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Proceedings of the 2025 5th International Conference on Bioinformatics and Intelligent Computing

作者： Ying Zhang Yuan Liu Xiaoyong Pan Hongbin Shen Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai China

ISBN: (纸本)9798400712203

Protein-Protein Interaction (PPI) provides important insights into the metabolic mechanisms of different biological processes. Although PPIs in some organisms have been investigated systematically, PPIs in the ocean archaea remain largely unexplored. But such species have special investigation value since their adaptation to extreme living conditions may generate unique PPIs. In this paper, we aim to characterize and predict PPIs in ocean archaea to advance understanding of their metabolic networks. First, we collect all ocean archaea PPIs with high confidence from STRING database and analyze the PPI network features, including centrality and enrichment analysis. The functional enrichment results of the largest connecting subgraph in the PPI network show most PPIs in our constructed dataset is related to the translation and transcription processes. Then, we generate an equal number of negative PPI pairs, whose members have either different subcellular locations or GO terms. We also use the generated dataset to test the performance of three pretraining methods and their ensemble methods in the binary PPI prediction task. Our results suggest the ensemble methods could be applied to further improve models’ performance. Fine-tuned models trained on the ocean archaea dataset are expected to predict the other ocean archaea PPIs that are not included in the STRING database and get more understanding about the ocean archaea PPI universe.

关键词： Binary PPI prediction

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Tissue P Systems with Look-Ahead Mode

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Chinese Journal of Electronics 2025年第1期23卷 81-86页

作者： Yun Jiang Tao Song Zheng Zhang School of Computer Science and Information Engineering Chongqing Technology and Business University Chongqing China Department of Control Science and Engineering Image Processing and Intelligent Control Key Laboratory of Education Ministry of China Huazhong University of Science and Technology Wuhan China

Tissue P systems are a class of distributed and parallel computing models inspired from inter-cellular communication and cooperation between cells. In this work, a variant of tissue P system, named tissue P system with look-ahead mode, is discussed for decreasing the inherent non-determinism of tissue P systems and helping implementing tissue P systems on computers. Such systems are proved to be universal by simulating register machine, and they are also proved to be able to efficiently solve computationally hard problems by means of a space-time tradeoff, which is illustrated with a polynomial solution to 3-coloring problem.

关键词： Computers Computational modeling Medical services Parallel processing Polynomials Computational efficiency Registers Business

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Memristor-Based Circuit of Sequential Associative Memory with Memory Interactions and Stimulus Similarity Effect

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IEEE Transactions on Cognitive and Developmental Systems 2025年

作者： Xiong, Dongdong Wang, Xiaoping Jiang, Yiming Yang, Chao Jiang, Man Lai, Jingang Zeng, Zhigang Huazhong University of Science and Technology School of Artificial Intelligence and Automation Wuhan430074 China Key Laboratory of Image Processing and Intelligent Control of Education Ministry of China Wuhan430074 China Hubei Key Laboratory of Braininspired Intelligent Systems Wuhan430074 China Huazhong University of Science and Technology Institute of Artificial Intelligence School of Artificial Intelligence and Automation Key Laboratory of Image Processing and Intelligent Control of Education Ministry of China Wuhan430074 China Guangxi University of Science and Technology School of Computer Science and Technology Liuzhou545006 China Huazhong University of Science and Technology Department of Physiology School of Basic Medicine and Tongji Medical College Wuhan430030 China

Most proposed memristor-based circuits of associative memory consider various mechanisms in only one associative memory. Few works on circuit design of sequential associative memory have been reported. In this paper, a memristor-based circuit of sequential associative memory with memory interactions and stimulus similarity effect is designed. Two associative memories, the prior associative memory (PAM) and the later associative memory (LAM), are formed successively. The PAM modifies the rate of the formation of the LAM, and the LAM, in turn, affects the strength of the PAM, which are two interactions in sequential associative memory, called transfer and retroaction. In addition, the magnitudes of transfer and retroaction are determined by the similarity of the conditioned stimuli. The above functions are realized by the ring input processing module, memory module, transfer module and retroaction module. It has been identified in circuit analysis that the proposed circuit is power efficient and has good robustness. Furthermore, the proposed circuit has promising applications for fire rescue robots. © 2016 IEEE.

