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Mem Brain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction

Nano-Micro Letters 2018年第1期10卷 12-19页

作者： Xi Yin Jing Yang Feng Xiao Yang Yang Hong-Bin Shen Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Department of Computer Science Shanghai Jiao Tong University Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering

Membrane proteins are an important kind of proteins embedded in the membranes of cells and play crucial roles in living organisms, such as ion channels,transporters, receptors. Because it is difficult to determinate the membrane protein's structure by wet-lab experiments,accurate and fast amino acid sequence-based computational methods are highly desired. In this paper, we report an online prediction tool called Mem Brain, whose input is the amino acid sequence. Mem Brain consists of specialized modules for predicting transmembrane helices, residue–residue contacts and relative accessible surface area of a-helical membrane proteins. Mem Brain achieves aprediction accuracy of 97.9% of ATMH, 87.1% of AP,3.2 ± 3.0 of N-score, 3.1 ± 2.8 of C-score. Mem BrainContact obtains 62%/64.1% prediction accuracy on training and independent dataset on top L/5 contact prediction,respectively. And Mem Brain-Rasa achieves Pearson correlation coefficient of 0.733 and its mean absolute error of13.593. These prediction results provide valuable hints for revealing the structure and function of membrane *** Brain web server is free for academic use and available at ***/bioinf/Mem Brain/.

关键词： Transmembrane a-helices Structure prediction Machine learning Contact map prediction Relative accessible surface area

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A battery management system with two-stage equalization 29

A battery management system with two-stage equalization

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第29届中国控制与决策会议

作者： Shengping Hong Jianhua Jiang Xi Li School of Automation Key Laboratory of Education Ministry for Image Processing and Intelligent ControlHuazhong University of Science & Technology

ISBN: (纸本)9781509046584

This paper presents a lithium-ion battery pack equalization system and method. The batteries are divided into several groups, which are connected in parallel with the bidirectional DC-DC converters respectively, and the output of DC-DC converters ends are connected in series with each other as a DC bus. The scheme divides equalization of the cells into two stages: intra-group equalization and inter-group equalization, and the two stages are respectively realized by battery time-sharing-access structure and stack energy-sharing structure. Then equalization strategy of the distributed battery energy storage system under two stages is proposed, especially the Single Cell Battery Access Timing Algorithm and MPC Algorithm. The simulation results show that the proposed battery management structure and control strategy can realize fast and accurate SOC equalization.

关键词： Battery management system(BMS) cell equalization battery time-sharing-access structure stack energy-sharing structure Single Cell Battery Access Timing Algorithm MPC Algorithm

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Angel girl of visually impaired artists: Painting navigation system for blind or visually impaired painters 34

Angel girl of visually impaired artists: Painting navigation...

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34th IEEE International Conference on Visual communications and image processing, VCIP 2019

作者： Liu, Hang Hu, Menghan Zhai, Guangtao Huang, Huijing Zhang, Wa Li, Qingli Tian, Yinghong Shi, Yanling East China Normal University Shanghai Key Laboratory of Multidimensional Information Processing China Shanghai Jiao Tong University Institute of Image Communication and Information Processing China

ISBN: (纸本)9781728137230

For those who love painting but unfortunately have visual impairments, holding a paintbrush to create a work is really a difficult task. For the purpose of solving this problem, a painting navigation system for visually impaired painters is introduced through the live demonstration. When painting, the developed system can endow visually impaired persons with the ability to perceive the surrounding environment, thus helping them realize their dream of painting. To achieve this goal, we designed four main modules viz., QR code based drawing board positioning module, brush real-Time positioning module, color recognition module and human-computer interaction module, and integrated them into the system. In the validation experiments, the blindfolded users can successfully create a painting with the help of the developed navigation system. Moreover, the users told us that this system provided them with good experience. In a way, this painting navigation system can be seen as "angel's eyes" of visually impaired painters. The demo video of the proposed painting navigation system is available at: https://***/10.6084/***.9760004.v1. © 2019 IEEE.

