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arXiv 2020年

作者： Zhang, Lei He, Zhenwei Yang, Yi Wang, Liang Gao, Xinbo School of Microelectronics and Communication Engineering Chongqing University Chongqing400044 China Center for Artificial Intelligence University of Technology Sydney Australia National Laboratory of Pattern Recognition Institute of Automation Chinese Academy of Sciences Beijing100190 China Chongqing Key Laboratory of Image Cognition Chongqing University of Posts and Telecommunications Chongqing400065 China

The traditional object (person) retrieval (re-identification) task aims to learn a discriminative feature representation with intra-similarity and inter-dissimilarity, which supposes that the objects in an image are manually or automatically pre-cropped exactly. However, in many real-world searching scenarios (e.g., video surveillance), the objects (e.g., persons, vehicles, etc.) are seldom accurately detected or annotated. Therefore, object-level retrieval becomes intractable without bounding-box annotation, which leads to a new but challenging topic, i.e. image-level search with multi-task integration of joint detection and retrieval. In this paper, to address the image search issue, we first introduce an end-to-end Integrated Net (I-Net), which has three merits: 1) A Siamese architecture and an on-line pairing strategy for similar and dissimilar objects in the given images are designed. Benefited by the Siamese structure, I-Net learns the shared feature representation, because, on which, both object detection and classification tasks are handled. 2) A novel on-line pairing (OLP) loss is introduced with a dynamic feature dictionary, which alleviates the multi-task training stagnation problem, by automatically generating a number of negative pairs to restrict the positives. 3) A hard example priority (HEP) based softmax loss is proposed to improve the robustness of classification task by selecting hard categories. The shared feature representation of I-Net may restrict the task-specific flexibility and learning capability between detection and retrieval tasks. Therefore, with the philosophy of divide and conquer, we further propose an improved I-Net, called DC-I-Net, which makes two new contributions: 1) two modules are tailored to handle different tasks separately in the integrated framework, such that the task specification is guaranteed. 2) A class-center guided HEP loss (C2HEP) by exploiting the stored class centers is proposed, such that the intra-similarity a

关键词： Object recognition

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Prediction of σ54 promoters in prokaryotes based on SVM–Adaboost

Prediction of σ54 promoters in prokaryotes based on SVM–Ad...

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Chinese Automation Congress (CAC)

作者： Yongxian Fan Qingqi Zhu Chengwei Lv Xianyong Pan School of Computer and Information Security Guilin University of Electronic Technology Guilin Guangxi Key Laboratory of System Control and Information Processing Ministry of Education of China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China

σ 54 promoters are responsible for transcriptional carbon and nitrogen in prokaryotes. However, it is costly and difficult by experimental identification of them, especially in the postgenomic era with avalanche of sequencing data. Thus, it is imperative to develop efficiently and rapidly computational algorithms to identify the σ 54 promoters. In this study, a novel predictor named SVM-Adaboost was developed to predict σ 54 promoters from sequences alone, it used the Adaboost algorithm as the core, and support vector machine (SVM) as weak base predictors. SVM-Adaboost integrated SVM predictors to construct a more powerful and robust ensemble predictor. In SVM-Adaboost, we used pseudo k-tuple nucleotide composition method to encode DNA sequences, and then a feature selection method was used to further select the discriminate features for subsequent classification. We strictly evaluate the SVM-Adaboost on a constructed gold-standard σ 54 promoter dataset using ten-fold cross validation 100 times, and achieved an average accuracy of 96.06%.

关键词： DNA Support vector machines Feature extraction Training Prediction algorithms Benchmark testing Computational modeling

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Automatic Monitoring of Driver's Physiological Parameters Based on Microarray Camera

Automatic Monitoring of Driver's Physiological Parameters Ba...

