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arXiv 2024年

作者： Wang, Zi Wang, Fanwen Qin, Chen Lyu, Jun Ouyang, Cheng Wang, Shuo Li, Yan Yu, Mengyao Zhang, Haoyu Guo, Kunyuan Shi, Zhang Li, Qirong Xu, Ziqiang Zhang, Yajing Li, Hao Hua, Sha Chen, Binghua Sun, Longyu Sun, Mengting Li, Qin Chu, Ying-Hua Bai, Wenjia Qin, Jing Zhuang, Xiahai Prieto, Claudia Young, Alistair Markl, Michael Wang, He Wu, Lianming Yang, Guang Qu, Xiaobo Wang, Chengyan Department of Electronic Science Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance National Institute for Data Science in Health and Medicine Xiamen University Xiamen China Department of Bioengineering and Imperial-X Imperial College London London United Kingdom Cardiovascular Research Centre Royal Brompton Hospital London United Kingdom Department of Electrical and Electronic Engineering & Imperial-X Imperial College London London United Kingdom Psychiatry Neuroimaging Laboratory Brigham and Women’s Hospital Harvard Medical School Boston United States Department of Computing Department of Brain Sciences Imperial College London London United Kingdom Digital Medical Research Center School of Basic Medical Sciences Fudan University Shanghai China Department of Radiology Ruijin Hospital Shanghai Jiao Tong University School of Medicine Shanghai China Human Phenome Institute Fudan University Shanghai China Department of Radiology Zhongshan Hospital Fudan University Shanghai China School of Health Science and Engineering University of Shanghai for Science and Technology Shanghai China GE Healthcare Beijing China Institute of Science and Technology for Brain-Inspired Intelligence Fudan University Shanghai China Department of Cardiovascular Medicine Ruijin Hospital Lu Wan Branch Shanghai Jiao Tong University School of Medicine Shanghai China Department of Radiology Ren Ji Hospital School of Medicine Shanghai Jiao Tong University Shanghai China Siemens Healthineers Ltd. Shanghai China School of Nursing The Hong Kong Polytechnic University Hong Kong School of Data Science Fudan University Shanghai China School of Engineering Pontificia Universidad Católica de Chile Santiago Chile School of Biomedical Engineering and Imaging Sciences King’s College London London United Kingdom Millenium Institute for Intelligent Healthcare Engineering Santiago Chile Department of Radiology Feinberg School of Medicine Northwestern University Chicago Unit

The released CMRxRecon2024 dataset is currently the largest and most protocol-diverse publicly available k-space dataset including multi-modality and multi-view cardiac MRI data from 330 healthy volunteers, and each o... 详细信息

关键词： Adversarial machine learning

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Distributed Computation Offloading and Power Control for UAV-Enabled Internet of Medical Things

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ACM Transactions on Internet Technology 1000年

作者： Jiakun Gao Xiaolong Xu Lianyong Qi Wanchun Dou Xiaoyu Xia Xiaokang Zhou School of Software Nanjing University of Information Science and Technology NanJing China School of Software Nanjing University of Information Science and Technology NanJing China and Jiangsu Province Engineering Research Center of Advanced Computing and Intelligent Services Jiangsu Collaborative Innovation Center of Atmospheric Environment and Equipment Technology (CICAEET) Nanjing University of Information Science and Technology Nanjing China College of Computer Science and Technology China University of Petroleum (East China) QingDao China and State Key Laboratory for Novel Software Technology Nanjing University Nanjing China State Key Laboratory for Novel Software Technology Nanjing University Nanjing China School of Computer Technology RMIT University Victoria Australia Faculty of Data Science Shiga University Hikone Japan

The advancement of the Internet of Medical Things (IoMT) has led to the emergence of various health and emotion care services, e.g., health monitoring. To cater to increasing computational requirements of IoMT services, Mobile Edge computing (MEC) has emerged as an indispensable technology in smart health. Benefiting from the cost-effectiveness of deployment, unmanned aerial vehicles (UAVs) equipped with MEC servers in Non-Orthogonal Multiple Access (NOMA) have emerged as a promising solution for providing smart health services in proximity to medical devices (MDs). However, the escalating number of MDs and the limited availability of communication resources of UAVs give rise to a significant increase in transmission latency. Moreover, due to the limited communication range of UAVs, the geographically-distributed MDs lead to workload imbalance of UAVs, which deteriorates the service response delay. To this end, this paper proposes a UAV-enabled Distributed computation Offloading and Power control method with Multi-Agent, named DOPMA, for NOMA-based IoMT environment. Specifically, this paper introduces computation and transmission queue models to analyze the dynamic characteristics of task execution latency and energy consumption. Moreover, a credit assignment scheme-based reward function is designed considering both system-level rewards and rewards tailored to each MD, and an improved multi-agent deep deterministic policy gradient algorithm is developed to derive offloading and power control decisions independently. Extensive simulations demonstrate that the proposed method outperforms existing schemes, achieving \(7.1\%\) reduction in energy consumption and \(16\%\) decrease in average delay.