关键词： Navigation systems

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New method in information processing for maintaining an efficient dynamic ordered set

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Science in China(Series F) 2009年第8期52卷 1292-1301页

作者： XIN ShiQing WANG GuoJin Institute of Computer Graphics and Image Processing Zhejiang University Hangzhou 310027 China State Key Laboratory of CAD & CG Zhejiang University Hangzhou 310027 China

This paper investigates how to maintain an efficient dynamic ordered set of bit strings, which is an important problem in the field of information search and information processing. Generally, a dynamic ordered set is required to support 5 essential operations including search, insertion, deletion, max-value retrieval and next-larger-value retrieval. Based on previous research fruits, we present an advanced data structure named rich binary tree （RBT）, which follows both the binary-search-tree property and the digital-search-tree property. Also, every key K keeps the most significant difference bit （MSDB） between itself and the next larger value among K＇s ancestors, as well as that between itself and the next smaller one among its ancestors. With the new data structure, we can maintain a dynamic ordered set in O（L） time. Since computers represent objects in binary mode, our method has a big potential in application. In fact, RBT can be viewed as a general-purpose data structure for problems concerning order, such as search, sorting and maintaining a priority queue. For example, when RBT is applied in sorting, we get a linear-time algorithm with regard to the key number and its performance is far better than quick-sort. What is more powerful than quick-sort is that RBT supports constant-time dynamic insertion/deletion.

关键词： information processing dynamic ordered set algorithms and data structures rich binary tree

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On a dualband rectangular dielectric resonator antenna for WLAN applications 5

On a dualband rectangular dielectric resonator antenna for W...

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5th IEEE International Conference on Computational Electromagnetics, ICCEM 2019

作者： Xiaosheng, Fang Shuangming, Chen Lingpeng, Weng Guangdong Provincial Key Laboratory of Digital Signal and Image Processing Shantou University Shantou China

ISBN: (纸本)9781538671115

A slot-fed dualband rectangular dielectric resonator antenna (DRA) for WLAN applications is investigated. ANSYS HFSS was used to study the reflection coefficient, radiation patterns and antenna gain of the dualband DRA. The results show that it can provide two passbands in the ranges of 2.4-2.82 GHz and 5.07-5.54 GHz, which completely cover the 2.4-GHz/5.2-GHz WLAN bands. The proposed dualband DRA can provide a relatively larger high-to-low frequency ratio of ~2.1. © 2019 IEEE.

关键词： Microwave antennas

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Deployment of Heterogeneous Multi-Agent Systems via a PDE Approach

Deployment of Heterogeneous Multi-Agent Systems via a PDE Ap...

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2023 China Automation Congress, CAC 2023

作者： Man, Jingtao Zeng, Zhigang Xiao, Qiang Key Laboratory of Image Information Processing and Intelligent Control Ministry of Education of China Wuhan China

ISBN: (纸本)9798350303759

Spatial deployment of large-scale heterogeneous multi-agent systems (HMASs) over desired 2D or 3D curves is investigated in this paper. With assumption that HMASs consist of numerous first-order agents (FOAs) and second-order agents (SOAs) that could obtain local information of desired curves and their positions relative to their closest neighbors, the collective dynamics of large-scale HMASs are modeled as heterogeneous partial differential equations (PDEs). In particular, this paper introduces series-dependent topological weights between neighboring agents, which are more versatile and practical than constant topological weights commonly used in previous studies. A novel single-point control scheme is proposed, where an informed agent is situated between the last FOA and first SOA. This operation could not only ensure successful implementation of spatial deployment, but also guarantee well-posedness of the constructed heterogeneous error PDEs. By utilizing inequality techniques, sufficient conditions for exponential convergence of error system are derived. A numerical example is presented to demonstrate effectiveness of the proposed approaches. © 2023 IEEE.

关键词： Multi agent systems

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A global heuristically search algorithm for DNA encoding

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Progress in Natural Science:Materials International 2007年第6期17卷 745-749页

作者： Zhang Kai, Pan Linqiang and Xu Jin (The key laboratory of image processing and Intelligent Control, Department of Control Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, China) [a]The Key Laboratory of Image Processing and Intelligent Control Department of Control Science and Engineering Huazhong University of Science and Technology Wuhan China

A new efficient algorithm is developed to design DNA words with equal length for DNA computing. The algorithm uses a global heuristic optimizing search approach and converts constraints to a carry number to accelerate the convergence, which can generate a DNA words set satisfying some thermodynamic and combinatorial constraints. Based on the algorithm, a software for DNA words design is developed.