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IEEE Eurasia Conference on Biomedical Engineering, Healthcare and Sustainability (ECBIOS)

作者： Jiancheng Zou Zhengzheng Li Peizhou Yan Institute of Image Processing and Pattern Recognition North China University of Technology Beijing Key Laboratory of Urban Rod Traffic Intelligent Control Technology North China University of Technology Shijingshan District Beijing China

Driver's physical and mental states are very important factors affecting the driving states. Traffic accidents are occurred by accompanying abnormal physiological parameters. So how to monitor automatically driver's physiological parameters is an important problem. A real-time driver's physiological parameters monitoring method based on microarray camera is proposed in this paper. Firstly, we use a microarray camera to acquire videos in real time without contact. Secondly, the videos are registered and fused into a high quality video. Thirdly, deep learning framework is used to capture driver's facial data quickly. Then based on the principle of imaging photoplethysmography (IPPG) algorithm, physiological parameters such as heart rate (HR) and oxygen saturation (SpO 2 ) are monitored in real time. Results of expression analysis can further support the physiological parameters monitoring results. The experimental results show that the method proposed in this paper can monitor the physiological parameters of drivers in real time and accurately, and it is hopeful to play an active role in improving traffic safety.

关键词： Biomedical monitoring Monitoring Cameras Videos Heart rate Real-time systems

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Unsupervised Local Discrimination for Medical images

arXiv

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arXiv 2021年

作者： Chen, Huai Wang, Renzhen Wang, Xiuying Li, Jieyu Fang, Qu Li, Hui Bai, Jianhao Peng, Qing Meng, Deyu Wang, Lisheng Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University Shanghai200240 China School of Mathematics and Statistics Ministry of Education Key Lab of Intelligent Networks and Network Security Xi’an Jiaotong University Xi’an710049 China The School of Computer Science The University of Sydney SydneyNSW2006 Australia Department of Ophthalmology Shanghai Tenth People’s Hospital Tongji University Shanghai200240 China The Cooperative Medianet Innovation Center Shanghai Jiao Tong University Shanghai200240 China The Changchun GeneScience Pharmaceutical Co. LTD China

Contrastive learning, which aims to capture general representation from unlabeled images to initialize the medical analysis models, has been proven effective in alleviating the high demand for expensive annotations. Current methods mainly focus on instance-wise comparisons to learn the global discriminative features, however, pretermitting the local details to distinguish tiny anatomical structures, lesions, and tissues. To address this challenge, in this paper, we propose a general unsupervised representation learning framework, named local discrimination (LD), to learn local discriminative features for medical images by closely embedding semantically similar pixels and identifying regions of similar structures across different images. Specifically, this model is equipped with an embedding module for pixel-wise embedding and a clustering module for generating segmentation. And these two modules are unified through optimizing our novel region discrimination loss function in a mutually beneficial mechanism, which enables our model to reflect structure information as well as measure pixel-wise and region-wise similarity. Furthermore, based on LD, we propose a center-sensitive one-shot landmark localization algorithm and a shape-guided cross-modality segmentation model to foster the generalizability of our model. When transferred to downstream tasks, the learned representation by our method shows a better generalization, outperforming representation from 18 state-of-the-art (SOTA) methods and winning 9 out of all 12 downstream tasks. Especially for the challenging lesion segmentation tasks, the proposed method achieves significantly better performances. The source codes are publicly available at https://***/HuaiChen-1994/LDLearning. Copyright © 2021, The Authors. All rights reserved.

关键词： Embeddings

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Self-grouping convolutional neural networks

arXiv

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arXiv 2020年

作者： Guo, Qingbei Wu, Xiao-Jun Kittler, Josef Feng, Zhiquan Jiangsu Provincial Engineering Laboratory of Pattern Recognition and Computational Intelligence Jiangnan University Wuxi214122 China Shandong Provincial Key Laboratory of Network based Intelligent Computing University of Jinan Jinan250022 China Centre for Vision Speech and Signal Processing University of Surrey GuildfordGU2 7XH United Kingdom

