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Surrogate-Assisted Multiobjective Gene Selection for Cell Classification from Large-Scale Single-Cell RNA Sequencing Data

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IEEE Transactions on Evolutionary Computation 2025年第3期29卷 601-615页

作者： Lin, Jianqing He, Cheng Jiang, Hanjing Huang, Yabing Jin, Yaochu Huazhong University of Science and Technology Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China School of Artificial Intelligence and Automation Wuhan430074 China Huazhong University of Science and Technology State Key Laboratory of Advanced Electromagnetic Technology School of Electrical and Electronic Engineering Wuhan430074 China Renmin Hospital Department of Pathology Wuhan University Wuhan430060 China Westlake University Trustworth and General Artificial Intelligence Laboratory School of Engineering Hangzhou310030 China

Accurate cell classification is crucial but expensive for large-scale single-cell RNA sequencing (scRNA-seq) analysis. Gene selection (GS) emerges as a pivotal technique in identifying gene subsets of scRNA-seq for classification accuracy improvement and gene scale reduction. Nevertheless, the rising scale of scRNA-seq data presents challenges to existing GS methods regarding performance and computational time. Thus, we propose a surrogate-assisted evolutionary algorithm for multiobjective GS to address these deficiencies. An innovative two-phase initialization method is proposed to select sparse solutions to provide preliminary insights into gene contributions. Then, a binary competitive swarm optimizer is proposed for effective global search, where a local search method is embedded to eliminate irrelevant genes for efficiency consideration. Additionally, a surrogate model is adopted to forecast classification accuracy efficiently and substitutes part of the computationally expensive classification process. Experiments are conducted on eight large-scale scRNA-seq datasets with more than 20,000 genes. The effectiveness of the proposed GS method for scRNA-seq cell classification compared with eight state-of-the-art methods is validated. Gene expression analysis results of selected genes further validated the significance of the genes selected by the proposed method in the classification of scRNA-seq data. © 1997-2012 IEEE.

关键词： Gene expression

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UMIT: Unifying Medical Imaging Tasks via Vision-Language Models

arXiv

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arXiv 2025年

作者： Yu, Haiyang Yi, Siyang Niu, Ke Zhuo, Minghan Li, Bin Shanghai Key Laboratory of Intelligent Information Processing School of Computer Science Fudan University China

With the rapid advancement of deep learning, particularly in the field of medical image analysis, an increasing number of Vision-Language Models (VLMs) are being widely applied to solve complex health and biomedical challenges. However, existing research has primarily focused on specific tasks or single modalities, which limits their applicability and generalization across diverse medical scenarios. To address this challenge, we propose UMIT, a unified multi-modal, multi-task VLM designed specifically for medical imaging tasks. UMIT is able to solve various tasks, including visual question answering, disease detection, and medical report generation. In addition, it is applicable to multiple imaging modalities (e.g., X-ray, CT and PET), covering a wide range of applications from basic diagnostics to complex lesion analysis. Moreover, UMIT supports both English and Chinese, expanding its applicability globally and ensuring accessibility to healthcare services in different linguistic contexts. To enhance the model’s adaptability and task-handling capability, we design a unique two-stage training strategy and fine-tune UMIT with designed instruction templates. Through extensive empirical evaluation, UMIT outperforms previous methods in five tasks across multiple datasets. The performance of UMIT indicates that it can significantly enhance diagnostic accuracy and workflow efficiency, thus providing effective solutions for medical imaging applications. The code and adopted datasets are available at https://***/dzosamu/UMIT/tree/main. © 2025, CC0.

关键词： Visual languages

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Active RIS aided SWIPT secure communication system with partial CSI

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Journal of Communications and Networks 2025年第2期27卷 70-77页

作者： Xiaojia Chen Chunlong He Xingquan Li Guangdong Key Laboratory of Intelligent Information Processing Shenzhen University Shenzhen 518060 China School of Microelectronics Shenzhen Institute of Information Technology Shenzhen 518060 China

The effectiveness of passive reconfigurable intelligent surface (RIS)-assisted simultaneous wireless information and power transfer (SWIPT) may be limited by significant path loss. Active RIS addresses the “multiplicative fading” observed in traditional passive RIS systems. However, the absence of a radio frequency chain in the RIS poses challenges in acquiring necessary channel state information (CSI) at the base station (BS). We investigates an active RIS-assisted SWIPT system with partial CSI. By optimizing transmit and reflection beamforming concurrently, the RIS and BS minimize power consumption while meeting requirements for information and energy receivers, along with a rate outage constraint for the Eve. Simulation results show that active RIS approach offers a promising solution to mitigate power loss and improve overall SWIPT system performance.