关键词： Internet of Medical Things (IoMT) Mobile Edge computing (MEC) Unmanned Aerial Vehicles (UAV) Non-Orthogonal Multiple Access (NOMA)

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Insight-HXMT and GECAM-C observations of the brightest-of-all-time GRB 221009A

arXiv

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arXiv 2023年

作者： An, Zheng-Hua Antier, S. Bi, Xing-Zi Bu, Qing-Cui Cai, Ce Cao, Xue-Lei Camisasca, Anna-Elisa Chang, Zhi Chen, Gang Chen, Li Chen, Tian-Xiang Chen, Wen Chen, Yi-Bao Chen, Yong Chen, Yu-Peng Coughlin, Michael W. Cui, Wei-Wei Dai, Zi-Gao Hussenot-Desenonges, T. Du, Yan-Qi Du, Yuan-Yuan Du, Yun-Fei Fan, Cheng-Cheng Frontera, Filippo Gao, He Gao, Min Ge, Ming-Yu Gong, Ke Gu, Yu-Dong Guan, Ju Guo, Dong-Ya Guo, Zhi-Wei Guidorzi, Cristiano Han, Da-Wei He, Jian-Jian He, Jun-Wang Hou, Dong-Jie Huang, Yue Huo, Jia Ji, Zhen Jia, Shu-Mei Jiang, Wei-Chun Kann, David Alexander Klotz, A. Kong, Ling-Da Lan, Lin Li, An Li, Bing Li, Chao-Yang Li, Cheng-Kui Li, Gang Li, Mao-Shun Li, Ti-Pei Li, Wei Li, Xiao-Bo Li, Xin-Qiao Li, Xu-Fang Li, Yan-Guo Li, Zheng-Wei Liang, Jing Liang, Xiao-Hua Liao, Jin-Yuan Lin, Lin Liu, Cong-Zhan Liu, He-Xin Liu, Hong-Wei Liu, Jia-Cong Liu, Xiao-Jing Liu, Ya-Qing Liu, Yu-Rong Lu, Fang-Jun Lu, Hong Lu, Xue-Feng Luo, Qi Luo, Tao Ma, Bin-Yuan Ma, Fu-Li Ma, Rui-Can Ma, Xiang Maccary, Romain Mao, Ji-Rong Meng, Bin Nie, Jian-Yin Orlandini, Mauro Ou, Ge Peng, Jing-Qiang Peng, Wen-Xi Qiao, Rui Qu, Jin-Lu Ren, Xiao-Qin Shi, Jing-Yan Shi, Qi Song, Li-Ming Song, Xin-Ying Su, Ju Sun, Gong-Xing Sun, Liang Sun, Xi-Lei Tan, Wen-Jun Tan, Ying Tao, Lian Tuo, You-Li Turpin, Damien Wang, Jin-Zhou Wang, Chen Wang, Chen-Wei Wang, Hong-Jun Wang, Hui Wang, Jin Wang, Ling-Jun Wang, Peng-Ju Wang, Ping Wang, Wen-Shuai Wang, Xiang-Yu Wang, Xi-Lu Wang, Yu-Sa Wang, Yue Wen, Xiang-Yang Wu, Bo-Bing Wu, Bai-Yang Wu, Hong Xiao, Sheng-Hui Xiao, Shuo Xiao, Yun-Xiang Xie, Sheng-Lun Xiong, Shao-Lin Xiong, Sen-Lin Xu, Dong Xu, He Xu, Yan-Jun Xu, Yan-Bing Xu, Ying-Chen Xu, Yu-Peng Xue, Wang-Chen Yang, Sheng Yang, Yan-Ji Yang, Zi-Xu Ye, Wen-Tao Yi, Qi-Bin Yi, Shu-Xu Yin, Qian-Qing You, Yuan Yu, Yun-Wei Yu, Wei Yu, Wen-Hui Zeng, Ming Zhang, Bing Zhang, Bin-Bin Zhang, Da-Li Zhang, Fan Zhang, Hong-Mei Zhang, Juan Key Laboratory of Particle Astrophysics Institute of High Energy Physics Chinese Academy of Sciences 19B Yuquan Road Beijing100049 China Institut für Astronomie und Astrophysik Kepler Center for Astro and Particle Physics Eberhard Karls Universität Sand 1 Tübingen72076 Germany College of Physics Hebei Key Laboratory of Photophysics Research and Application Hebei Normal University Hebei Shijiazhuang050024 China Department of Physics and Earth Science University of Ferrara Via Saragat 1 Ferrara44122 Italy Department of Astronomy Beijing Normal University Beijing100875 China CAS Key Laboratory for Research in Galaxies and Cosmology Department of Astronomy University of Science and Technology of China Hefei230026 China Department of Astronomy Tsinghua University Beijing100084 China Southwest Jiaotong University Chengdu610092 China INAF Osservatorio di Astrofisica e Scienza dello Spazio di Bologna Via Piero Gobetti 101 Bologna40129 Italy University of Chinese Academy of Sciences Chinese Academy of Sciences Beijing100049 China College of physics Sciences Technology Hebei University No. 180 Wusi Dong Road Lian Chi District Hebei Baoding071002 China INFN - Sezione di Ferrara Via Saragat 1 Ferrara44122 Italy Physics and Space Science College China West Normal University China Yunnan Observatories Chinese Academy of Sciences Yunnan Province Kunming650011 China Key Laboratory of Space Astronomy and Technology National Astronomical Observatories Chinese Academy of Sciences Beijing100012 China School of Astronomy and Space Science Nanjing University Nanjing210093 China School of Physics and Optoelectronics Xiangtan University Yuhu District Hunan Xiangtan411105 China Guizhou Provincial Key Laboratory of Radio Astronomy and Data Processing Guizhou Normal University Guiyang550001 China Institute of Astrophysics Central China Normal University Wuhan430079 China Nevada Center for Astrophysics Department of Physics and Astronomy University of