关键词： Associative storage

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An Integrated Intelligent Autonomous Driving Bulldozer System: Pose Estimation, Object Detection, and Work Planning for Dumping Operations

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Journal of Field Robotics 2025年第0期

作者： Peng, Gang Gao, Qiang Liu, Xingyu Zhou, Yicheng Duan, Hangqi Wu, ZhanGang Hu, Bin Zhu, Xukang Xu, Daosheng School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China Key Laboratory of Image Processing and Intelligent Control Ministry of Education Wuhan China Engineering Research Center of Autonomous Intelligent Unmanned Systems Ministry of Education Wuhan China Shantui Construction Machinery Co. Ltd. Jining China

In recent years, the rapid advancement of automation control and intelligent sensing technologies has positioned autonomous driving as a focal point of interest for both academia and industry. As core equipment in modern construction and industrial production, engineering machinery urgently requires intelligent transformation. To promote the intelligent development of engineering machinery, we have designed an integrated intelligent autonomous driving bulldozer system, which can be extended to various types of engineering machinery. For the specific mine dumping operation environment, we propose a multisensor fusion pose estimation algorithm framework based on the Global Navigation Satellite System, inertial measurement unit, visual cameras, and light detection and ranging (LiDAR) to address issues arising from sensor failures under harsh construction conditions. Furthermore, to ensure safety during task execution, we design a three-dimensional object detection method based on the optimal observation plane from LiDAR data. By integrating pose estimation and environmental perception results, we develop a comprehensive work planning and path-tracking algorithm to maintain task efficiency. Experimental results demonstrate that our intelligent autonomous driving bulldozer system performs excellently under various working conditions. The accuracy of its pose estimation, object detection, and path tracking meets the requirements of actual construction environments, showcasing its significant potential in engineering applications. © 2025 Wiley Periodicals LLC.

关键词： Construction equipment

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Event-triggered Nonlinear control with Reset Dynamics

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IEEE Transactions on Automatic control 2025年

作者： Zhu, Lijun Chen, Zhiyong The Ministry of Education Key Laboratory of Imaging Processing and Intelligence Control China Huazhong University of Science and Technology School of Artificial Intelligence and Automation Wuhan430074 China The University of Newcastle School of Engineering CallaghanNSW2308 Australia

In this paper, we propose an improved event-triggered control law based on Lyapunov function method for a class of nonlinear systems by integrating a monotonically decreasing dynamics with a reset mechanism at each sampling instance. It is rigorously guaranteed that the sampling interval can be increased compared to a recently designed Lyapunov-function based event-triggered control law when adopted at each step while the advantages compared with other existing event-triggered control laws are maintained. Then, the improved event-triggered law is applied in the adaptive control scheme. Finally, it is verified by numerical examples that the sampling efficiency is improved when the design parameter is appropriately chosen. © 1963-2012 IEEE.

关键词： Lyapunov functions

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Spatial Distillation based Distribution Alignment (SDDA) for Cross-Headset EEG Classification

arXiv

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arXiv 2025年

作者： Liu, Dingkun Li, Siyang Wang, Ziwei Li, Wei Wu, Dongrui Ministry of Education Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China Shenzhen Huazhong University of Science and Technology Research Institute Shenzhen518000 China

A non-invasive brain-computer interface (BCI) enables direct interaction between the user and external devices, typically via electroencephalogram (EEG) signals. However, decoding EEG signals across different headsets remains a significant challenge due to differences in the number and locations of the electrodes. To address this challenge, we propose a spatial distillation based distribution alignment (SDDA) approach for heterogeneous cross-headset transfer in non-invasive BCIs. SDDA uses first spatial distillation to make use of the full set of electrodes, and then input/feature/output space distribution alignments to cope with the significant differences between the source and target domains. To our knowledge, this is the first work to use knowledge distillation in cross-headset transfers. Extensive experiments on six EEG datasets from two BCI paradigms demonstrated that SDDA achieved superior performance in both offline unsupervised domain adaptation and online supervised domain adaptation scenarios, consistently outperforming 10 classical and state-of-the-art transfer learning algorithms. Copyright © 2025, The Authors. All rights reserved.

关键词： Transfer learning

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Multi-View Contrastive Network (MVCNet) for Motor imagery Classification

arXiv

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arXiv 2025年

作者： Wang, Ziwei Li, Siyang Chen, Xiaoqing Li, Wei Wu, Dongrui Ministry of Education Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China Shenzhen Huazhong University of Science and Technology Research Institute Shenzhen518000 China

Objective: An electroencephalography (EEG)-based brain-computer interface (BCI) serves as a direct communication pathway between the human brain and an external device. While supervised learning has been extensively explored for motor imagery (MI) EEG classification, small data quantity has been a key factor limiting the performance of deep feature learning. Methods: This paper proposes a knowledge-driven time-space-frequency based multi-view contrastive network (MVCNet) for MI EEG decoding in BCIs. MVCNet integrates knowledge from the time, space, and frequency domains into the training process through data augmentations from multiple views, fostering more discriminative feature learning of the characteristics of EEG data. We introduce a cross-view contrasting module to learn from different augmented views and a cross-model contrasting module to enhance the consistency of features extracted between knowledge-guided and data-driven models. Results: The combination of EEG data augmentation strategies was systematically investigated for more informative supervised contrastive learning. Experiments on four public MI datasets and three different architectures demonstrated that MVCNet outperformed 10 existing approaches. Significance: Our approach can significantly boost EEG classification performance beyond designated networks, showcasing the potential to enhance the feature learning process for better EEG decoding. Copyright © 2025, The Authors. All rights reserved.

