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arXiv 2021年

作者： Feng, Chun-Mei Yan, Yunlu Yu, Kai Xu, Yong Yang, Jian Shao, Ling Fu, Huazhu The Shenzhen Key Laboratory of Visual Object Detection and Recognition Harbin Institute of Technology Shenzhen518055 China The Institute of High Performance Computing A*STAR Singapore138632 Singapore The PCA Laboratory Key Laboratory of Intelligent Perception and Systems for High-Dimensional Information of Ministry of Education Nanjing University of Science and Technology Nanjing210094 China The Jiangsu Key Laboratory of Image and Video Understanding for Social Security School of Computer Science and Engineering Nanjing University of Science and Technology Nanjing210094 China Terminus Group China

Super-resolving the Magnetic Resonance (MR) image of a target contrast under the guidance of the corresponding auxiliary contrast, which provides additional anatomical information, is a new and effective solution for fast MR imaging. However, current multi-contrast super-resolution (SR) methods tend to concatenate different contrasts directly, ignoring their relationships in different clues, e.g., in the high-intensity and low-intensity regions. In this study, we propose a separable attention network (comprising high-intensity priority attention and low-intensity separation attention), named SANet. Our SANet could explore the areas of high-intensity and low-intensity regions in the "forward" and "reverse" directions with the help of the auxiliary contrast, while learning clearer anatomical structure and edge information for the SR of a target-contrast MR image. SANet provides three appealing benefits: (1) It is the first model to explore a separable attention mechanism that uses the auxiliary contrast to predict the high-intensity and low-intensity regions regions, diverting more attention to refining any uncertain details between these regions and correcting the fine areas in the reconstructed results. (2) A multi-stage integration module is proposed to learn the response of multi-contrast fusion at multiple stages, get the dependency between the fused representations, and boost their representation ability. (3) Extensive experiments with various state-of-the-art multi-contrast SR methods on fastMRI and clinical in vivo datasets demonstrate the superiority of our model. © 2021, CC BY.

关键词： Magnetic resonance imaging

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Dual-View Pyramid Pooling in Deep Neural Networks for Improved Medical Image Classification and Confidence Calibration

arXiv

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arXiv 2024年

作者： Zhang, Xiaoqing Nie, Qiushi Xiao, Zunjie Zhao, Jilu Wu, Xiao Guo, Pengxin Li, Runzhi Liu, Jin Wei, Yanjie Pan, Yi Center for High Performance Computing Shenzhen Key Laboratory of Intelligent Bioinformatics Shenzhen Institute of Advanced Technology Chinese Academy of Sciences Guangdong Shenzhen518055 China Department of Computer Science and Engineering Southern University of Science and Technology Shenzhen518055 China Department of Statistics and Actuarial Science The University of Hong Kong 999077 Hong Kong Cooperative Innovation Center of Internet Healthcare Zhengzhou University Zhengzhou450001 China Hunan Provincial Key Lab on Bioinformatics School of Computer Science and Engineering Central South University Changsha410083 China Xinjiang Engineering Research Center of Big Data and Intelligent Software School of software Xinjiang University Wulumuqi830046 China Faculty of Computer Science and Control Engineering Shenzhen University of Advanced Technology Shenzhen China

Spatial pooling (SP) and cross-channel pooling (CCP) operators have been applied to aggregate spatial features and pixel-wise features from feature maps in deep neural networks (DNNs), respectively. Their main goal is to reduce computation and memory overhead without visibly weakening the performance of DNNs. However, SP often faces the problem of losing the subtle feature representations, while CCP has a high possibility of ignoring salient feature representations, which may lead to both miscalibration of confidence issues and suboptimal medical classification results. To address these problems, we propose a novel dual-view framework, the first to systematically investigate the relative roles of SP and CCP by analyzing the difference between spatial features and pixel-wise features. Based on this framework, we propose a new pooling method, termed dual-view pyramid pooling (DVPP), to aggregate multi-scale dual-view features. DVPP aims to boost both medical image classification and confidence calibration performance by fully leveraging the merits of SP and CCP operators from a dual-axis perspective. Additionally, we discuss how to fulfill DVPP with five parameter-free implementations. Extensive experiments on six 2D/3D medical image classification tasks show that our DVPP surpasses state-of-the-art pooling methods in terms of medical image classification results and confidence calibration across different DNNs. © 2024, CC BY.