GRB 221009A is the brightest gamma-ray burst ever detected since the discovery of this kind of energetic explosions. However, an accurate measurement of the prompt emission properties of this burst is very challenging due to its exceptional brightness. With joint observations of Insight-HXMT and GECAM-C, we made an unprecedentedly accurate measurement of the emission during the first ∼1800 s of GRB 221009A, including its precursor, main emission (ME, which dominates the burst in flux), flaring emission and early afterglow, in the hard X-ray to soft gamma-ray band from ∼ 10 keV to ∼ 6 MeV. Based on the GECAM-C unsaturated data of the ME, we measure a record-breaking isotropic equivalent energy (Eiso) of ∼ 1.5 × 1055 erg, which is about eight times the total rest-mass energy of the Sun. The early afterglow data require a significant jet break between 650 s and 1100 s, most likely at ∼ 950 s from the afterglow starting time TAG, which corresponds to a jet opening angle of ∼ 0.7◦ (ηγn)1/8, where n is the ambient medium density in units of cm−3 and ηγ is the ratio between γ-ray energy and afterglow kinetic energy. The beaming-corrected total γ-ray energy Eγ is ∼ 1.15 × 1051 (ηγn)1/4 erg, which is typical for long GRBs. These results suggest that this GRB may have a special central engine, which could launch and collimate a very narrowly beamed jet with an ordinary energy budget, leading to exceptionally luminous gamma-ray radiation per unit solid angle. Alternatively, more GRBs might have such a narrow and bright beam, which are missed by an unfavorable viewing angle or have been detected without distance measurement. Copyright © 2023, The Authors. All rights reserved.

关键词： Gamma rays

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The state-of-the-art in Cardiac MRI Reconstruction: Results of the CMRxRecon Challenge in MICCAI 2023

arXiv

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arXiv 2024年

作者： Lyu, Jun Qin, Chen Wang, Shuo Wang, Fanwen Li, Yan Wang, Zi Guo, Kunyuan Ouyang, Cheng Tänzer, Michael Liu, Meng Sun, Longyu Sun, Mengting Li, Qin Shi, Zhang Hua, Sha Li, Hao Chen, Zhensen Zhang, Zhenlin Xin, Bingyu Metaxas, Dimitris N. Yiasemis, George Teuwen, Jonas Zhang, Liping Chen, Weitian Pang, Yanwei Liu, Xiaohan Razumov, Artem Dylov, Dmitry V. Dou, Quan Yan, Kang Xue, Yuyang Du, Yuning Dietlmeier, Julia Garcia-Cabrera, Carles Hemidi, Ziad Al-Haj Vogt, Nora Xu, Ziqiang Zhang, Yajing Chu, Ying-Hua Chen, Weibo Bai, Wenjia Zhuang, Xiahai Qin, Jing Wu, Lianmin Yang, Guang Qu, Xiaobo Wang, He Wang, Chengyan Psychiatry Neuroimaging Laboratory Brigham and Women’s Hospital Harvard Medical School 399 Revolution Drive BostonMA02215 United States Department of Electrical and Electronic Engineering & I-X Imperial College London United Kingdom Digital Medical Research Center School of Basic Medical Sciences Fudan University Shanghai China Department of Bioengineering & I-X Imperial College London LondonW12 7SL United Kingdom Cardiovascular Magnetic Resonance Unit Royal Brompton Hospital Guy’s and St Thomas’ NHS Foundation Trust LondonSW3 6NP United Kingdom Department of Radiology Ruijin Hospital Shanghai Jiao Tong University School of Medicine Shanghai China Department of Electronic Science Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance National Institute for Data Science in Health and Medicine Institute of Artificial Intelligence Xiamen University Xiamen361102 China Department of Computing Department of Brain Sciences Imperial College London LondonSW7 2AZ United Kingdom Human Phenome Institute Fudan University 825 Zhangheng Road Pudong New District Shanghai201203 China Department of Radiology Zhongshan Hospital Fudan University Shanghai China Department of Cardiovascular Medicine Ruijin Hospital Lu Wan Branch Shanghai Jiao Tong University School of Medicine Shanghai China Institute of Science and Technology for Brain-Inspired Intelligence Fudan University Shanghai200433 China Department of Computer Science Rutgers University PiscatawayNJ08854 United States AI for Oncology Netherlands Cancer Institute Plesmanlaan 121 Amsterdam1066 CX Netherlands Department of Imaging and Interventional Radiology The Chinese University of Hong Kong Hong Kong TJK-BIIT Lab School of Electrical and Information Engineering Tianjin University Tianjin300072 China Skolkovo Institute Of Science And Technology Center for Artificial Intelligence Technology 30/1 Bolshoy blvd. Moscow121205 Russia Department of Biomedical Engineering University of Virginia

Cardiac magnetic resonance imaging (MRI) provides detailed and quantitative evaluation of the heart’s structure, function, and tissue characteristics with high-resolution spatial-temporal imaging. However, its slow imaging speed and motion artifacts are notable limitations. Undersampling reconstruction, especially data-driven algorithms, has emerged as a promising solution to accelerate scans and enhance imaging performance using highly under-sampled data. Nevertheless, the scarcity of publicly available cardiac k-space datasets and evaluation platform hinder the development of data-driven reconstruction algorithms. To address this issue, we organized the Cardiac MRI Reconstruction Challenge (CMRxRecon) in 2023, in collaboration with the 26th International Conference on Medical Image computing and Computer-Assisted Intervention (MICCAI). CMRxRecon presented an extensive k-space dataset comprising cine and mapping raw data, accompanied by detailed annotations of cardiac anatomical structures. With overwhelming participation, the challenge attracted more than 285 teams and over 600 participants. Among them, 22 teams successfully submitted Docker containers for the testing phase, with 7 teams submitted for both cine and mapping tasks. All teams use deep learning based approaches, indicating that deep learning has predominately become a promising solution for the problem. The first-place winner of both tasks utilizes the E2E-VarNet architecture as backbones. In contrast, U-Net is still the most popular backbone for both multi-coil and single-coil reconstructions. This paper provides a comprehensive overview of the challenge design, presents a summary of the submitted results, reviews the employed methods, and offers an in-depth discussion that aims to inspire future advancements in cardiac MRI reconstruction models. The summary emphasizes the effective strategies observed in Cardiac MRI reconstruction, including backbone architecture, loss function, pre-processing techn

