections of multi-site WSIs. Federated learning enables collaborative training of these WSIs without gigabyte-size WSIs transportation and data privacy concerns. However, federated learning encounters challenges in addressing label imbalance in multi-site WSIs from the real world. Moreover, existing WSI classification methods cannot simultaneously exploit local context information and long-range dependencies in the site-end feature representation of federated learning. To address these issues, we present a point transformer with federated learning for multi-site HER2 status prediction from HE-stained WSIs. Our approach incorporates two novel designs. We propose a dynamic label distribution strategy and an auxiliary classifier, which helps to establish a well-initialized model and mitigate label distribution variations across sites. Additionally, we propose a farthest cosine sampling based on cosine distance. It can sample the most distinctive features and capture the long-range dependencies. Extensive experiments and analysis show that our method achieves state-of-the-art performance at four sites with a total of 2687 WSIs. Furthermore, we demonstrate that our model can generalize to two unseen sites with 229 WSIs. Code is available at: https://***/boyden/PointTransformerFL Copyright © 2023, The Authors. All rights reserved.

关键词： Forecasting

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Multimodal Medical Image Feature Representation and Fusion for AD Early Diagnosis

Multimodal Medical Image Feature Representation and Fusion f...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Jing Qu Ying Qu Xueliang Bai Lanxin Xu Han Wang Guixia Liu College of Computer Science and Technology Jilin University Changchun China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun China College of Science North China University of Science and Technology Tangshan China School of Information Science and Technology Institute of Computational Biology Northeast Normal University Changchun China

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

Alzheimer's disease (AD) is progressive and gets worse with time. Early detection is an effective treatment for the disease, which can timely implement effective interventions. The multi-modal medical image contains more comprehensive and abundant information about the disease, which can reflect the different aspects of AD and reduce the potential bias in single-modal diagnosis. However, an effective and reliable solution is still lacking, which can integrate multimodal neuroimaging effectively for the precision diagnosis and treatment of AD. In this work, we proposed a feature representation and fusion model of MRI and PET scans based on a multiscale convolution network and cross-attention for AD early diagnosis, named camAD. Compared with the existing models, camAD performs better with fewer pre-processing steps. Using the Alzheimer’s disease neuroimaging initiative (ADNI) datasets, we demonstrated that integrating multi-modality data outperforms single-modality models in accuracy, specificity, sensitivity, AUC, and F1 scores. Our models exhibited significantly good accuracy and generality in four classification tasks, which provided a promising way to understand the underlying mechanisms of the disorder's progression.

关键词： Neuroimaging Accuracy Sensitivity Convolution Magnetic resonance imaging Feature extraction data models Reliability Alzheimer's disease Medical diagnostic imaging

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Complementary knowledge Compilation Using the Hyper Extension Rule

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Chinese Journal of Electronics 2019年第2期28卷 259-265页

作者： NIU Dangdang LIU Lei LYU Shuai XU Yue College of Computer Science and Technology Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University

We introduce the concept of Complementary formula(COMF), which is a new and non-equivalent way for knowledge compilation(KC). Based on the Hyper extension rule(HER) which is an expansion of Extension rule(ER), we design a compilation algorithm which can formula compile each Conjunctive normal form(CNF)formula to complementary Fully complementary connected diagram(c-FCCD), named as C2C(CNF formula to cFCCD). Theoretically, c-FCCD is a kind of complementary formulae of the input formulae and can support all queries and partial transformations in KC map. Experimentally,C2C is competitive with the EPCCL compilers KCER,C2E, UKCHER, DKCHER and IKCHER.

关键词： knowledge compilation Extension rule Hyper extension rule Compilation language Each pair contains complementary literals(EPCCL) theory

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DVasMesh: Deep Structured Mesh Reconstruction from Vascular Images for Dynamics Modeling of Vessels

arXiv

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arXiv 2024年

作者： Jia, Dengqiang Yang, Xinnian Xiong, Xiaosong Huang, Shijie Hou, Feiyu Qin, Li Sun, Kaicong Chan, Kannie Wai Yan Shen, Dinggang Hong Kong Centre for Cerebro-cardiovascular Health Engineering Hong Kong000000 Hong Kong School of Data Science City University of Hong Kong Hong Kong000000 Hong Kong School of Biomedical Engineering State Key Laboratory of Advanced Medical Materials and Devices ShanghaiTech University Shanghai201210 China School of Mechanical and Automotive Engineering Shanghai University of Engineering Science Shanghai201620 China JinFeng Laboratory Chongqing401329 China Department of Biomedical Engineering City University of Hong Kong Hong Kong000000 Hong Kong Shanghai United Imaging Intelligence Co. Ltd. Shanghai200230 China Shanghai Clinical Research and Trial Center Shanghai201210 China

