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Correction: Self-orthogonal codes over a non-unital ring and combinatorial matrices

Designs, Codes and Cryptography 2023年第2期91卷 691-691页

作者： Shi, Minjia Wang, Shukai Kim, Jon-Lark Solé, Patrick Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Mathematical Sciences Anhui University Hefei China School of Mathematical Sciences Anhui University Hefei China Department of Mathematics Sogang University Seoul South Korea Aix Marseille Univ CNRS Centrale Marseille I2M Marseilles France

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New algorithm of target classification in polarimetric SAR

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Journal of Systems Engineering and Electronics 2008年第2期000卷

作者： Wang Yang Lu Jiaguo Wu Xianliang Wang Yang (Key Lab of Intelligent Computing & Signal Processing of Ministry of Education Anhui Univ. Heifei 230039 P. R. China The 38th Research Inst. China Electronic Technology Corporation Hefei 230031 P. R. China) Lu Jiaguo (The 38th Research Inst. China Electronic Technology Corporation Hefei 230031 P. R. China) Wu Xianliang (Key Lab of Intelligent Computing & Signal Processing of Ministry of Education Anhui Univ. Heifei 230039 P. R. China)

The different approaches used for target decomposition (TD) theory in radar polarimetry are reviewed and three main types of theorems are introduced: those based on Mueller matrix, those using an eigenvector analysis of the coherency matrix, and those employing coherent decomposition of the scattering matrix. Support vector machine (SVM), as a novel approach in pattern recognition, has demonstrated success in many fields. A new algorithm of target classification, by combining target decomposition and the support vector machine, is *** conduct the experiment, the polarimetric synthetic aperture radar (SAR) data are used. Experimental results show that it is feasible and efficient to target classification by applying target decomposition to extract scattering mechanisms, and the effects of kernel function and its parameters on the classification efficiency are significant.

关键词： polarimetric synthetic aperture radar target decomposition support vector machine target classifi-cation kernel function.

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Kinetic-molecular theory optimization algorithm based on Kent chaotic mapping

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AIP Conference Proceedings 2017年第1期1864卷

作者： Huguang Gong Chaodong Fan Bo Ouyang 1Key Laboratory for Intelligent Computing & Information Processing of the Ministry of Education (Xiangtan University) Xiangtan Hunan 411105 China 2Hunan 2011 Collaborative Innovation Center of the Change of Wind Power and Electrical Energy Xiangtan Hunan 411105 China

Aiming at the shortage that Kinetic-molecular theory optimization algorithm (KMTOA) is more likely to show premature convergence and the accuracy of searching for the optimum needs to be improved, a Kinetic-molecular theory optimization algorithm (KCKMTOA) based on Kent chaotic mapping was proposed. The algorithm utilizes the characteristics of chaotic algorithm, such as ergodicity, non-periodicity, randomness etc. When algorithm falls into the local optimum, Kent chaotic mapping is used to perform chaotic search around the local optimum to replace partial particles of original particle swarm in order to jump out from the local optimum to find the global optimum. As the algorithm is carried out, the radius of chaotic search decreases linearly, so as to ensure the precision of searching and speed of the algorithm. 20 classical test functions are taken into consideration in simulation experiments. After making a comprehensive comparison for the performance of searching for the optimum of DE, GA, QPSO, KMTOA and KCKMTOA in 20 classical test functions, the results of experiments show that this algorithm has obvious advantages in precision, speed and robustness optimization etc.

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Drug3D-DTI: Improved Drug-target Interaction Prediction by Incorporating Spatial Information of Small Molecules

Drug3D-DTI: Improved Drug-target Interaction Prediction by I...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Zhirui Liao Xiaodi Huang Hiroshi Mamitsuka Shanfeng Zhu School of Computer Science Fudan University Shanghai China Institute of Artificial Intelligence Biomedicine Nanjing University Nanjing China School of Computing Mathematics and Engineering Charles Sturt University Albury NSW Australia Bioinformatics Center Institute for Chemical Research Kyoto University Uji Kyoto Japan Institute of Science and Technology for Brain-Inspired Intelligence Fudan University Shanghai China Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University) Ministry of Education China MOE Frontiers Center for Brain Science Fudan University Shanghai China Zhangjiang Fudan International Innovation Center Shanghai China Shanghai Key Lab of Intelligent Information Processing Fudan University Shanghai China

ISBN: (纸本)9781665429825

A number of machine learning (ML) approaches for drug discovery have been available that rely only on sequential (1D) and planar (2D) information without effectively using the 3D information for generating features of drugs. However, 3D information of small molecules can reflect relative position of atoms more directly, which affects molecular properties. In this work, we present a new deep learning model called Drug3D-DTI for drug-target interaction prediction. Drug3D-DTI takes advantage of molecular spatial information, i.e., atom proximity in three-dimensional (3D) structures. We comprehensively evaluated the performance of Drug3D-DTI on two datasets with two tasks of regression and classification. In particular, we compared Drug3D-DTI with several existing methods including the two cutting-edge methods for compound-protein interaction prediction. From the experimental results, Drug3D-DTI clearly outperformed other methods under all settings. Further, this performance improvement was validated by ablation experiments and a case study. The implementation of Drug3D-DTI is available at (https://***/zhiruiliao/Drug3D-DTI).