关键词： Mapping

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Common and Rare Fundus Diseases Identification Using Vision-Language Foundation Model with Knowledge of Over 400 Diseases

arXiv

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arXiv 2024年

作者： Wang, Meng Lin, Tian Lin, Aidi Yu, Kai Peng, Yuanyuan Wang, Lianyu Chen, Cheng Zou, Ke Liang, Huiyu Chen, Man Yao, Xue Zhang, Meiqin Huang, Binwei Zheng, Chaoxin Zhang, Peixin Chen, Wei Luo, Yilong Chen, Yifan Xia, Honghe Shi, Tingkun Zhang, Qi Guo, Jinming Chen, Xiaolin Wang, Jingcheng Chung Tham, Yih Liu, Dianbo Wong, Wendy Thakur, Sahil Fenner, Beau Fang, Danqi Liu, Siying Liu, Qingyun Huang, Yuqiang Zeng, Hongqiang Meng, Yanda Zhou, Yukun Jiang, Zehua Qiu, Minghui Zhang, Changqing Chen, Xinjian Wang, Sophia Y. Lee, Cecilia S. Sobrin, Lucia Cheung, Carol Y. Pang, Chi Pui Keane, Pearse A. Cheng, Ching-Yu Chen, Haoyu Fu, Huazhu Centre for Innovation & Precision Eye Health Yong Loo Lin School of Medicine National University of Singapore Singapore117549 Singapore Department of Ophthalmology Yong Loo Lin School of Medicine National University of Singapore Singapore117549 Singapore Joint Shantou International Eye Center Shantou University Chinese University of Hong Kong Guangdong Shantou515041 China Department of Radiology University of Pennsylvania PhiladelphiaPA19104 United States School of Biomedical Engineering Anhui Medical University Anhui Hefei230032 China College of Computer Science and Technology Nanjing University of Aeronautics and Astronautics Jiangsu Nanjing211100 China Center of Advanced Medical Computing and Analysis Massachusetts General Hospital Harvard Medical School BostonMA02114 United States National Key Laboratory of Fundamental Science on Synthetic Vision College of Computer Science Sichuan University Sichuan Chengdu610065 China Big Vision Medical Technology Ltd. Suzhou China Singapore Eye Research Institute Singapore National Eye Centre Singapore Duke-NUS Medical School Singapore Department of Ophthalmology and Visual Sciences The Chinese University of Hong Kong 999077 Hong Kong Shenzhen Longgang E.N.T Hospital Guangdong Shenzhen518172 China Dongguan Songshan Lake Central Hospital Guangdong Dongguan523326 China Department of Computer Science University of Exeter ExeterEX4 4RN United Kingdom Centre for Medical Image Computing University College London London United Kingdom NIHR Biomedical Research Centre Moorfields Eye Hospital NHS Foundation Trust London United Kingdom Institute of Ophthalmology University College London London United Kingdom Tsinghua Medicine of Tsinghua University Beijing100084 China School of Clinical Medicine Beijing Tsinghua Changgung Hospital Beijing102218 China Foshan Aier Eye Hospital Guangdong Foshan528000 China College of Intelligence and Computing Tianjin University Tianjin300350 China School of Electr

Previous foundation models for retinal images were pre-trained with limited disease categories and knowledge base. Here we introduce RetiZero, a vision-language foundation model that leverages knowledge from over 400 fundus diseases. For RetiZero's pre-training, we compiled 341,896 fundus images paired with text descriptions, sourced from public datasets, ophthalmic literature, and online resources, encompassing a diverse range of diseases across multiple ethnicities and countries. RetiZero exhibits superior performance in several downstream tasks, including zero-shot disease recognition, image-to-image retrieval, and internal- and cross-domain disease identification. In zero-shot scenarios, RetiZero achieves Top5 accuracy scores of 0.8430 for 15 fundus diseases and 0.7561 for 52 fundus diseases. For image retrieval, it achieves Top5 scores of 0.9500 and 0.8860 for the same disease sets, respectively. Clinical evaluations show that RetiZero's Top3 zero-shot performance surpasses the average of 19 ophthalmologists from Singapore, China, and the United States. Furthermore, RetiZero significantly enhances clinicians' accuracy in diagnosing fundus disease. These findings underscore the value of integrating the RetiZero foundation model into clinical settings, where a variety of fundus diseases are encountered. © 2024, CC0.

关键词： Ophthalmology

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Correction: RPTOR blockade suppresses brain metastases of NSCLC by interfering the ceramide metabolism via hijacking YY1 binding

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Journal of experimental & clinical cancer research : CR 2024年第1期43卷 37页

作者： Ying Lin Yun Wu Qiangzu Zhang Xunwei Tu Sufang Chen Junfan Pan Nengluan Xu Ming Lin Peiwei She Gang Niu Yusheng Chen Hongru Li Department of Respiratory and Critical Care Medicine Shengli Clinical Medical College Fujian Medical University Fujian Provincial Hospital Fuzhou 350001 Fujian China. Department of General Practice Medicine Fujian Provincial Hospital Fuzhou 350001 China. The High Performance Computing Research Center Institute of Computing Technology Chinese Academy of Sciences Beijing 100095 China. The Centre for Experimental Research in Clinical Medicine Fujian Provincial Hospital Fuzhou 350001 Fujian China. The High Performance Computing Research Center Institute of Computing Technology Chinese Academy of Sciences Beijing 100095 China. g.niu@***. Department of Respiratory and Critical Care Medicine Shengli Clinical Medical College Fujian Medical University Fujian Provincial Hospital Fuzhou 350001 Fujian China. cysktz@***. Department of Respiratory and Critical Care Medicine Shengli Clinical Medical College Fujian Medical University Fujian Provincial Hospital Fuzhou 350001 Fujian China. muzi131122@***. Fujian Provincial Key Laboratory of Medical Big Data Engineering Fujian Provincial Hospital Shengli Clinical College of Fujian Medical University Fuzhou 350001 Fujian China. muzi131122@***.