关键词： Simultaneous wireless information and power transfer Reconfigurable intelligent surfaces Array signal processing Noise Channel estimation Reflection Power demand Optimization Vectors Correlation

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PHT-CAD: Efficient CAD Parametric Primitive Analysis with Progressive Hierarchical Tuning

arXiv

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arXiv 2025年

作者： Niu, Ke Chen, Yuwen Yu, Haiyang Chen, Zhuofan Que, Xianghui Li, Bin Xue, Xiangyang Shanghai Key Laboratory of Intelligent Information Processing School of Computer Science Fudan University China

Computer-Aided Design (CAD) plays a pivotal role in industrial manufacturing, yet 2D Parametric Primitive Analysis (PPA) remains underexplored due to two key challenges: structural constraint reasoning and advanced semantic understanding. To tackle these challenges, we first propose an Efficient Hybrid Parametrization (EHP) for better representing 2D engineering drawings. EHP contains four types of atomic component (i.e., point, line, circle, and arc). Additionally, we propose PHT-CAD, a novel 2D PPA framework that harnesses the modality alignment and reasoning capabilities of Vision-Language Models (VLMs) for precise engineering drawing analysis. In PHT-CAD, we introduce four dedicated regression heads to predict corresponding atomic components. To train PHT-CAD, a three-stage training paradigm Progressive Hierarchical Tuning (PHT) is proposed to progressively enhance PHT-CAD’s capability to perceive individual primitives, infer structural constraints, and align annotation layers with their corresponding geometric representations. Considering that existing datasets lack complete annotation layers and real-world engineering drawings, we introduce ParaCAD, the first large-scale benchmark that explicitly integrates both the geometric and annotation layers. ParaCAD comprises over 10 million annotated drawings for training and 3,000 real-world industrial drawings with complex topological structures and physical constraints for test. Extensive experiments demonstrate the effectiveness of PHT-CAD and highlight the practical significance of ParaCAD in advancing 2D PPA research. The code and adopted datasets are available at https://***/yuwen-chen616/ PHT-CAD. Copyright © 2025, The Authors. All rights reserved.

关键词： Semantics

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Collaborative Pushing and Grasping in Complex Scenarios via a Generator-Evaluator Network with Multiple Action Primitives 17th

Collaborative Pushing and Grasping in Complex Scenarios vi...

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17th International Conference on intelligent Robotics and Applications, ICIRA 2024

作者： Zuo, Guoyu Wang, Zihao Luo, Yongkang Yu, Shuangyue Zhao, Min School of Information Science and Technology Beijing University of Technology Beijing100124 China Beijing Key Laboratory of Computing Intelligence and Intelligent Systems Beijing100124 China The State Key Laboratory of Multimodal Artificial Intelligence Systems Institute of Automation Chinese Academy of Sciences Beijing100190 China

ISBN: (纸本)9789819607761

As robotic technologies advance, robotic arm manipulation tasks in complex environments become increasingly important. This paper presents a new collaborative pushing and grasping strategy to address two major challenges robotic arms encounter in complex environments: invisibility and tight enclosure of target objects. We propose a generator-evaluator network architecture based on multiple action primitives, incorporating hierarchical reinforcement learning and Double DQN techniques to optimize the operational efficiency of the robotic arm. By introducing a new action primitive to prioritize pushing operations around the topmost objects in space, our approach effectively reveals and locates obscured target objects. Additionally, utilizing the Spatial Correlation Test (SCT), our method explores all possible collision-free operational positions in the action space, selecting the optimal position from among them. Experimental results demonstrate that our approach achieves high efficiency and success rates in scenarios with randomly distributed objects, objects tightly enclosed by others, and invisible objects. This strategy enhances the speed and accuracy of tasks and improves the robot’s adaptability to complex environments. © The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2025.

