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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Xiao Wang Guo-Zheng Li Jia-Ming Liu Rui-Wei Zhao The Key Laboratory of Embedded System and Service Computing Ministry of Education Department of Control Science and Engineering Tongji University Shanghai China

Protein subcellular localization aims at predicting the location of a protein within a cell using computational methods. Knowledge of subcellular localization of proteins indicates protein functions and helps in identifying drug targets. Prediction of protein subcellular localization is an important but challenging problem, particularly when proteins may simultaneously exist at, or move between, two or more different subcellular location sites. Most of the existing protein subcellular localization methods are only used to deal with the single-location proteins. To better reflect the characteristics of multiplex proteins, we formulate prediction of subcellular localization of multiplex proteins as a multi-label learning problem. We present and compare two multi-label learning approaches, which exploit correlations between labels and leverage label-specific features, respectively, to induce a high quality prediction model. Experimental results on six protein data sets under various organisms show that our described methods achieve significantly higher performance than any of the existing methods. Among the different multi-label learning methods, we find that methods exploiting label correlations performs better than those leveraging label-specific features.

关键词： Proteins Correlation Protein engineering Multiplexing Machine learning Humans Learning systems

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A New MPI Parallel computing Environment Based on Fibre-channel Token-Routing Network for Materials Simulation Research

A New MPI Parallel Computing Environment Based on Fibre-chan...

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2011 International Conference on Advanced Materials in Microwaves and Optics（AMMO 2011）

作者： Xiaohui ZENG Dongsheng LIU Wenlang LUO Lixin FU school of Electronics and Information Engineering Jinggangshan University The Key Laboratory of Embedded System and Service Computing Ministry of EducationTongji University

In order to apply our high efficiency fibre-channel token-routing network(shortened as FC-TR network) to the field of materials simulation research, a new MPI parallel computing environment is proposed and designed, and independently developed a parallel programming environment FC-TR-MPI based on FC-TR network. In FC-TR-MPI, a new method was applied to point-to-point communication that the network communications between processes in the same computing node were changed into memory operations;moreover, according to the underlying software and hardware features of FC-TR network, new algorithms were proposed to optimize the communication performance of some collective communications. Experimental results show that, compared with Sca MPI parallel programming environment, FC-TR-MPI has a higher parallel efficiency and speedup.

关键词： MPI,parallel computing environment,fibre-channel,materials simulation

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Designing and Analysis of a New Book-Lending system Based on Logic Petri Nets

Designing and Analysis of a New Book-Lending System Based on...

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International Conference on Electric Information and Control Engineering

作者： Xia Jiang WenJing Luan Department of Computer Laiwu Vocational and Technical College The Key Laboratory of Embedded System and Service Computing Ministry of Education Tongji University

A new book-lending system is designed and analyzed based on logic Petri nets in this paper. The batch processing function and indeterminacy of readers are included in the system. Its logic Petri net model is establish... 详细信息

ISBN: (纸本)9781424480364

关键词： Book-lending system Batch processing Designing Verification Logic Petri net

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Block diagonal precoding based power allocation for coordinated multi-point transmission

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Journal of Communications 2011年第7期6卷 524-528页

作者： Han, Jing Wang, Ping Liu, Fuqiang Zhu, Yin Broadband Wireless Communications and Multimedia Laboratory Key Laboratory of Embedded System and Service Computing Ministry of Education Tongji University Shanghai China Shanghai Key Laboratory of Digital Media Processing and Transmission Shanghai China

This paper studies power allocation in coordinated multi-point (CoMP) transmission of 3GPP LTE-Advanced system with remote radio units(RRUs) power constraints. We apply block diagonal (BD) precoding to downlink transmission, and assume perfect knowledge of downlink channels and transmit messages at each transmit point. We propose a modified water-filling power (MWF) allocation algorithm in order to maximize the downlink sum capacity, at the same time the low complexity is achieved. The interior-point method is also used to solve the optimization problem. Simulations show that interior-point method converges after only a few iterative steps and the system capacity is near-optimal. As for complexity and power efficiency, MWF achieves a good compromise. © 2011 ACADEMY PUBLISHER.