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Why is the Winner the Best?

Why is the Winner the Best?

引用

Conference on Computer Vision and Pattern Recognition (CVPR)

作者： M. Eisenmann A. Reinke V. Weru M. D. Tizabi F. Isensee T. J. Adler S. Ali V. Andrearczyk M. Aubreville U. Baid S. Bakas N. Balu S. Bano J. Bernal S. Bodenstedt A. Casella V. Cheplygina M. Daum M. De Bruijne A. Depeursinge R. Dorent J. Egger D. G. Ellis S. Engelhardt M. Ganz N. Ghatwary G. Girard P. Godau A. Gupta L. Hansen K. Harada M. Heinrich N. Heller A. Hering A. Huaulmé P. Jannin A. E. Kavur O. Kodym M. Kozubek J. Li H. Li J. Ma C. Martín-Isla B. Menze A. Noble V. Oreiller N. Padoy S. Pati K. Payette T. Rädsch J. Rafael-Patiño V. Singh Bawa S. Speidel C. H. Sudre K. Van Wijnen M. Wagner D. Wei A. Yamlahi M. H. Yap C. Yuan M. Zenk A. Zia D. Zimmerer D. Aydogan B. Bhattarai L. Bloch R. Brüngel J. Cho C. Choi Q. Dou I. Ezhov C. M. Friedrich C. Fuller R. R. Gaire A. Galdran Á. García Faura M. Grammatikopoulou S. Hong M. Jahanifar I. Jang A. Kadkhodamohammadi I. Kang F. Kofler S. Kondo H. Kuijf M. Li M. Luu T. Martinčič P. Morais M. A. Naser B. Oliveira D. Owen S. Pang J. Park S. Park S. Płotka E. Puybareau N. Rajpoot K. Ryu N. Saeed A. Shephard P. Shi D. Štepec R. Subedi G. Tochon H. R. Torres H. Urien J. L. Vilaça K. A. Wahid H. Wang J. Wang L. Wang X. Wang B. Wiestler M. Wodzinski F. Xia J. Xie Z. Xiong S. Yang Y. Yang Z. Zhao K. Maier-Hein P. F. Jäger A. Kopp-Schneider L. Maier-Hein Division of Intelligent Medical Systems German Cancer Research Center (DKFZ) Heidelberg Germany Helmholtz Imaging German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Division of Biostatistics German Cancer Research Center (DKFZ) Heidelberg Germany Division of Medical Image Computing German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Engineering and Physical Sciences School of Computing University of Leeds Leeds UK Institute of Informatics School of Management HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland Sierre Switzerland Department of Nuclear Medicine and Molecular Imaging Lausanne University Hospital Lausanne Switzerland Technische Hochschule Ingolstadt Ingolstadt Germany Center for Artificial Intelligence and Data Science for Integrated Diagnostics (AI2D) and Center for Biomedical Image Computing and Analytics (CBICA) University of Pennsylvania Philadelphia PA USA Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology University of Washington Seattle WA USA Department of Computer Science Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS) University College London London UK Universitat Autònoma de Barcelona & Computer Vision Center Barcelona Spain Division of Translational Surgical Oncology National Center for Tumor Diseases (NCT/UCC) Dresden Dresden Germany Department of Advanced Robotics Istituto Italiano di Tecnologia Italy Department of Electronics Information and Bioengineering Politecnico di Milano Milan Italy IT University of Copenhagen Copenhagen Denmark Department of General Visceral and Transplantation Surgery Heidelberg University Hospital Heidelberg Germany Department of Radiology and Nuc

International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do they really generate scientific progress? What are common and successful participation strategies? What makes a solution superior to a competing method? To address this gap in the literature, we performed a multicenter study with all 80 competitions that were conducted in the scope of IEEE ISBI 2021 and MICCAI 2021. Statistical analyses performed based on comprehensive descriptions of the submitted algorithms linked to their rank as well as the underlying participation strategies revealed common characteristics of winning solutions. These typically include the use of multi-task learning (63%) and/or multi-stage pipelines (61%), and a focus on augmentation (100%), image preprocessing (97%), data curation (79%), and post-processing (66%). The “typical” lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning. Two core general development strategies stood out for highly-ranked teams: the reflection of the metrics in the method design and the focus on analyzing and handling failure cases. According to the organizers, 43% of the winning algorithms exceeded the state of the art but only 11% completely solved the respective domain problem. The insights of our study could help researchers (1) improve algorithm development strategies when approaching new problems, and (2) focus on open research questions revealed by this work.