关键词： Robotic arms

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Chemical environment adaptive learning for optical band gap prediction of doped graphitic carbon nitride nanosheets

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Neural computing and Applications 2025年第5期37卷 3287-3301页

作者： Chen, Chen Xu, Enze Yang, Defu Yan, Chenggang Wei, Tao Chen, Hanning Wei, Yong Chen, Minghan Intelligent Information Processing Laboratory Hangzhou Dianzi University Hangzhou China Department of Computer Science Wake Forest University Winston-SalemNC United States Department of Chemical Engineering Howard University WashingtonDC United States Texas Advanced Computing Center University of Texas at Austin AustinTX United States Department of Computer Science & Information Systems University of North Georgia DahlonegaGA United States

This study presents a new machine learning algorithm, named Chemical Environment Graph Neural Network (ChemGNN), designed to accelerate materials property prediction and advance new materials discovery. Graphitic carbon nitride (g-C3N4) and its doped variants have gained significant interest for their potential as optical materials. Accurate prediction of their band gaps is crucial for practical applications;however, traditional quantum simulation methods are computationally expensive and challenging to explore the vast space of possible doped molecular structures. The proposed ChemGNN leverages the learning ability of current graph neural networks (GNNs) to satisfactorily capture the characteristics of atoms' chemical environment underlying complex molecular structures. Our experimental results demonstrate more than 100% improvement in band gap prediction accuracy over existing GNNs on g-C3N4. Furthermore, the general ChemGNN model can precisely foresee band gaps of various doped g-C3N4 structures, making it a valuable tool for performing high-throughput prediction in materials design and development. © The Author(s) 2024.

关键词： Graphitic Carbon Nitride

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LLaMA-Unidetector: An LLaMA-Based Universal Framework for Open-Vocabulary Object Detection in Remote Sensing Imagery

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IEEE Transactions on Geoscience and Remote Sensing 2025年 63卷

作者： Xie, Jianlin Wang, Guanqun Zhang, Tong Sun, Yikang Chen, He Zhuang, Yin Li, Jun Beijing100081 China Peking University National Key Laboratory for Multimedia Information Processing Beijing100871 China China University of Geosciences School of Computer Science Hubei Key Laboratory of Intelligent Geo-Information Processing Wuhan430078 China

The object detection is a crucial task in the computer vision for remote sensing applications. However, the reliance of traditional methods on predefined and trained object categories limits their applicability in open-world scenarios. A key challenge in open-vocabulary object detection lies in accurately identifying unseen objects. Existing approaches often focus solely on detecting object locations, struggling to recognize the categories of previously unseen targets. To address this issue, we propose a novel benchmark, where models are trained on known base classes and evaluated on their performance in detecting and recognizing unseen or novel classes. To this end, we introduce LLaMA-Unidetector, a universal framework that incorporates textual information into a closed-set detector, enabling the generalization to open-set scenarios. Our LLaMA-Unidetector leverages a decoupled learning strategy that separates localization and recognition. In the first stage, a class-agnostic detector identifies objects, distinguishing only between foreground and background. In the second stage, the detected foreground objects are passed through TerraOV-LLM, a multimodal large language model (MLLM), for recognition, utilizing the strong generalization capabilities of large language models to infer the correct categories. We propose a self-built vision question answering (VQA) remote sensing dataset, TerraVQA, and conduct extensive experiments on the NWPU-VHR10, DOTA1.0, and DIOR datasets. The LLaMA-Unidetector achieves impressive results, with a performance of 75.46% AP, 50.22% AP, and 51.38% AP on the zero-shot detection benchmarks for the NWPU-VHR10, DOTA1.0, and DIOR datasets, respectively. © 1980-2012 IEEE.

关键词： Object detection

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Emotional Knowledge Self-Distillation in Dialogue

Emotional Knowledge Self-Distillation in Dialogue

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2025 IEEE International Conference on Acoustics, Speech, and Signal processing, ICASSP 2025

作者： Jian, Zhongquan Wang, Yancheng Wu, Weichao Yao, Junfeng Wang, Meihong Wu, Qingqiang School of Informatics Xiamen University Xiamen China School of Film Xiamen University Xiamen China School of Computing and Data Science Xiamen University Malaysia Selangor Malaysia School of Mechanics and Civil Engineering China University of Mining & Technology Beijing China Xiamen Key Laboratory of Intelligent Storage and Computing School of Informatics Xiamen University Xiamen China Key Laboratory of Digital Protection and Intelligent Processing of Intangible Cultural Heritage of Fujian and Taiwan Ministry of Culture and Tourism Xiamen China

ISBN: (纸本)9798350368741

Recognizing emotions in dialogues is vital for effective human-computer interaction, yet remains a challenging task in Natural Language processing (NLP). Previous studies in Emotion Recognition in Conversation (ERC) have primarily focused on contextual features, while overlooking the importance of emotional features in emotion recognition. To address this gap, we focus on the role of emotional features in ERC and propose a novel method, Emotional Knowledge Self-Distillation (EmoKSD1), to enhance the model's emotional sensitivity. In EmoKSD, utterances are enriched with implicit 〈mask〉 tokens to represent conveyed emotions, allowing the distillation of emotional knowledge from explicit emotional tokens to implicit 〈mask〉 tokens, thereby enhancing the model's ability to perceive subtle emotions within the dialogue. Through thorough evaluations on two public ERC datasets (i.e., IEMOCAP and MELD) using proposed coarse-grained utterance distillation and fine-grained token distillation techniques, EmoKSD demonstrates superior performance compared to existing methods, highlighting the significance of emotional features in ERC. © 2025 IEEE.