Vessel dynamics simulation is vital in studying the relationship between geometry and vascular disease progression. Reliable dynamics simulation relies on high-quality vascular meshes. Most of the existing mesh generation methods highly depend on manual annotation, which is time-consuming and laborious, usually facing challenges such as branch merging and vessel disconnection. This will hinder vessel dynamics simulation, especially for the population study. To address this issue, we propose a deep learning-based method, dubbed as DVasMesh to directly generate structured hexahedral vascular meshes from vascular images. Our contributions are threefold. First, we propose to formally formulate each vertex of the vascular graph by a four-element vector, including coordinates of the centerline point and the radius. Second, a vectorized graph template is employed to guide DVasMesh to estimate the vascular graph. Specifically, we introduce a sampling operator, which samples the extracted features of the vascular image (by a segmentation network) according to the vertices in the template graph. Third, we employ a graph convolution network (GCN) and take the sampled features as nodes to estimate the deformation between vertices of the template graph and target graph, and the deformed graph template is used to build the mesh. Taking advantage of end-to-end learning and discarding direct dependency on annotated labels, our DVasMesh demonstrates outstanding performance in generating structured vascular meshes on cardiac and cerebral vascular images. It shows great potential for clinical applications by reducing mesh generation time from 2 hours (manual) to 30 seconds (automatic). © 2024, CC BY.

关键词： Mesh generation

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Remote Observations in China’s Ramsar Sites: Wetland Dynamics, Anthropogenic Threats, and Implications for Sustainable Development Goals

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Journal of Remote Sensing 2021年第1期2021卷 319-331页

作者： D.Mao Z.Wang Y.Wang C.-Y.Choi M.Jia M.V.Jackson R.A.Fuller Key Laboratory of Wetland Ecology and Environment Northeast Institute of Geography and AgroecologyChinese Academy of SciencesChangchun 130102China National Earth System Science Data Center BeijingChina Department of Natural Resources Sciences University of Rhode IslandKingstonRI 02881USA School of Environmental Science and Engineering College of EngineeringSouthern University of Science and TechnologyShenzhen 518055China School of Biological Sciences The University of QueenslandBrisbaneAustralia

The Ramsar Convention on Wetlands is an international framework through which countries identify and protect important *** Ramsar wetlands are under substantial anthropogenic pressure worldwide,and tracking ecological change relies on multitemporal data ***,we evaluated the spatial extent,temporal change,and anthropogenic threat to Ramsar wetlands at a national scale across China to determine whether their management is currently *** analyzed Landsat data to examine wetland dynamics and anthropogenic threats at the 57 Ramsar wetlands in China between 1980 and *** reveal that Ramsar sites play important roles in preventing wetland loss compared to the dramatic decline of wetlands in the surrounding ***,there are declines in wetland area at 18 Ramsar *** those,six lost a wetland area greater than 100 km^(2),primarily caused by agricultural *** expansion of anthropogenic land covers occurred within 43(75%)Ramsar sites,and anthropogenic threats from land cover change were particularly notable in eastern *** pond expansion and Spartina alterniflora invasion were prominent threats to coastal Ramsar *** observations within China’s Ramsar sites,which in management regulations have higher levels of protection than other wetlands,can help track progress towards achieving United Nations Sustainable Development Goals(SDGs).The study findings suggest that further and timely actions are required to control the loss and degradation of wetland ecosystems.

关键词： Sustainable threat wetland

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PAM: A Propagation-Based Model for Segmenting Any 3D Objects across Multi-Modal Medical Images

arXiv

引用

arXiv 2024年

作者： Chen, Zifan Nan, Xinyu Li, Jiazheng Zhao, Jie Li, Haifeng Lin, Ziling Li, Haoshen Chen, Heyun Liu, Yiting Tang, Lei Zhang, Li Dong, Bin Center for Data Science Peking University Beijing China Department of Radiology Key Laboratory of Carcinogenesis and Translational Research Ministry of Education Peking University Cancer Hospital and Institute Beijing China National Engineering Laboratory for Big Data Analysis and Applications Peking University Beijing China Peking University Beijing China Center for Machine Learning Research Peking University Beijing China National Biomedical Imaging Center Peking University Beijing China

Background: Volumetric segmentation is crucial for medical imaging applications but faces significant challenges. Current approaches often require extensive manual annotations and scenario-specific model training, limiting their transferability across different tasks or modalities. While general segmentation models offer some versatility in natural image processing, they struggle with the unique characteristics of medical images. There is an urgent need in clinical practice for a new segmentation approach that can effectively handle medical imagery features while maintaining adaptability across various three-dimensional objects and imaging modalities. Methods: We introduce PAM (Propagating Anything Model), a propagation-based segmentation approach that operates on 3D medical image volumes using a 2D prompt (bounding box or sketch mask). PAM extrapolates this initial input to generate a complete 3D segmentation by modeling inter-slice structural relationships, establishing a continuous information flow within 3D medical structures. This approach enhances segmentation effectiveness across various imaging modalities by focusing on structural and semantic continuities rather than isolating specific objects. The model combines a CNN-based UNet architecture for intra-slice information processing with a Transformer-based attention module to facilitate inter-slice propagation. This innovative framework results in a method with unique generalizability, capable of segmenting diverse 3D objects across different medical imaging modalities. Results: PAM demonstrated superior performance on 44 diverse medical datasets, notably improving the dice similarity coefficient (DSC) for hundreds of segmentation object types and various medical imaging modalities. Compared to modern models like MedSAM and SegVol, PAM achieved an average DSC improvement of over 18.1%, while maintaining stable predictions despite prompt deviation (one-way ANOVA test, P ≥ 0.5985) and varying propagation confi