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Changing life expectancy in European countries 1990–2021: a subanalysis of causes and risk factors from the Global Burden of Disease Study 2021

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The Lancet Public Health 2025年第3期10卷 e172-e188页

作者： Steel, Nicholas Bauer-Staeb, Clarissa Maria Mercedes Ford, John A. Abbafati, Cristiana Abdalla, Mohammed Altigani Abdelkader, Atef Abdi, Parsa Zuñiga, Roberto Ariel Abeldaño Abiodun, Olugbenga Olusola Abolhassani, Hassan Abu-Gharbieh, Eman Abukhadijah, Hana J. Abu-Zaid, Ahmed Addo, Isaac Yeboah Addolorato, Giovanni Adekanmbi, Victor Adetunji, Juliana Bunmi Adeyeoluwa, Temitayo Esther Agardh, Emilie E. Agyemang-Duah, Williams Ahmad, Danish Ahmed, Ayman Ahmed, Syed Anees Akinosoglou, Karolina Akkaif, Mohammed Ahmed Al Awaidy, Salah Al Hasan, Syed Mahfuz Al Zaabi, Omar Ali Mohammed Aldridge, Robert W. Algammal, Abdelazeem M. Al-Gheethi, Adel Ali Saeed Ali, Abid Ali, Mohammed Usman Ali, Syed Shujait Ali, Waad Alicandro, Gianfranco Alif, Sheikh Mohammad Al-Jumaily, Adel Allebeck, Peter Alrawashdeh, Ahmad Al-Rifai, Rami H. Alsabri, Mohammed A. Alshahrani, Najim Z. Aluh, Deborah Oyine Al-Wardat, Mohammad Al-Zyoud, Walid A. Amiri, Sohrab Anderlini, Deanna Andrei, Catalina Liliana Anil, Abhishek Anvari, Saeid Anyasodor, Anayochukwu Edward Appiah, Seth Christopher Yaw Aquilano, Michele Arabloo, Jalal Arafat, Mosab Areda, Demelash Aremu, Abdulfatai Armani, Keivan Armocida, Benedetta Ärnlöv, Johan Asaduzzaman, Muhammad Astell-Burt, Thomas Aujayeb, Avinash Ausloos, Marcel Azadnajafabad, Sina Aziz, Shahkaar Azzam, Ahmed Y. Babu, Giridhara Rathnaiah Badache, Andreea Corina Badiye, Ashish D. Bahramian, Saeed Baig, Atif Amin Baker, Jennifer L. Bansal, Hansi Bärnighausen, Till Winfried Barone, Mark Thomaz Ugliara Barrow, Amadou Barteit, Sandra Bashir, Shahid Bashiru, Hameed Akande Basso, João Diogo Bastan, Mohammad-Mahdi Basu, Sanjay Batra, Kavita Bauckneht, Matteo Baune, Bernhard T. Beghi, Massimiliano Beiranvand, Maryam Béjot, Yannick Bell, Michelle L. Bello, Olorunjuwon Omolaja Belo, Luis Beloukas, Apostolos Beneke, Alice A. Bettencourt, Paulo J.G. Bhagavathula, Akshaya Srikanth Bhala, Neeraj Bhaskar, Sonu Bisulli, Francesca Bjørge, Tone Bodunrin, Aadam Olalekan Carvajal, Alejandro Botero Bouaoud, Souad Brayne, Carol Brenner, H Department of Primary Care and Public Health University of East Anglia Norwich United Kingdom Office for Health Improvement and Disparities Department of Health and Social Care London United Kingdom Department of Legal and Economic Studies La Sapienza University Rome Italy Rome Italy Hull York Medical School University of Hull Hull United Kingdom Department of Mathematics and Sciences Ajman University Ajman United Arab Emirates Department of Medicine Memorial University St. John's NL Canada Postgraduate Department University of Sierra Sur Miahuatlan de Porfirio Diaz Mexico Yhteiskuntadatatieteen keskus (Centre for Social Data Science) Helsinki Finland Department of Internal Medicine Federal Medical Centre Abuja Nigeria Research Center for Immunodeficiencies Tehran University of Medical Sciences Tehran Iran Department of Medical Biochemistry and Biophysics Karolinska Institutet (Karolinska Institute) Stockholm Sweden Department of Clinical Sciences University of Sharjah Sharjah United Arab Emirates Department of Biopharmaceutics and Clinical Pharmacy University of Jordan Amman Jordan Medical Research Center Hamad Medical Corporation Doha Qatar Department of Biochemistry and Molecular Medicine Alfaisal University Riyadh Saudi Arabia College of Graduate Health Sciences University of Tennessee Memphis TN United States School of Medicine Sydney NSW Australia Centre for Social Research in Health University of New South Wales Sydney NSW Australia Internal Medicine and Alcohol Related Disease Unit Fondazione Policlinico Universitario A. Gemelli IRCCS Rome Italy Department of Medical and Surgical Sciences Università Cattolica di Roma (Catholic University of Rome) Rome Italy Department of Obstetrics and Gynecology University of Texas Medical Branch Galveston TX United States Department of Biochemistry Osun State University Osogbo Nigeria Department of Pharmacology and Therapeutics University of Medical Sciences Ondo Ondo Nigeria Department of Veteri