Although group convolution operators are increasingly used in deep convolutional neural networks to improve the computational efficiency and to reduce the number of parameters, most existing methods construct their group convolution architectures by a predefined partitioning of the filters of each convolutional layer into multiple regular filter groups with an equal spatial group size and data-independence, which prevents a full exploitation of their potential. To tackle this issue, we propose a novel method of designing self-grouping convolutional neural networks, called SG-CNN, in which the filters of each convolutional layer group themselves based on the similarity of their importance vectors. Concretely, for each filter, we first evaluate the importance value of their input channels to identify the importance vectors, and then group these vectors by clustering. Using the resulting data-dependent centroids, we prune the less important connections, which implicitly minimizes the accuracy loss of the pruning, thus yielding a set of diverse group convolution filters. Subsequently, we develop two fine-tuning schemes, i.e. (1) both local and global fine-tuning and (2) global only fine-tuning, which experimentally deliver comparable results, to recover the recognition capacity of the pruned network. Comprehensive experiments carried out on the CIFAR-10/100 and imageNet datasets demonstrate that our self-grouping convolution method adapts to various state-of-the-art CNN architectures, (Figure presented) Figure 1: Evolution of group convolutions. (a) Regular convolution. (b) Regular group convolution. (c) Permuting group convolution. (d) Learned group convolution. (d) Self-grouping convolution. Note that white channels represent the ignored input channels, and gray channels indicate the reused input channels. such as ResNet and DenseNet, and delivers superior performance in terms of compression ratio, speedup and recognition accuracy. We demonstrate the ability of SG-CNN

关键词： Convolution

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Current Progress and Challenges in Large-scale 3D Mitochondria Instance Segmentation

TechRxiv

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TechRxiv 2023年

作者： Franco-Barranco, Daniel Lin, Zudi Jang, Won-Dong Wang, Xueying Shen, Qijia Yin, Wenjie Fan, Yutian Li, Mingxing Chen, Chang Xiong, Zhiwei Xin, Rui Liu, Hao Chen, Huai Li, Zhili Zhao, Jie Chen, Xuejin Pape, Constantin Conrad, Ryan De Folter, Jozefus Nightingale, Luke Jones, Martin L. Liu, Yanling Ziaei, Dorsa Huschauer, Stephan Arganda-Carreras, Ignacio Pfister, Hanspeter Wei, Donglai The Department of Computer Science and Artificial Intelligence University of the Basque Country Donostia-San Sebastian Spain San Sebastian Spain Ikerbasque Basque Foundation for Science Bilbao Spain Biofisika Institute CSIC UPV/EHU Bilbao Spain Harvard University All-ston MA United States The Department of Molecular and Cellular Biology Harvard University CambridgeMA United States The Wellcome Centre for Integrative Neuroimaging FMRIB Nuffield Department of Clinical Neurosciences University of Oxford Oxford United Kingdom University of Science and Technology of China Anhui China The Institute of Image Processing and Pattern Recognition Department of Automation Shanghai Jiao Tong University Shanghai China The National Engineering Laboratory for Brain-inspired Intelligence Technology and Application University of Science and Technology of China Anhui China The Georg-August University Goettingen Germany The Center for Molecular Microscopy Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda United States The Cancer Research Technology Program Frederick National Laboratory for Cancer Research Frederick United States The Francis Crick Institute London United Kingdom The Advanced Biomedical Computational Science Group Frederick National Laboratory for Cancer Research FrederickMD United States The Computer Science Department Boston College Chestnut Hill MA United States

In this paper, we present the results of the MitoEM challenge on mitochondria 3D instance segmentation from electron microscopy images, organized in conjunction with the IEEE-ISBI 2021 conference. Our benchmark dataset consists of two large-scale 3D volumes, one from human and one from rat cortex tissue, which are 3,600 times larger than previously used datasets. At the time of paper submission, 257 participants had registered for the challenge, 14 teams had submitted their results, and six teams participated in the challenge workshop. Here, we present eight top-performing approaches from the challenge participants, along with our own baseline strategies. Posterior to the challenge, annotation errors in the ground truth were corrected without altering the final ranking. Additionally, we present a retrospective evaluation of the scoring system which revealed that (1) the challenge metric was permissive with the false positive predictions and (2) the size-based grouping of instances did not correctly categorize mitochondria of interest. Thus, we propose a new scoring system that better reflects the correctness of the segmentation results. Although several of the top methods are compared favorably to our own baselines, substantial errors remain unsolved for mitochondria with challenging morphologies. Thus, the challenge remains open for submission and automatic evaluation, with all volumes available for download. © 2023, CC BY.