关键词： Deep neural networks

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Mining Microbe-disease Interactions From Literature via a Transfer Learning Model

Research Square

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Research Square 2021年

作者： Wu, Chengkun Xiao, Xinyi Yang, Canqun Chen, JinXiang Yi, Jiacai Qiu, Yanlong State Key Laboratory of High-Performance Computing National University of Defense Technology Changsha410073 China College of Computer National University of Defense Technology Changsha410073 China Department of General Surgery Xiangya Hospital Central South University Changsha410008 China

Background: Interactions of microbes and diseases are of great importance for biomedical research. However, large-scale curated databases for microbe-disease interactions are missing, as the amount of related literature is enormous and the curation process is costly and time-consuming. In this paper, we aim to construct a large-scale database for microbe-disease interactions automatically. We attained this goal via applying text mining methods based on a deep learning model with a moderate curation cost. We also built a user-friendly web interface to allow researchers navigate and query desired information. Results: For curation, we manually constructed a golden-standard corpora (GSC) and a sliver-standard corpora (SSC) for microbe-disease interactions. Then we proposed a text mining framework for microbe-disease interaction extraction without having to build a model from scratch. Firstly, we applied named entity recognition (NER) tools to detect microbe and disease mentions from texts. Then we transferred a deep learning model BERE to recognize relations between entities, which was originally built for drug-target interactions or drug-drug interactions. The introduction of SSC for model fine-tuning greatly improves the performance of detection for microbe-disease interactions, with an average reduction in error of approximately 10%. The resulting MDIDB website offers data browsing, custom search for specific diseases or microbes as well as batch download. Conclusions: Evaluation results demonstrate that our method outperform the baseline model (rule-based PKDE4J) with an average F1-score of 73.81%. For further validation, we randomly sampled nearly 1,000 predicted interactions by our model, and manually checked the correctness of each interaction, which gives a 73% accuracy. The MDIDB webiste is freely avaliable throuth http://***/index/ © 2021, CC BY.

关键词： Bacteria

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high order semi-implicit weighted compact nonlinear scheme for the all-Mach isentropic Euler system

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Advances in Aerodynamics 2020年第1期2卷 555-578页

作者： Yanqun Jiang Xun Chen Xu Zhang Tao Xiong Shuguang Zhou Department of Mathematics Southwest University of Science and Technology621010 MianyangChina School of Mathematical Sciences Fujian Provincial Key Laboratory of Mathematical Modeling and High-Performance Scientific ComputingXiamen University361005 XiamenChina Computational Aerodynamics Institute China Aerodynamics Research and Development Center621000 MianyangChina

The computation of compressible flows at all Mach numbers is a very challenging *** efficient numerical method for solving this problem needs to have shock-capturing capability in the high Mach number regime,while it can deal with stiffness and accuracy in the low Mach number *** paper designs a high order semi-implicit weighted compact nonlinear scheme(WCNS)for the all-Mach isentropic Euler system of compressible gas *** avoid severe Courant-Friedrichs-Levy(CFL)restrictions for low Mach flows,the nonlinear fluxes in the Euler equations are split into stiff and non-stiff components.A third-order implicit-explicit(IMEX)method is used for the time discretization of the split components and a fifth-order WCNS is used for the spatial discretization of flux *** high order IMEX method is asymptotic preserving and asymptotically accurate in the zero Mach number ***-and two-dimensional numerical examples in both compressible and incompressible regimes are given to demonstrate the advantages of the designed IMEX WCNS.

关键词： high order scheme IMEX time discretization WCNS Asymptotic-preserving property Low Mach number Isentropic Euler equations

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Towards Integrated Traffic Control with Operating Decentralized Autonomous Organization

arXiv

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arXiv 2023年

作者： Yao, Shengyue Yu, Jingru Yu, Yi Xu, Jia Dai, Xingyuan Li, Honghai Wang, Fei-Yue Lin, Yilun Urban Computing Shanghai AI Lab Shanghai China The State Key Laboratory for Management and Control of Complex Systems Institute of Automation Chinese Academy of Sciences Beijing100190 China The Research and Development Center of Transport Industry of Autonomous Driving Technology RIOH High and Technology Group The Institute of Automation Chinese Academy of Sciences Beijing China The Macau Institute of Systems Engineering Macau University of Science and Technology China