关键词： Drugs Proteins Deep learning Solid modeling Three-dimensional displays Conferences Predictive models

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Laplacian normalization and random walk on heterogeneous networks for disease-gene prioritization

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Computational biology and chemistry 2015年 57卷 21-8页

作者： Zhi-Qin Zhao Guo-Sheng Han Zu-Guo Yu Jinyan Li Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University Xiangtan Hunan 411105 China. Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University Xiangtan Hunan 411105 China School of Mathematical Sciences Queensland University of Technology GPO Box 2434 Brisbane Q4001 Australia. Electronic address: yuzg1970@***. Advanced Analytics Institute & Centre for Health Technologies University of Technology Sydney Broadway NSW 2007 Australia. Electronic address: jinyan.li@uts.edu.au.

Random walk on heterogeneous networks is a recently emerging approach to effective disease gene prioritization. Laplacian normalization is a technique capable of normalizing the weight of edges in a network. We use this technique to normalize the gene matrix and the phenotype matrix before the construction of the heterogeneous network, and also use this idea to define the transition matrices of the heterogeneous network. Our method has remarkably better performance than the existing methods for recovering known gene-phenotype relationships. The Shannon information entropy of the distribution of the transition probabilities in our networks is found to be smaller than the networks constructed by the existing methods, implying that a higher number of top-ranked genes can be verified as disease genes. In fact, the most probable gene-phenotype relationships ranked within top 3 or top 5 in our gene lists can be confirmed by the OMIM database for many cases. Our algorithms have shown remarkably superior performance over the state-of-the-art algorithms for recovering gene-phenotype relationships. All Matlab codes can be available upon email request.

关键词： Disease genes and phenotypes Heterogeneous network Laplacian normalization Leave-one-out cross-validation Random walk with restart Shannon information entropy

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Identification of pre-microRNAs by characterizing their sequence order evolution information and secondary structure graphs

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BMC bioinformatics 2018年第Suppl 19期19卷 521页

作者： Yuanlin Ma Zuguo Yu Guosheng Han Jinyan Li Vo Anh Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering Xiangtan University Hunan 411105 China. Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering Xiangtan University Hunan 411105 China. yuzuguo@***. School of Electrical Engineering and Computer Science Queensland University of Technology GPO Box 2434 Brisbane Q4001 Australia. yuzuguo@***. Advanced Analytics Institute Faculty of Engineering & IT University of Technology Sydney P.O Box 123 Broadway NSW 2007 Australia. School of Mathematical Sciences Queensland University of Technology GPO Box 2434 Brisbane Q4001 Australia.

BACKGROUND:Distinction between pre-microRNAs (precursor microRNAs) and length-similar pseudo pre-microRNAs can reveal more about the regulatory mechanism of RNA biological processes. Machine learning techniques have been widely applied to deal with this challenging problem. However, most of them mainly focus on secondary structure information of pre-microRNAs, while ignoring sequence-order information and sequence evolution information. RESULTS:We use new features for the machine learning algorithms to improve the classification performance by characterizing both sequence order evolution information and secondary structure graphs. We developed three steps to extract these features of pre-microRNAs. We first extract features from PSI-BLAST profiles and Hilbert-Huang transforms, which contain rich sequence evolution information and sequence-order information respectively. We then obtain properties of small molecular networks of pre-microRNAs, which contain refined secondary structure information. These structural features are carefully generated so that they can depict both global and local characteristics of pre-microRNAs. In total, our feature space covers 591 features. The maximum relevance and minimum redundancy (mRMR) feature selection method is adopted before support vector machine (SVM) is applied as our classifier. The constructed classification model is named MicroRNA -NHPred. The performance of MicroRNA -NHPred is high and stable, which is better than that of those state-of-the-art methods, achieving an accuracy of up to 94.83% on same benchmark datasets. CONCLUSIONS:The high prediction accuracy achieved by our proposed method is attributed to the design of a comprehensive feature set on the sequences and secondary structures, which are capable of characterizing the sequence evolution information and sequence-order information, and global and local information of pre-microRNAs secondary structures. MicroRNA -NHPred is a valuable method for pre-microRNAs iden