Background: Decades of steady improvements in life expectancy in Europe slowed down from around 2011, well before the COVID-19 pandemic, for reasons which remain disputed. We aimed to assess how changes in risk factors and cause-specific death rates in different European countries related to changes in life expectancy in those countries before and during the COVID-19 pandemic. Methods: We used data and methods from the Global Burden of Diseases, Injuries, and Risk Factors Study 2021 to compare changes in life expectancy at birth, causes of death, and population exposure to risk factors in 16 European Economic Area countries (Austria, Belgium, Denmark, Finland, France, Germany, Greece, Iceland, Ireland, Italy, Luxembourg, the Netherlands, Norway, Portugal, Spain, and Sweden) and the four UK nations (England, Northern Ireland, Scotland, and Wales) for three time periods: 1990–2011, 2011–19, and 2019–21. Changes in life expectancy and causes of death were estimated with an established life expectancy cause-specific decomposition method, and compared with summary exposure values of risk factors for the major causes of death influencing life expectancy. Findings: All countries showed mean annual improvements in life expectancy in both 1990–2011 (overall mean 0·23 years [95% uncertainty interval [UI] 0·23 to 0·24]) and 2011–19 (overall mean 0·15 years [0·13 to 0·16]). The rate of improvement was lower in 2011–19 than in 1990–2011 in all countries except for Norway, where the mean annual increase in life expectancy rose from 0·21 years (95% UI 0·20 to 0·22) in 1990–2011 to 0·23 years (0·21 to 0·26) in 2011–19 (difference of 0·03 years). In other countries, the difference in mean annual improvement between these periods ranged from –0·01 years in Iceland (0·19 years [95% UI 0·16 to 0·21] vs 0·18 years [0·09 to 0·26]), to –0·18 years in England (0·25 years [0·24 to 0·25] vs 0·07 years [0·06 to 0·08]). In 2019–21, there was an overall decrease in mean annual life expectancy a

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Biomedical image analysis competitions: The state of current participation practice

arXiv

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arXiv 2022年

作者： Eisenmann, Matthias Reinke, Annika Weru, Vivienn Tizabi, Minu Dietlinde Isensee, Fabian Adler, Tim J. Godau, Patrick Cheplygina, Veronika Kozubek, Michal Maier-Hein, Klaus Jäger, Paul F. Kopp-Schneider, Annette Maier-Hein, Lena Ali, Sharib Gupta, Anubha Kybic, Jan Noble, Alison de Solórzano, Carlos Ortiz Pachade, Samiksha Petitjean, Caroline Sage, Daniel Wei, Donglai Wilden, Elizabeth Alapatt, Deepak Andrearczyk, Vincent Baid, Ujjwal Bakas, Spyridon Balu, Niranjan Bano, Sophia Bawa, Vivek Singh Bernal, Jorge Bodenstedt, Sebastian Casella, Alessandro Choi, Jinwook Commowick, Olivier Daum, Marie Depeursinge, Adrien Dorent, Reuben Egger, Jan Eichhorn, Hannah Engelhardt, Sandy Ganz, Melanie Girard, Gabriel Hansen, Lasse Heinrich, Mattias Heller, Nicholas Hering, Alessa Huaulmé, Arnaud Kim, Hyunjeong Li, Hongwei Bran Landman, Bennett Li, Jianning Ma, Jun Martel, Anne Martín-Isla, Carlos Menze, Bjoern Nwoye, Chinedu Innocent Oreiller, Valentin Padoy, Nicolas Pati, Sarthak Payette, Kelly Sudre, Carole van Wijnen, Kimberlin Vardazaryan, Armine Vercauteren, Tom Wagner, Martin Wang, Chuanbo Yap, Moi Hoon Yu, Zeyun Yuan, Chun Zenk, Maximilian Zia, Aneeq Zimmerer, David Bao, Rina Choi, Chanyeol Cohen, Andrew Dzyubachyk, Oleh Galdran, Adrian Gan, Tianyuan Guo, Tianqi Gupta, Pradyumna Haithami, Mahmood Ho, Edward Jang, Ikbeom Li, Zhili Luo, Zhengbo Lux, Filip Makrogiannis, Sokratis Müller, Dominik Oh, Young-Tack Pang, Subeen Pape, Constantin Polat, Gorkem Reed, Charlotte Rosalie Ryu, Kanghyun Scherr, Tim Thambawita, Vajira Wang, Haoyu Wang, Xinliang Xu, Kele Yeh, Hung Yeo, Doyeob Yuan, Yixuan Zeng, Yan Zhao, Xin Abbing, Julian Adam, Jannes Adluru, Nagesh Agethen, Niklas Ahmed, Salman Al Khalil, Yasmina Alenyà, Mireia Alhoniemi, Esa An, Chengyang Arega, Tewodros Weldebirhan Avisdris, Netanell Aydogan, Dogu Baran Bai, Yingbin Calisto, Maria Baldeon Basaran, Berke Doga Beetz, Marcel Bian, Hao Blansit, Kevin Bloch, Louise Bohnsack, Robert Bosticardo, Sara Breen, Jack Brudfors, Mikael Brüngel, Raphael Cabezas, Mariano Cacciola, Alb Heidelberg Division of Intelligent Medical Systems Germany Heidelberg HI Helmholtz Imaging Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Heidelberg Division of Biostatistics Germany Heidelberg Division of Medical Image Computing Germany Heidelberg HI Applied Vision Lab Germany IT University of Copenhagen Copenhagen Denmark Centre for Biomedical Image Analysis Masaryk University Brno Czech Republic Heidelberg Interactive Machine Learning Group Germany Faculty of Mathematics and Computer Science and Medical Faculty Heidelberg University Heidelberg Germany NCT Heidelberg DKFZ University Hospital Heidelberg Germany School of Computing University of Leeds Leeds United Kingdom SBILab Department of ECE IIIT-Delhi India Faculty of Electrical Engineering Czech Technical University Prague Czech Republic Institute of Biomedical Engineering University of Oxford United Kingdom Center for Applied Medical Research Pamplona Spain Shri Guru Gobind Singhji Institute of Engineering and Technology Maharashtra Nanded India Université de Rouen Normandie France Lausanne Switzerland School of Engineering and Applied Science Harvard University United States ICube University of Strasbourg CNRS France Institute of Informatics School of Management HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland Techno-Pôle 3 Sierre3960 Switzerland Department of Nuclear Medicine and Molecular Imaging Lausanne University Hospital Rue du Bugnon 46 LausanneCH-1011 Switzerland University of Pennsylvania PhiladelphiaPA United States Department of Radiology University of Washington United States Wellcome EPSRC Centre for Interventional and Surgical Sciences University College London London United Kingdom Visual Artificial Intelligence Lab Oxford Brookes University Oxford United Kingdom Universitat Autònoma de Barcelona & Computer Vision Center Spain Dresden Fetscherstraße 74 PF 64 Dresden01307 Germany

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps. © 2022, CC BY.