With a growing complexity of the intelligent traffic system (ITS), an integrated control of ITS that is capable of considering plentiful heterogeneous intelligent agents is desired. However, existing control methods based on the centralized or the decentralized scheme have not presented their competencies in considering the optimality and the scalability simultaneously. To address this issue, we propose an integrated control method based on the framework of Decentralized Autonomous Organization (DAO). The proposed method achieves a global consensus on energy consumption efficiency (ECE), meanwhile to optimize the local objectives of all involved intelligent agents, through a consensus and incentive mechanism. Furthermore, an operation algorithm is proposed regarding the issue of structural rigidity in DAO. Specifically, the proposed operation approach identifies critical agents to execute the smart contract in DAO, which ultimately extends the capability of DAO-based control. In addition, a numerical experiment is designed to examine the performance of the proposed method. The experiment results indicate that the controlled agents can achieve a consensus faster on the global objective with improved local objectives by the proposed method, compare to existing decentralized control methods. In general, the proposed method shows a great potential in developing an integrated control system in the ITS. © 2023, CC BY.

关键词： Integrated control

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high-Temperature Anomalous Metal States in Iron-Based Interface Superconductors

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Physical Review Letters 2024年第22期132卷 226003-226003页

作者： Yanan Li Haiwen Liu Haoran Ji Chengcheng Ji Shichao Qi Xiaotong Jiao Wenfeng Dong Yi Sun Wenhao Zhang Zihan Cui Minghu Pan Nitin Samarth Lili Wang X. C. Xie Qi-Kun Xue Yi Liu Jian Wang International Center for Quantum Materials School of Physics Peking University Beijing 100871 China Department of Physics The Pennsylvania State University University Park Pennsylvania 16802 USA Center for Advanced Quantum Studies Department of Physics Beijing Normal University Beijing 100875 China Hefei National Laboratory Hefei 230088 China State Key Laboratory of Low-Dimensional Quantum Physics Department of Physics Tsinghua University Beijing 100084 China School of Physics and Information Technology Shaanxi Normal University Xi’an 710119 China School of Physics and Wuhan National High Magnetic Field Center Huazhong University of Science and Technology Wuhan 430074 China Department of Physics and Beijing Key Laboratory of Opto-electronic Functional Materials & Micro-nano Devices Renmin University of China Beijing 100872 China Collaborative Innovation Center of Quantum Matter Beijing 100871 China Institute for Nanoelectronic Devices and Quantum Computing Fudan University Shanghai 200433 China Southern University of Science and Technology Shenzhen 518055 China Key Laboratory of Quantum State Construction and Manipulation (Ministry of Education) Renmin University of China Beijing 100872 China

The nature of the anomalous metal state has been a major puzzle in condensed matter physics for more than three decades. Here, we report systematic investigation and modulation of the anomalous metal states in high-temperature interface superconductor FeSe films on SrTiO3 substrate. Remarkably, under zero magnetic field, the anomalous metal state persists up to 20 K in pristine FeSe films, an exceptionally high temperature standing out from previous observations. In stark contrast, for the FeSe films with nanohole arrays, the characteristic temperature of the anomalous metal state is considerably reduced. We demonstrate that the observed anomalous metal states originate from the quantum tunneling of vortices adjusted by the Ohmic dissipation. Our work offers a perspective for understanding the origin and modulation of the anomalous metal states in two-dimensional bosonic systems.

关键词： Superconductivity Transport phenomena Crystalline systems Thin films Cryogenics Molecular beam epitaxy Resistivity measurements

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Towards Integrated Traffic Control with Operating Decentralized Autonomous Organization

Towards Integrated Traffic Control with Operating Decentrali...