关键词： Semantic Segmentation

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Roller-Quadrotor: A Novel Hybrid Terrestrial/Aerial Quadrotor with Unicycle-Driven and Rotor-Assisted Turning

Roller-Quadrotor: A Novel Hybrid Terrestrial/Aerial Quadroto...

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IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS)

作者： Zhi Zheng Jin Wang Yuze Wu Qifeng Cai Huan Yu Ruibin Zhang Jie Tu Jun Meng Guodong Lu Fei Gao The State Key Laboratory of Fluid Power and Mechatronic Systems School of Mechanical Engineering Zhejiang University Hangzhou China Robotics Institute of Zhejiang University Hangzhou China Robotics Research Center of Yuyao City Ningbo China The State Key Laboratory of Industrial Control Technology Zhejiang University Hangzhou China Huzhou Institute of Zhejiang University Huzhou China Center for Data Mining and Systems Biology College of Electrical Engineering Zhejiang University Hangzhou China

The Roller-Quadrotor is a novel quadrotor that combines the maneuverability of aerial drones with the endurance of ground vehicles. This work focuses on the design, modeling, and experimental validation of the Roller-Quadrotor. Flight capabilities are achieved through a quadrotor config-uration, with four thrust-providing actuators. Additionally, rolling motion is facilitated by a unicycle-driven and rotor-assisted turning structure. By utilizing terrestrial locomotion, the vehicle can overcome rolling and turning resistance, thereby conserving energy compared to its flight mode. This innovative approach not only tackles the inherent challenges of traditional rotorcraft but also enables the vehicle to roll through narrow gaps and overcome obstacles by taking advantage of its aerial mobility. We develop comprehensive models and controllers for the Roller-Quadrotor and validate their performance through experiments. The results demonstrate its seamless transition between aerial and terrestrial locomotion, as well as its ability to safely roll through gaps half the size of its diameter. Moreover, the terrestrial range of the vehicle is approximately 2.8 times greater, while the operating time is about 41.2 times longer compared to its aerial capabilities. These findings underscore the feasibility and effectiveness of the proposed structure and control mechanisms for efficient rolling through challenging terrains while conserving energy.

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Medical Image Segmentation Use Convolutional Attention Augmentation TransUNet with Skip Connection Enhancement

Medical Image Segmentation Use Convolutional Attention Augme...

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International Conference on Computer Supported Cooperative Work in Design

作者： Qingzhi Zou Jing Zhao Ming Li Ling Chen Lin Yuan Ronghuan Zhang Yushuai Hu Key Laboratory of Computing Power Network and Information Security Ministry of Education Shandong Computer Science Center Qilu University of Technology (Shandong Academy of Sciences) Jinan China Shandong Engineering Research Center of Big Data Applied Technology Faculty of Computer Science and Technology Qilu University of Technology (Shandong Academy of Sciences) Jinan China Shandong Provincial Key Laboratory of Computer Networks Shandong Fundamental Research Center for Computer Science Jinan China School of Intelligence and Information Engineering Shandong University of Traditional Chinese Medicine Jinan China

ISBN: (数字)9798350349184

ISBN: (纸本)9798350349191

The primary objective of medical image segmentation is the isolation of pathological tissues and distinct organs from medical images, thereby assisting in medical diagnosis. The methods employed for medical image segmentation encompass convolutional neural networks and transformer-based methods. Although the self-attention mechanism in Transformers improves its capability to capture long-range dependencies, it have limitations in learning local (contextual) relationships between pixels. Some previous research has tried to solve this problem by incorporating convolutional layers into the encoder or decoder of transformers, but sometimes feature inconsistencies arise. To better extract local features from images using convolutional neural networks and to fuse low-resolution and high-resolution features from higher-level and lower features, we propose the Convolutional Attention Augmentation TransUNet (CAA-TransUNet) model. In our model, firstly, we propose a convolutional attention augmentation module that enhances both local and global features by suppressing irrelevant background information. Secondly, we have integrated attention gates into the skip connections to aggregate feature information from various stages of the encoder during the upsampling process. Finally, we employ the technique of aggregating the loss of multi-stage features to expedite convergence speed and enhance performance. The experimental results on three public datasets demonstrate that our proposed model significantly outperforms the baseline methods.

关键词： Image segmentation Pathology Computational modeling Aggregates Logic gates Feature extraction Transformers

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