关键词： DNA computing encoding heuristic optimizing search

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A Novel Self-Learning Network Integrating Contrastive Learning, Perceptual Learning and Masked image Modelling 15

A Novel Self-Learning Network Integrating Contrastive Learni...

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15th International Conference on Graphics and image processing, ICGIP 2023

作者： Chen, Yingxian Yang, Rui Lan, Rushi Guangxi Key Laboratory Image and Graphic Intelligent Processing Guilin University of Electronic Technology China

ISBN: (纸本)9781510675018

Unsupervised learning methods in computer vision have achieved remarkable success, exceeding the performance of supervised learning methods. It is noteworthy that current unsupervised learning methods share certain similarities, particularly in their data augmentation techniques. Masking, a type of data augmentation, can be utilized for both contrastive learning and masked image modelling. This paper presents a novel deep learning approach on visual unsupervised learning. It integrates previous methods such as contrastive learning, perceptual learning, self-distillation and masked image modelling. In our method, we treat the network that handles the original images as the teacher network, and the network that handles the masked images as the student network. The student network employs the representations extracted by the projection head for contrastive learning, while the features generated by the decoder are employed for masked image modeling. The process of self-knowledge distillation is facilitated by perceptual learning between the teacher and student networks. This model aligns with the main idea of contrastive learning, which aims to pull similar images closer while pushing dissimilar images further apart. Simultaneously, it reflects the main idea of masked image modelling, which enables the extraction of semantic information from large scale masked pixel reconstruction tasks. Additionally, we compare the effect of self-supervised methods to the performance of the model. Our results show that with only 75 epochs of fine-tuning, our 29M-parameter model achieves 78.5% top-1 accuracy on the imageNet-1k dataset. © 2024 SPIE. All rights reserved.

关键词： Unsupervised learning

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Semi-global scaled edge-consensus of linear discrete-time multi-agent systems with positive constraint and input saturation 7

Semi-global scaled edge-consensus of linear discrete-time mu...

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7th International Conference on Information, Cybernetics, and Computational Social Systems, ICCSS 2020

作者： Fan, Zhipeng Sun, Yaping Su, Housheng Huazhong University of Science and Technology Key Laboratory of Image Processing and Intelligent Control Wuhan China

ISBN: (纸本)9781728162461

The thesis studies the semi-global scaled edge-consensus of linear discrete-time multi-agent systems under both the directed networks and undirected networks, where the states of each edge are subject to input saturation and positive constraint. By virtue of the MARE-based low-gain feedback method, two control protocols about directed networks and undirected networks are devised respectively to promise the positive scaled edge-consensus with input saturation. Thus we find the sufficient conditions to promise the positive edge states and overcome the input saturation. Finally, two representative examples are presented to prove the results. © 2020 IEEE.

关键词： Multi agent systems

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AN ADAPTIVE MEMBRANE ALGORITHM FOR SOLVING COMBINATORIAL OPTIMIZATION PROBLEMS

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Acta Mathematica Scientia 2014年第5期34卷 1377-1394页

作者：贺娟娟肖建华邵泽辉 Key Laboratory of Image Processing and Intelligent Control School of AutomationHuazhong University of Science and Technology The Research Center of Logistics Nankai University School of Information Science and Technology Chengdu University

Membrane algorithms （MAs）, which inherit from P systems, constitute a new parallel and distribute framework for approximate computation. In the paper, a membrane algorithm is proposed with the improvement that the involved parameters can be adaptively chosen. In the algorithm, some membranes can evolve dynamically during the computing process to specify the values of the requested parameters. The new algorithm is tested on a well-known combinatorial optimization problem, the travelling salesman problem. The em-pirical evidence suggests that the proposed approach is efficient and reliable when dealing with 11 benchmark instances, particularly obtaining the best of the known solutions in eight instances. Compared with the genetic algorithm, simulated annealing algorithm, neural net-work and a fine-tuned non-adaptive membrane algorithm, our algorithm performs better than them. In practice, to design the airline network that minimize the total routing cost on the CAB data with twenty-five US cities, we can quickly obtain high quality solutions using our algorithm.

关键词： membrane algorithm adaptation travelling salesman problem

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