引用

International Conference on Intelligent Transportation

作者： Shengyue Yao Jingru Yu Yi Yu Jia Xu Xingyuan Dai Honghai Li Fei-Yue Wang Yilun Lin Urban Computing Shanghai AI Lab Shanghai China The State Key Laboratory for Management and Control of Complex Systems Institute of Automation Chinese Academy of Sciences Beijing China Research and Development Center of Transport Industry of Autonomous Driving Technology RIOH High and Technology Group Institute of Automation Chinese Academy of Sciences Beijing China Macau Institute of Systems Engineering Macau University of Science and Technology Macau China

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high ORDER ASYMPTOTIC PRESERVING WELL-BALANCED FINITE DIFFERENCE WENO SCHEMES FOR ALL MACH FULL EULER EQUATIONS WITH GRAVITY

arXiv

引用

arXiv 2022年

作者： Huang, Guanlan Xing, Yulong Xiong, Tao School of Mathematical Sciences Xiamen University Fujian Xiamen361005 China Department of Mathematics The Ohio State University ColumbusOH43210 United States School of Mathematical Sciences Fujian Provincial Key Laboratory of Mathematical Modeling and High-Performance Scientific Computing Xiamen University Fujian Xiamen361005 China

In this paper, we propose a high order semi-implicit well-balanced finite difference scheme for all Mach Euler equations with a gravitational source term. To obtain the asymptotic preserving property, we start from the conservative form of full compressible Euler equations and add the evolution equation of the perturbation of potential temperature. The resulting system is then split into a (non-stiff) nonlinear low dynamic material wave to be treated explicitly, and (stiff) fast acoustic and gravity waves to be treated implicitly. With the aid of explicit time evolution for the perturbation of potential temperature, we design a novel well-balanced finite difference WENO scheme for the conservative variables, which can be proven to be both asymptotic preserving and asymptotically accurate in the incompressible limit. Extensive numerical experiments were provided to validate these properties. © 2022, CC BY.

关键词： Euler equations

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Searching for neutrino emission from the Cygnus region 38

Searching for neutrino emission from the Cygnus region

引用

38th International Cosmic Ray Conference, ICRC 2023

作者： Li, Wenlian Huang, Tian-Qi Xu, Donglian He, Huihai Cao, Zhen Aharonian, F. An, Q. Axikegu Bai, Y.X. Bao, Y.W. Bastieri, D. Bi, X.J. Bi, Y.J. Cai, J.T. Cao, Q. Cao, W.Y. Cao, Zhe Chang, J. Chang, J.F. Chen, A.M. Chen, E.S. Chen, Liang Chen, Lin Chen, Long Chen, M.J. Chen, M.L. Chen, Q.H. Chen, S.H. Chen, S.Z. Chen, T.L. Chen, Y. Cheng, N. Cheng, Y.D. Cui, M.Y. Cui, S.W. Cui, X.H. Cui, Y.D. Dai, B.Z. Dai, H.L. Dai, Z.G. Danzengluobu della Volpe, D. Dong, X.Q. Duan, K.K. Fan, J.H. Fan, Y.Z. Fang, J. Fang, K. Feng, C.F. Feng, L. Feng, S.H. Feng, X.T. Feng, Y.L. Gabici, S. Gao, B. Gao, C.D. Gao, L.Q. Gao, Q. Gao, W. Gao, W.K. Ge, M.M. Geng, L.S. Giacinti, G. Gong, G.H. Gou, Q.B. Gu, M.H. Guo, F.L. Guo, X.L. Guo, Y.Q. Guo, Y.Y. Han, Y.A. He, H.H. He, H.N. He, J.Y. He, X.B. He, Y. Heller, M. Hor, Y.K. Hou, B.W. Hou, C. Hou, X. Hu, H.B. Hu, Q. Hu, S.C. Huang, D.H. Huang, T.Q. Huang, W.J. Huang, X.T. Huang, X.Y. Huang, Y. Huang, Z.C. Ji, X.L. Jia, H.Y. Jia, K. Jiang, K. Jiang, X.W. Jiang, Z.J. Jin, M. Kang, M.M. Ke, T. Kuleshov, D. Kurinov, K. Li, B.B. Li, Cheng Li, Cong Li, D. Li, F. Li, H.B. Li, H.C. Li, H.Y. Li, J. Li, Jian Li, Jie Li, K. Li, W.L. Li, W.L. Li, X.R. Li, Xin Li, Y.Z. Li, Zhe Li, Zhuo Liang, E.W. Liang, Y.F. Lin, S.J. Liu, B. Liu, C. Liu, D. Liu, H. Liu, H.D. Liu, J. Liu, J.L. Liu, J.Y. Liu, M.Y. Liu, R.Y. Liu, S.M. Liu, W. Liu, Y. Liu, Y.N. Lu, R. Luo, Q. Lv, H.K. Ma, B.Q. Ma, L.L. Ma, X.H. Mao, J.R. Min, Z. Mitthumsiri, W. Mu, H.J. Nan, Y.C. Neronov, A. Ou, Z.W. Pang, B.Y. Pattarakijwanich, P. Pei, Z.Y. Qi, M.Y. Qi, Y.Q. Qiao, B.Q. Qin, J.J. Ruffolo, D. Sáiz, A. Semikoz, D. Shao, C.Y. Shao, L. Shchegolev, O. Sheng, X.D. Shu, F.W. Song, H.C. Stenkin, Yu.V. Stepanov, V. Su, Y. Tsung-Dao Lee Institute Shanghai Jiao Tong University Shanghai201210 China Key Laboratory of Particle Astrophysics Experimental Physics Division Computing Center Institute of High Energy Physics Chinese Academy of Sciences Beijing100049 China Shanghai Key Laboratory for Particle Physics and Cosmology Shanghai200240 China Key Laboratory of Particle Astrophyics Experimental Physics Division Computing Center Institute of High Energy Physics Chinese Academy of Sciences Beijing100049 China University of Chinese Academy of Sciences Beijing100049 China Tianfu Cosmic Ray Research Center Sichuan Chengdu610000 China Dublin Institute for Advanced Studies 31 Fitzwilliam Place Dublin 2 Ireland Max-Planck-Institut for Nuclear Physics P.O. Box 103980 Heidelberg69029 Germany State Key Laboratory of Particle Detection and Electronics China University of Science and Technology of China Anhui Hefei230026 China School of Physical Science and Technology School of Information Science and Technology Southwest Jiaotong University Sichuan Chengdu610031 China School of Astronomy and Space Science Nanjing University Jiangsu Nanjing210023 China Center for Astrophysics Guangzhou University Guangdong Guangzhou510006 China Hebei Normal University Hebei Shijiazhuang050024 China Key Laboratory of Dark Matter and Space Astronomy Key Laboratory of Radio Astronomy Purple Mountain Observatory Chinese Academy of Sciences Jiangsu Nanjing210023 China Tsung-Dao Lee Institute School of Physics and Astronomy Shanghai Jiao Tong University Shanghai200240 China Key Laboratory for Research in Galaxies and Cosmology Shanghai Astronomical Observatory Chinese Academy of Sciences Shanghai200030 China Key Laboratory of Cosmic Rays Tibet University Ministry of Education Tibet Lhasa850000 China National Astronomical Observatories Chinese Academy of Sciences Beijing100101 China School of Physics and Astronomy Sun Yat-sen University Zhuhai519000 China School of Physics Sun Ya