关键词： Electron microscopy

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Learning tubule-sensitive CNNs for pulmonary airway and artery-vein segmentation in CT

arXiv

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arXiv 2020年

作者： Qin, Yulei Zheng, Hao Gu, Yun Huang, Xiaolin Yang, Jie Wang, Lihui Yao, Feng Zhu, Yue-Min Yang, Guang-Zhong Institute of Image Processing and Pattern Recognition Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province School of Computer Science and Technology Guizhou University Guiyang China Department of Thoracic Surgery Shanghai Chest Hospital Shanghai Jiao Tong University Shanghai China Université de Lyon INSA Lyon CREATIS CNRS INSERM UMR 5220 VilleurbanneU1206 France Institute of Medical Robotics School of Biomedical Engineering Shanghai Jiao Tong University Shanghai China

Training convolutional neural networks (CNNs) for segmentation of pulmonary airway, artery, and vein is challenging due to sparse supervisory signals caused by the severe class imbalance between tubular targets and background. We present a CNNs-based method for accurate airway and artery-vein segmentation in non-contrast computed tomography. It enjoys superior sensitivity to tenuous peripheral bronchioles, arterioles, and venules. The method first uses a feature recalibration module to make the best use of features learned from the neural networks. Spatial information of features is properly integrated to retain relative priority of activated regions, which benefits the subsequent channel-wise recalibration. Then, attention distillation module is introduced to reinforce representation learning of tubular objects. Fine-grained details in high-resolution attention maps are passing down from one layer to its previous layer recursively to enrich context. Anatomy prior of lung context map and distance transform map is designed and incorporated for better artery-vein differentiation capacity. Extensive experiments demonstrated considerable performance gains brought by these components. Compared with state-of-the-art methods, our method extracted much more branches while maintaining competitive overall segmentation performance. Codes and models are available at http://***/News/56. © 2020, CC BY.

关键词： Computerized tomography

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Pulsar candidate selection using ensemble networks for FAST drift-scan survey

arXiv

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arXiv 2019年

作者： Wang, Hongfeng Zhu, Weiwei Guo, Ping Li, Di Feng, Sibo Yin, Qian Miao, Chenchen Tao, Zhenzhao Pan, Zhichen Wang, Pei Zheng, Xin Deng, Xiaodan Liu, Zhijie Xie, Xiaoyao Yu, Xuhong You, Shanping Zhang, Hui Image Processing and Pattern Recognition Laboratory College of Information Science and Technology Beijing Normal University Beijing100875 China CAS Key Laboratory of FAST Chinese Academy of Science Beijing100101 China School of Information Management Dezhou University Dezhou253023 China Image Processing and Pattern Recognition Laboratory School of Systems Science Beijing Normal University Beijing100875 China University of Chinese Academy of Sciences Beijing100049 China Key Laboratory of Information and Computing Science Guizhou Province Guizhou Normal University Guiyang550001 China School of Physics and Electronic Science Guizhou Normal University Guiyang550001 China