关键词： Hibert-Huang transform Network PSI-BLAST profiles Pre-microRNA SVM mRMR

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Corrigendum to “Integrated production and transportation on parallel batch machines to minimize total weighted delivery time” [Computers and Operations Research Volume 102, pages 39–51]

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Computers & Operations Research 2019年 105卷 248-248页

作者： Zhao-hong Jia Xue-xue Zhuo Joseph Y.-T. Leung Kai Li Key Lab of Intelligent Computing and Signal Processing of Ministry of Education Anhui University Hefei Anhui 230039 P.R. China Department of Computer Science New Jersey Institute of Technology Newark NJ 07102 USA School of Management Hefei University of Technology Hefei Anhui 230009 P.R. China

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Multifractal analysis of weighted networks by a modified sandbox algorithm

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Scientific reports 2015年第1期5卷 17628页

作者： Yu-Qin Song Jin-Long Liu Zu-Guo Yu Bao-Gen Li Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University Xiangtan Hunan 411105 China. College of Science Hunan University of technology Zhuzhou Hunan 412007 China. School of Mathematical Sciences Queensland University of Technology Brisbane Q4001 Australia.

Complex networks have attracted growing attention in many fields. As a generalization of fractal analysis, multifractal analysis (MFA) is a useful way to systematically describe the spatial heterogeneity of both theoretical and experimental fractal patterns. Some algorithms for MFA of unweighted complex networks have been proposed in the past a few years, including the sandbox (SB) algorithm recently employed by our group. In this paper, a modified SB algorithm (we call it SBw algorithm) is proposed for MFA of weighted networks. First, we use the SBw algorithm to study the multifractal property of two families of weighted fractal networks (WFNs): "Sierpinski" WFNs and "Cantor dust" WFNs. We also discuss how the fractal dimension and generalized fractal dimensions change with the edge-weights of the WFN. From the comparison between the theoretical and numerical fractal dimensions of these networks, we can find that the proposed SBw algorithm is efficient and feasible for MFA of weighted networks. Then, we apply the SBw algorithm to study multifractal properties of some real weighted networks - collaboration networks. It is found that the multifractality exists in these weighted networks, and is affected by their edge-weights.

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Human-multimodal deep learning collaboration in ‘precise’ diagnosis of lupus erythematosus subtypes and similar skin diseases

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Journal of the European Academy of Dermatology and Venereology 2024年第12期38卷 2268-2279页

作者： Li, Qianwen Yang, Zhi Chen, Kaili Zhao, Ming Long, Hai Deng, Yueming Hu, Haoran Jia, Chen Wu, Meiyu Zhao, Zhidan Zhu, Huan Zhou, Suqing Zhao, Mingming Cao, Pengpeng Zhou, Shengnan Song, Yang Tang, Guishao Liu, Juan Jiang, Jiao Liao, Wei Zhou, Wenhui Yang, Bingyi Xiong, Feng Zhang, Suhan Gao, Xiaofei Jiang, Yiqun Zhang, Wei Zhang, Bo He, Yan-ling Ran, Liwei Zhang, Chunlei Wu, Wenting Suolang, Quzong Luo, Hanhuan Kang, Xiaojing Wu, Caoying Jin, Hongzhong Chen, Lei Guo, Qing Gui, Guangji Li, Shanshan Si, Henan Guo, Shuping Liu, Hong-Ye Liu, Xiguang Ma, Guo-Zhang Deng, Danqi Yuan, Limei Lu, Jianyun Zeng, Jinrong Jiang, Xian Lyu, Xiaoyan Chen, Liuqing Hu, Bin Tao, Juan Liu, Yuhao Wang, Gang Zhu, Guannan Yao, Zhirong Xu, Qianyue Yang, Bin Wang, Yu Ding, Yan Yang, Xianxu Kai, Hu Wu, Haijing Lu, Qianjin Department of Dermatology Hunan Key Laboratory of Medical Epigenomics The Second Xiangya Hospital of Central South University Changsha China Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University Xiangtan China Department of Dermatology Hunan Children's Hospital Changsha China Institute of Dermatology Chinese Academy of Medical Sciences and Peking Union Medical College Nanjing China Department of Dermatology Beijing Chao-Yang Hospital Capital Medical University Beijing China Department of Dermatology Peking University Third Hospital Beijing China Department of Dermatology People's Hospital of Tibet Autonomous Region Lhasa China Department of Dermatology People's Hospital of Xinjiang Uygur Autonomous Region Urumqi China Department of Dermatology State Key Laboratory of Complex Severe and Rare Diseases Peking Union Medical College Hospital Chinese Academy of Medical Science and Peking Union Medical College Beijing China Department of Dermatology Sun Yat-Sen Memorial Hospital Sun Yat-Sen University Guangzhou China Department of Dermatology The First Bethune Hospital of Jilin University Changchun China Department of Dermatology The First Hospital of Shanxi Medical University Taiyuan China Department of Dermatology The Hei Long Jiang Provincial Hospital Harbin China Department of Dermatology The Second Affiliated Hospital of Kunming Medical University Kunming China Department of Dermatology The Third Xiangya Hospital Central South University Changsha China Department of Dermatology West China Hospital Sichuan University Chengdu China Department of Dermatology Wuhan No. 1 Hospital Wuhan China Department of Dermatology Wuhan Union Hospital of China Wuhan China Department of Dermatology Xijing Hospital Xi'an China Department of Dermatology Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine Shanghai China Dermatology Hospital of Southern Medical University Guangzhou Chin