关键词： Iterative methods

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Research on a Remote Network Monitoring Model for Large-scale Materials Manufacturing

Research on a Remote Network Monitoring Model for Large-scal...

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2011 International Conference on Advanced Materials and Computer Science(ICAMCS 2011)

作者： Xiaohui ZENG Manhua LI Wenlang LUO Department of Computer Science and Technology Jinggangshan University The Key Laboratory of Embedded System and Service Computing Ministry of EducationTongji University

A remote network monitoring model for large-scale materials manufacturing is proposed, including five modules: center control module, data collection and fault alarm module, graph drawing module and data storage module. The center control module not only interacts with users, but also controls the other four modules to work together in harmony. According to this monitoring model, a remote network monitoring platform is designed and realized. The user can interact with the control center module through an Internet browser, and the information about the monitored manufacturing machines and devices can be displayed by means of text, chart, graphic and sound, etc. Moreover, the details about the problems or faults from the monitored objects can be obtained in time. The experimental results indicate that the network monitoring platform can accurately get the information of the monitored objects, and users can conveniently get the online running state of those monitored objects.

关键词： remote network monitoring data storage fault alarm materials manufacturing

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SelectCast: Scalable data aggregation scheme in wireless sensor networks

SelectCast: Scalable data aggregation scheme in wireless sen...

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IEEE INFOCOM 2011

作者： Wang, Cheng Tang, Shaojie Li, Xiang-Yang Jiang, Changjun Department of Computer Science Tongji University Shanghai China Key Laboratory of Embedded System and Service Computing Ministry of Education Shanghai China Department of Computer Science Illinois Institute of Technology Chicago IL 60616 United States TNLIST School of Software Tsinghua University China

ISBN: (纸本)9781424499212

In this work, for a wireless sensor network (WSN) of n randomly placed sensors with node density λ ∈ [1, n], we study the tradeoffs between the aggregation throughput and gathering efficiency. The gathering efficiency refers to the ratio of the number of the sensors whose data have been gathered to the total number of sensors. Specifically, we design two efficient aggregation schemes, called single-hop-length (SLH) scheme and multiple-hop-length (MLH) scheme. By novelly integrating these two schemes, we theoretically prove that our protocol achieves the optimal tradeoffs, and derive the optimal aggregation throughput depending on a given threshold value (lower bound) on gathering efficiency. Particularly, we show that under the MLH scheme, for a practically important set of symmetric functions called perfectly compressible functions, including the mean, max, or various kinds of indicator functions, etc., the data from Θ(n) sensors can be aggregated to the sink at the throughput of a constant order Θ(1), implying that our MLH scheme is indeed scalable. © 2011 IEEE.

关键词： Efficiency

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An algorithm for generating home states of Petri nets

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Journal of Computational Information systems 2011年第12期7卷 4225-4232页

作者： Wang, Pengwei Ding, Zhijun Chai, Hua Key Laboratory of Embedded System and Service Computing Ministry of Education Shanghai 200092 China Department of Computer Science and Technology Tongji University Shanghai 201804 China

Home states are ground markings which can be reached from any other reachable markings of a Petri net. The existence of home states is a strong property, and it is not only of important theoretical research meaning, but also of great practical value. This paper presents an algorithm for generating home states. For any bounded Petri net, the algorithm can judge whether it contains home states or not, and obtain the set of all its home states. The correctness of the algorithm is proved, and its complexity is analyzed, the result shows that it is a polynomial-time algorithm, so it is effective. Meanwhile, we implemented the algorithm in the popular Petri net tool PIPE2, which can be used for experimental purposes. Then a number of conclusions about the relationships between home state and deadlock are given, which bring great convenience to judge deadlock and exert control pointedly. Copyright © 2011 Binary Information Press.