The Cygnus region, which contains massive molecular and atomic clouds and young stars, is a promising Galactic neutrino source candidate. Cosmic rays transport in the region can produce neutrinos and γ-rays. Using ten years of track events detected by the IceCube Neutrino Observatory, we conduct searches for neutrino signals from the Cygnus region with a template method. Four templates, including the CO template, HI template, uniform template, and 2D Gaussian template, are used in this study. No significant emissions are found. We set upper limits for each template, with the resulting upper limit for the CO template being dν/dEν = 6.25 × 10−17(Eν/100TeV)−3TeV−1cm−2s−1 © Copyright owned by the author(s) under the terms of the Creative Commons.

关键词： Cosmology

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Searching for neutrino signals correlated with LHAASO diffuse Galactic emission 38

Searching for neutrino signals correlated with LHAASO diffus...

引用

38th International Cosmic Ray Conference, ICRC 2023

The diffuse Galactic γ-ray emission is produced from the interaction of cosmic rays and interstellar medium or radiation fields in the Galaxy, where neutrino production is also expected. Recently, the Large high Altitude Air Shower Observatory (LHAASO) reported the measurements of the diffuse γ-ray from the Galactic plane with energies above 10 TeV. In this study, we construct the neutrino emission template based on LHAASO’s observation and search for diffuse neutrinos accompanying the LHAASO diffuse Galactic γ-ray emission using ten-year IceCube track events. No significant signals are found. We set 90% confidence level upper limits, resulting in the neutrino flux of dν/dEν = 1.27 × 10−14(Eν/25TeV)−2.99TeV−1cm−2s−1 for the diffuse γ-ray flux map with a 1.5σ significance cut. © Copyright owned by the author(s) under the terms of the Creative Commons.

关键词： Gamma rays

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