Background: Lupus erythematosus (LE) is a spectrum of autoimmune diseases. Due to the complexity of cutaneous LE (CLE), clinical skin image-based artificial intelligence is still experiencing difficulties in distinguishing subtypes of LE. Objectives: We aim to develop a multimodal deep learning system (MMDLS) for human-AI collaboration in diagnosis of LE subtypes. Methods: This is a multi-centre study based on 25 institutions across China to assist in diagnosis of LE subtypes, other eight similar skin diseases and healthy subjects. In total, 446 cases with 800 clinical skin images, 3786 multicolor-immunohistochemistry (multi-IHC) images and clinical data were collected, and EfficientNet-B3 and ResNet-18 were utilized in this study. Results: In the multi-classification task, the overall performance of MMDLS on 13 skin conditions is much higher than single or dual modals (Sen = 0.8288, Spe = 0.9852, Pre = 0.8518, AUC = 0.9844). Further, the MMDLS-based diagnostic-support help improves the accuracy of dermatologists from 66.88% ± 6.94% to 81.25% ± 4.23% (p = 0.0004). Conclusions: These results highlight the benefit of human-MMDLS collaborated framework in telemedicine by assisting dermatologists and rheumatologists in the differential diagnosis of LE subtypes and similar skin diseases. © 2024 European Academy of Dermatology and Venereology.

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Deterministic realization of collective measurements via photonic quantum walks

arXiv

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arXiv 2017年

作者： Hou, Zhibo Tang, Jun-Feng Shang, Jiangwei Zhu, Huangjun Li, Jian Yuan, Yuan Wu, Kang-Da Xiang, Guo-Yong Li, Chuan-Feng Guo, Guang-Can Key Laboratory of Quantum Information University of Science and Technology of China CAS Hefei230026 China Synergetic Innovation Center of Quantum Information and Quantum Physics University of Science and Technology of China Hefei230026 China Naturwissenschaftlich-Technische Fakultät Universität Siegen Siegen57068 Germany Beijing Key Laboratory of Nanophotonics Ultrafine Optoelectronic Systems School of Physics Beijing Institute of Technology Beijing100081 China Institute for Theoretical Physics University of Cologne Cologne50937 Germany Department of Physics Center for Field Theory and Particle Physics Fudan University Shanghai200433 China Institute for Nanoelectronic Devices and Quantum Computing Fudan University Shanghai200433 China State Key Laboratory of Surface Physics Fudan University Shanghai200433 China Collaborative Innovation Center of Advanced Microstructures Nanjing210093 China Institute of Signal Processing Transmission Nanjing University of Posts and Telecommunications Nanjing210003 China Key Lab of Broadband Wireless Communication and Sensor Network Technology Nanjing University of Posts and Telecommunications Ministry of Education Nanjing210003 China

Collective measurements on identically prepared quantum systems can extract more information than local measurements, thereby enhancing information-processing efficiency. Although this nonclassical phenomenon has been known for two decades, it has remained a challenging task to demonstrate the advantage of collective measurements in experiments. Here we introduce a general recipe for performing deterministic collective measurements on two identically prepared qubits based on quantum walks. Using photonic quantum walks, we realize experimentally an optimized collective measurement with fidelity 0.9946 without post selection. As an application, we achieve the highest tomographic efficiency in qubit state tomography to date. Our work offers an effective recipe for beating the precision limit of local measurements in quantum state tomography and metrology. In addition, our study opens an avenue for harvesting the power of collective measurements in quantum information processing and for exploring the intriguing physics behind this power. Copyright © 2017, The Authors. All rights reserved.

关键词： Quantum optics

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