关键词： Petri nets

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Intelligent mobile messaging

Intelligent mobile messaging

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2011 8th International Conference on Fuzzy systems and Knowledge Discovery, FSKD 2011, Jointly with the 2011 7th International Conference on Natural Computation, ICNC'11

作者： Al-Sultany, Ghaidaa Li, Maozhen Jan, Sadaqat Al-Raweshidy, Hamed School of Engineering and Design Brunel University Uxbridge Middlesex UB8 3PH United Kingdom Key Laboratory of Embedded Systems and Service Computing Ministry of Education Tongji University China

ISBN: (纸本)9781612841816

Pervasive computing paradigm's goal is to visualize an ambient smart world via integration of devices into the users in their environment intelligently. Specifically, context aware computing is emerging as one of trails to achieve this paradigm in which services are seamlessly available at right time, right place and with right situation. This paper presents SOIM framework, which facilitates users to publish, annotate and retrieve service queries that are published to cloud. SOIM framework is built on semantic web technologies in support of query action retrieval automatically on low-end mobile devices. A generic ontology is developed which defines a number of keywords, and properties based on semantic reasoning. © 2011 IEEE.

关键词： Ontology

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Ontology alignment using Rough Sets

Ontology alignment using Rough Sets

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2011 8th International Conference on Fuzzy systems and Knowledge Discovery, FSKD 2011, Jointly with the 2011 7th International Conference on Natural Computation, ICNC'11

作者： Jan, Sadaqat Li, Maozhen Al-Sultany, Ghaidaa Al-Raweshidy, Hamed School of Engineering and Design Brunel University Uxbridge Middlesex UB8 3PH United Kingdom Key Laboratory of Embedded Systems and Service Computing Ministry of Education Tongji University China

ISBN: (纸本)9781612841816

Ontology alignment has been one of the most significant research issues to bridge the semantic gap between heterogeneous systems toward Semantic Web. Many proposed systems in recent years, use multiple similarity measures and variety of aggregating algorithms to map entities from two different ontologies. However, the real issue arises when alignment systems turn out to be uncertain about entities which are neither completely similar nor dissimilar. This paper presents an ontology alignment system which uses a combination of various similarity measures in order to map entities from two different ontologies. Rough Sets have been used to deal with uncertainties during the mapping process by defining the similarity measures as the attributes of entities. The proposed alignment system employs the combination of string based, linguistic based and structural matchers. The structural matcher compares the super-classes, sub-classes and properties of two class entities. We use WordNet to compare the linguistic similarity between entities in the mapping process. The performance of proposed system is evaluated in terms of precision and recall and compared with existing state of the art alignment systems. For this purpose, the Ontology Alignment Evaluation Initiative (OAEI) benchmark group-3 test ontologies have been used. Experimental tests show that the performance our proposed alignment system is comparable with existing alignment systems. © 2011 IEEE.

关键词： Ontology

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Parallelizing multiclass Support Vector Machines for scalable image annotation

Parallelizing multiclass Support Vector Machines for scalabl...

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2011 8th International Conference on Fuzzy systems and Knowledge Discovery, FSKD 2011, Jointly with the 2011 7th International Conference on Natural Computation, ICNC'11

作者： Alham, Nasullah Khalid Li, Maozhen Liu, Yang Hammoud, Suhel School of Engineering and Design Brunel University Uxbridge Middlesex UB8 3PH United Kingdom Key Laboratory of Embedded Systems and Service Computing Ministry of Education Tongji University China

ISBN: (纸本)9781612841816

Machine learning techniques have facilitated image retrieval by automatically classifying and annotating images with keywords. Among them Support Vector Machines (SVMs) are used extensively due to their generalization properties. SVM was initially designed for binary classifications. However, most classification problems arising in domains such as image annotation usually involve more than two classes. Notably SVM training is a computationally intensive process especially when the training dataset is large. This paper presents MRMSVM, a distributed multiclass SVM algorithm for large scale image annotation which partitions the training dataset into smaller binary chunks and train SVM in parallel using a cluster of computers. MRMSVM is evaluated in an experimental environment showing that the distributed Multiclass SVM algorithm reduces the training time significantly while maintaining a high level of accuracy in classifications. © 2011 IEEE.

关键词： MapReduce

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