关键词： Contrastive Learning

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Transfer learning with a spatiotemporal graph convolution network for city flowprediction

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Frontiers of Information Technology & Electronic Engineering 2025年第1期26卷 79-92页

作者： Binkun LIU Yu KANG Yang CAO Yunbo ZHAO Zhenyi XU Department of Automation University of Science and Technology of ChinaHefei 230026China Key Laboratory of System Control and Information Processing Ministry of EducationShanghai 200240China Institute of Artificial Intelligence Hefei Comprehensive National Science CenterHefei 230088China Institute of Advanced Technology University of Science and Technology of ChinaHefei 230088China

Recently,deep learning based city flow prediction has been extensively used in the establishment of *** methods are data-hungry,making them unscalable to areas lacking *** transfer learningcan use data-rich source domains to assist target domain cities in city flow prediction,the performance of existingmethods cannot meet the needs of actual use,because the long-distance road network connectivity is *** this problem,we propose a transfer learning method based on spatiotemporal graph convolution,in which weconstruct a co-occurrence space between the source and target domains,and then align the mapping of the sourceand target domains’data in this space,to achieve the transfer learning of the source city flow prediction modelon the target ***,a dynamic spatiotemporal graph convolution module along with a temporalencoder is devised to simultaneously capture the concurrent spatiotemporal features,which implies the inherentrelationship among the road network structures,human travel habits,and city bike ***,these concurrentfeatures are leveraged as cross-city invariant representations and nonlinearly spanned to a co-occurrence *** domain features are thereby aligned with the source domain features in the co-occurrence space by using aMahalanobis distance loss,to achieve cross-city bike flow *** proposed method is evaluated on the publicbike flow datasets in Chicago,New York,and Washington in 2015,and significantly outperforms state-of-the-arttechniques.

关键词： Transfer learning City flow prediction Spatiotemporal graph convolution

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Multimodal Brain-Computer Interfaces: AI-powered Decoding Methodologies

arXiv

引用

arXiv 2025年

作者： Li, Siyang Wang, Hongbin Chen, Xiaoqing Wu, Dongrui The Ministry of Education Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China The Henan Key Laboratory of Brain Science and Brain Computer Interface Technology School of Electrical and Information Engineering Zhengzhou University China

Brain-computer interfaces (BCIs) enable direct communication between the brain and external devices. This review highlights the core decoding algorithms that enable multimodal BCIs, including a dissection of the elements, a unified view of diversified approaches, and a comprehensive analysis of the present state of the field. We emphasize algorithmic advancements in cross-modality mapping, sequential modeling, besides classic multi-modality fusion, illustrating how these novel AI approaches enhance decoding of brain data. The current literature of BCI applications on visual, speech, and affective decoding are comprehensively explored. Looking forward, we draw attention on the impact of emerging architectures like multimodal Transformers, and discuss challenges such as brain data heterogeneity and common errors. This review also serves as a bridge in this interdisciplinary field for experts with neuroscience background and experts that study AI, aiming to provide a comprehensive understanding for AI-powered multimodal BCIs. © 2025, CC BY-NC-ND.

关键词： Brain computer interface

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Secure Consensus of Multi-agent Systems via Fully Distributed Dynamic Edge-based Event Triggered Under Denial-of-service Attacks

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International Journal of control, Automation and Systems 2025年第5期23卷 1337-1355页

作者： Li, Lei Liu, Lei Yan, Dongmei Liang, Chengqing School of Mathematics Hohai University Nanjing China Key Laboratory of System Control and Information Processing Ministry of Education Shanghai China School of Modern Posts Nanjing University of Posts and Telecommunications Nanjing China College of Artificial Intelligence and Automation Hohai University Changzhou China Key Laboratory of Maritime Intelligent Cyberspace Technology Hohai University Ministry of Education Nanjing China

This paper addresses the issue of ensuring secure consensus in linear multi-agent systems under Denial-of-Service attacks. At the outset, to address the issue of partially observable agent states, a state observer is engineered to offer state estimations for the agents. Using the capabilities of this observer, a novel fully distributed dynamic adaptive edge-based event triggered control mechanism is introduced, and a timing variable is utilized to ensure that the inter-event intervals for all communication links in the network are strictly positive, thereby excluding Zeno behavior. Following that, by leveraging the piecewise Lyapunov function approach, the necessary conditions are meticulously crafted to ensure that the system reaches a secure consensus, thereby establishing a quantitative link between control gains, the duration of attacks, and their frequencies. Ultimately, the effectiveness of the developed event-triggered control strategy is validated through a simulation example.

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