关键词： Benchmarking

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Harmonized-Multinational qEEG norms (HarMNqEEG)

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NEUROIMAGE 2022年 256卷 119190-119190页

作者： Li, Min Wang, Ying Lopez-Naranjo, Carlos Hu, Shiang Reyes, Ronaldo Cesar Garcia Paz-Linares, Deirel Areces-Gonzalez, Ariosky Hamid, Aini Ismafairus Abd Evans, Alan C. Savostyanov, Alexander N. Calzada-Reyes, Ana Villringer, Arno Tobon-Quintero, Carlos A. Garcia-Agustin, Daysi Yao, Dezhong Dong, Li Aubert-Vazquez, Eduardo Reza, Faruque Razzaq, Fuleah Abdul Omar, Hazim Abdullah, Jafri Malin Galler, Janina R. Ochoa-Gomez, John F. Prichep, Leslie S. Galan-Garcia, Lidice Morales-Chacon, Lilia Valdes-Sosa, Mitchell J. Trondle, Marius Zulkifly, Mohd Faizal Mohd Rahman, Muhammad Riddha Bin Abdul Milakhina, Natalya S. Langer, Nicolas Rudych, Pavel Koenig, Thomas Virues-Alba, Trinidad A. Lei, Xu Bringas-Vega, Maria L. Bosch-Bayard, Jorge F. Valdes-Sosa, Pedro Antonio [a]The Clinical Hospital of Chengdu Brain Science Institute MOE Key Lab for Neuroinformation School of Life Science and Technology University of Electronic Science and Technology of China Chengdu China [b]Cuban Center for Neurocience La Habana Cuba [c]McGill Centre for Integrative Neuroscience Ludmer Centre for Neuroinformatics and Mental Health Montreal Neurological Institute Canada [d]Department of Neurosciences School of Medical Sciences Universiti Sains Malaysia Universiti Sains Malaysia Health Campus Kota Bharu Kelantan 16150 Malaysia [e]Brain and Behaviour Cluster School of Medical Sciences Universiti Sains Malaysia Health Campus Kota Bharu Kelantan 16150 Malaysia [f]Hospital Universiti Sains Malaysia Universiti Sains Malaysia Health Campus Kota Bharu Kelantan 16150 Malaysia [g]Humanitarian Institute Novosibirsk State University Novosibirsk 630090 Russia [h]Laboratory of Psychophysiology of Individual Differences Federal State Budgetary Scientific Institution Scientific Research Institute of Neurosciences and Medicine Novosibirsk 630117 Russia [i]Laboratory of Psychological Genetics at the Institute of Cytology and Genetics Siberian Branch of the Russian Academy of Sciences Novosibirsk 630090 Russia [j]University of Pinar del Río “Hermanos Saiz Montes de Oca” Pinar del Río Cuba [k]Department of Neurology Max Planck Institute for Human Cognitive and Brain Sciences Leipzig Germany [l]Department of Cognitive Neurology University Hospital Leipzig Leipzig Germany [m]Center for Stroke Research Charité-Universitätsmedizin Berlin Berlin Germany [n]Grupo Neuropsicología y Conducta - GRUNECO Faculty of Medicine Universidad de Antioquia Colombia [o]Research Department Institución Prestadora de Servicios de Salud IPS Universitaria Colombia [p]The Cuban center aging longevity and health Havana Cuba [q]Research Unit of NeuroInformation Chinese Academy of Medical Sciences Chengdu 2019RU035 China [r]School of Electrical Engineering Zhengzhou University Zhengzhou 4500

This paper extends frequency domain quantitative electroencephalography (qEEG) methods pursuing higher sensitivity to detect Brain Developmental Disorders. Prior qEEG work lacked integration of cross-spectral information omitting important functional connectivity descriptors. Lack of geographical diversity precluded accounting for site-specific variance, increasing qEEG nuisance variance. We ameliorate these weaknesses. (i) Create lifespan Riemannian multinational qEEG norms for cross-spectral tensors. These norms result from the HarMNqEEG project fostered by the Global Brain Consortium. We calculate the norms with data from 9 countries, 12 devices, and 14 studies, including 1564 subjects. Instead of raw data, only anonymized metadata and EEG cross spectral tensors were shared. After visual and automatic quality control, developmental equations for the mean and standard deviation of qEEG traditional and Riemannian DPs were calculated using additive mixed-effects models. We demonstrate qEEG "batch effects " and provide methods to calculate harmonized z-scores. (ii) We also show that harmonized Riemannian norms produce z-scores with increased diagnostic accuracy predicting brain dysfunction produced by malnutrition in the first year of life and detecting COVID induced brain dysfunction. (iii) We offer open code and data to calculate different individual z-scores from the HarMNqEEG dataset. These results contribute to developing bias-free, low-cost neuroimaging technologies applicable in various health settings.

关键词： Quantitative EEG EEG cross-spectrum Riemannian geometry Batch effects Z-score Harmonization Malnutrition Covid induced brain dysfunction Developmental Brain Chart

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