关键词： Dialogue System Emotion Recognition in Conversation Knowledge Distillation Natural Language processing

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Kernel-learning parameter prediction and evaluation in algebraic multigrid method for several PDEs

arXiv

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arXiv 2025年

作者： Zhang, Juan Luo, Junyue Zhang, Fangfang Yue, Xiaoqiang Hunan Key Laboratory for Computation and Simulation in Science and Engineering Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education School of Mathematics and Computational Science Xiangtan University Hunan Xiangtan411105 China

This paper explores the application of kernel learning methods for parameter prediction and evaluation in the Algebraic Multigrid Method (AMG), focusing on several Partial Differential Equation (PDE) problems. AMG is an efficient iterative solver for large-scale sparse linear systems, particularly those derived from elliptic and parabolic PDE discretizations. However, its performance heavily relies on numerous parameters, which are often set empirically and are highly sensitive to AMG’s effectiveness. Traditional parameter optimization methods are either computationally expensive or lack theoretical support. To address this, we propose a Gaussian Process Regression (GPR)-based strategy to optimize AMG parameters and introduce evaluation metrics to assess their effectiveness. Trained on small-scale datasets, GPR predicts nearly optimal parameters, bypassing the time-consuming parameter sweeping process. We also use kernel learning techniques to build a kernel function library and determine the optimal kernel function through linear combination, enhancing prediction accuracy. In numerical experiments, we tested typical PDEs such as the constant-coefficient Poisson equation, variable-coefficient Poisson equation, diffusion equation, and Helmholtz equation. Results show that GPR-predicted parameters match grid search results in iteration counts while significantly reducing computational time. A comprehensive analysis using metrics like mean squared error, prediction interval coverage, and Bayesian information criterion confirms GPR’s efficiency and reliability. These findings validate GPR’s effectiveness in AMG parameter optimization and provide theoretical support for AMG’s practical application. © 2025, CC BY.

关键词： Poisson equation

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AGCL: Aspect Graph Construction and Learning for Aspect-level Sentiment Classification 31

AGCL: Aspect Graph Construction and Learning for Aspect-leve...

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31st International Conference on Computational Linguistics, COLING 2025

作者： Jian, Zhongquan Wu, Daihang Wang, Shaopan Wang, Yancheng Yao, Junfeng Wang, Meihong Wu, Qingqiang Institute of Artificial Intelligence Xiamen University China School of Informatics Xiamen University China School of Film Xiamen University China College of Management Mahidol University Thailand School of Computing and Data Science Xiamen University Malaysia Malaysia Key Laboratory of Digital Protection and Intelligent Processing of Intangible Cultural Heritage of Fujian and Taiwan Ministry of Culture and Tourism Xiamen University China Xiamen Key Laboratory of Intelligent Storage and Computing School of Informatics Xiamen University China

ISBN: (纸本)9798891761964

Prior studies on Aspect-level Sentiment Classification (ALSC) emphasize modeling interrelationships among aspects and contexts but overlook the crucial role of aspects themselves as essential domain knowledge. To this end, we propose AGCL, a novel Aspect Graph Construction and Learning method, aimed at furnishing the model with finely tuned aspect information to bolster its task-understanding ability. AGCL's pivotal innovations reside in Aspect Graph Construction (AGC) and Aspect Graph Learning (AGL), where AGC harnesses intrinsic aspect connections to construct the domain aspect graph, and then AGL iteratively updates the introduced aspect graph to enhance its domain expertise, making it more suitable for the ALSC task. Hence, this domain aspect graph can serve as a bridge connecting unseen aspects with seen aspects, thereby enhancing the model's generalization capability. Experiment results on three widely used datasets demonstrate the significance of aspect information for ALSC and highlight AGL's superiority in aspect learning, surpassing state-of-the-art baselines greatly. Code is available at https://***/jian-projects/agcl. © 2025 Association for Computational Linguistics.

关键词： Contrastive Learning

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