The Commensal Radio Astronomy Five-hundred-meter Aperture Spherical radio Telescope (FAST) Survey (CRAFTS) utilizes the novel drift-scan commensal survey mode of FAST and can generate billions of pulsar candidate signals. The human experts are not likely to thoroughly examine these signals, and various machine sorting methods are used to aid the classification of the FAST candidates. In this study, we propose a new ensemble classification system for pulsar candidates. This system denotes the further development of the pulsar image-based classification system (PICS), which was used in the Arecibo Telescope pulsar survey, and has been retrained and customized for the FAST drift-scan survey. In this study, we designed a residual network model comprising 15 layers to replace the convolutional neural networks (CNNs) in PICS. The results of this study demonstrate that the new model can sort >96% of real pulsars to belong the top 1% of all candidates and classify > 1.6 million candidates per day using a dual-GPU and 24-core computer. This increased speed and efficiency can help to facilitate real-time or quasi-real-time processing of the pulsar-search data stream obtained from CRAFTS. In addition, we have published the labeled FAST data used in this study online, which can aid in the development of new deep learning techniques for performing pulsar searches. Copyright © 2019, The Authors. All rights reserved.

关键词： Pulsars

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A Hierarchical Model with Pseudoinverse Learning Algorithm Optimazation for Pulsar Candidate Selection

A Hierarchical Model with Pseudoinverse Learning Algorithm O...

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Congress on Evolutionary Computation

作者： Shijia Li Sibo Feng Ping Guo Qian Yin Image Processing and Pattern Recognition Laboratory Beijing Normal University Beijing China

Pulsars search has always been one of the most concerned problem in the field of astronomy. Nowadays, with the development of astronomical instruments and observation technology, the amount of data is getting bigger and bigger. Radio pulsar surveys have generated and will generate vast amounts of data. To handle big data, developing new technologies and frameworks to efficiently and accurately analyze these data become increasing urgent. The number of positive and negative samples in pulsar candidate data set is very unbalanced, if we only use these a few positive samples to train a deep neural network (DNN), the trained DNN is prone because of the problem of overfitting and will affect the generalization ability. Motivated by the mixtures of experts network architecture, we proposed a hierarchical model for pulsar candidate selection which assembles a set of trained base classifiers. Moreover, training a neural network always takes a lot of time because of using gradient descent (GD) based algorithm. In this work, we utilize the pseudoinverse learning algorithm instead of GD based algorithm to train proposed model. With the designed network architecture and adopted training algorithm, our model has the advantages not only with high steady-state precision but also good generalization performance.

关键词： Matrix decomposition Training Big Data Neural networks Task analysis Decoding Machine learning

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EEG-Based Brain-Computer Interfaces Are Vulnerable to Backdoor Attacks

arXiv

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arXiv 2020年

作者： Meng, Lubin Huang, Jian Zeng, Zhigang Jiang, Xue Yu, Shan Jung, Tzyy-Ping Lin, Chin-Teng Chavarriaga, Ricardo Wu, Dongrui Ministry of Education Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China Brainnetome Center National Laboratory of Pattern Recognition Institute of Automation Chinese Academy of Sciences Beijing China La Jolla CA United States Center for Advanced Neurological Engineering Institute of Engineering in Medicine Ucsd La Jolla CA United States Centre of Artificial Intelligence Faculty of Engineering and Information Technology University of Technology Sydney Australia Zhaw DataLab Zürich University of Applied Sciences Winterthur8401 Switzerland

Research and development of electroencephalogram (EEG) based brain-computer interfaces (BCIs) have advanced rapidly, partly due to deeper understanding of the brain and wide adoption of sophisticated machine learning approaches for decoding the EEG signals. However, recent studies have shown that machine learning algorithms are vulnerable to adversarial attacks. This article proposes to use narrow period pulse for poisoning attack of EEG-based BCIs, which is implementable in practice and has never been considered before. One can create dangerous backdoors in the machine learning model by injecting poisoning samples into the training set. Test samples with the backdoor key will then be classified into the target class specified by the attacker. What most distinguishes our approach from previous ones is that the backdoor key does not need to be synchronized with the EEG trials, making it very easy to implement. The effectiveness and robustness of the backdoor attack approach is demonstrated, highlighting a critical security concern for EEG-based BCIs and calling for urgent attention to address it. Copyright © 2020, The Authors. All rights reserved.

关键词： Electroencephalography

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