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17th IEEE International Conference on Signal Processing, ICSP 2024

作者： Ou, Yingfeng Yang, Xing Zhang, Jian Jian, Caiqing Wang, Lihui College of Computer Science and Technology Guizhou University Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province State Key Laboratory of Public Big Data Engineering Research Center of Text Computing Ministry of Education Guiyang China

ISBN: (纸本)9798350387384

Few-shot learning based methods can address the reliance on large-scale labeled samples in current breast tumor segmentation. However, previous methods typically rely on a few support samples to extract abstract, coarse-grained semantic prototypes, without considering the interaction between support and query data. In this study, we aim to provide each query image with relevant and information-rich support information. By integrating the difficult point selection module and the multi-scale cyclical prototype refinement module, we progressively refine coarse-grained support prototypes into more informative, fine-grained class prototypes, thereby better matching the highly variable breast ultrasound query data. Experiments on two datasets demonstrate that our proposed multi-scale cyclical similarity prototype refinement network (CSPRNet) achieves remarkable improvements compared to previous state-of-the-art methods. Specifically, using ResNet50 as the backbone, we achieve 57.93%/57.92% and 57.58%/59.24% mIoU for 1-shot and 5-shot segmentation, respectively, on public and private datasets, outperforming the suboptimal method by 8.18%/2.55% and 2.77%/4.48%. © 2024 IEEE.

关键词： Ultrasonic imaging

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DFGET: Displacement-Field Assisted Graph Energy Transmitter for Gland Instance Segmentation 17

DFGET: Displacement-Field Assisted Graph Energy Transmitter ...

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17th IEEE International Conference on Signal Processing, ICSP 2024

作者： Jian, Caiqing Qin, Yongbin Wang, Lihui Ye, Chen Cheng, Xinyu Guizhou University Engineering Research Center of Text Computing & Cognitive Intelligence Ministry of Education Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province State Key Laboratory of Public Big Data College of Computer Science and Technology Guiyang China

ISBN: (纸本)9798350387384

Gland instance segmentation is an essential but challenging task in the diagnosis of adenocarcinoma. The existing models usually achieve gland instance segmentation through multi-task learning and boundary loss constraint. However, how to deal with the problems of gland adhesion and inaccurate boundary in segmenting the complex samples remains a challenge. In this work, we propose a novel geometric feature named displacement field (DF), which can represent the geometric information such as shape, size, and orientation of the glands. Based on the explicit constraint of DF, a displacement-field assisted graph energy transmitter (DFGET) framework is proposed for solving the above problems. Using such graph framework, the gland semantic segmentation map and the displacement field of the graph nodes are estimated with two graph network branches. With the constraint of DF, a graph cluster module is presented to improve the intra-class feature consistency and inter-class feature discrepancy, as well as to separate the adherent glands. Extensive comparison and ablation experiments on the GlaS dataset demonstrate the effectiveness of the displacement field and the superiority of DFGET. Compared to the best comparative model, DFGET increases the object-Dice and object-F1 score by 2.27% and 3.11% respectively, while decreases the object-HD by 15.58, achieving state-of-the-art performance, which indicates that DFGET can serve as an auxiliary tool for the diagnosis of adenocarcinoma. © 2024 IEEE.

关键词： Semantic Segmentation

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Self-supervised fast reconstruction method for diffusion MRI based on multi-directional assistance 17

Self-supervised fast reconstruction method for diffusion MRI...

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17th IEEE International Conference on Signal Processing, ICSP 2024

作者： Wu, Yuxin Zhang, Jian Wang, Lihui Cao, Ying Wu, Linhai Wu, Yunjia Ye, Chen Zhu, Yuemin Guizhou University Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province Engineering Research Center of Text Computing & Cognitive Intelligence Ministry of Education State Key Laboratory of Public Big Data College of Computer Science and Technology Guiyang China Univ Lyon Insa Lyon Cnrs Inserm Creatis Umr 5220 U1206 France

ISBN: (纸本)9798350387384

Diffusion MRI (dMRI) is widely used for the detection and diagnosis of various pathologies due to its non-invasive nature. However, its signal acquisition process is relatively slow and susceptible to motions. In order to accelerate reconstruction process, many deep learning-based methods have been developed in recent years to achieve promising results, while most of them are supervised based methods and require fully sampled data which are difficult to obtain in practical applications to train the network. Self-supervised based methods were proposed to deal with this problem to a certain extent, however, they are devoted only to conventional MRI data, ignoring the correlation between the directions of dMRI data. To address this issue, we propose a self-supervised fast reconstruction method for dMRI based on multi-directional assistance. The method better utilizes the information between dMRI data directions by Partition-Replace operation, cleverly constructing data pairs and designing effective self-supervised strategy for bi-directional prediction, which can overcome the problem of data incompleteness and guide the model to reconstruct unsampled signals in spite of the difficulty of acquiring fully sampled data. Experimental results show that our method achieves better reconstruction in the absence of fully sampled data, even with an 8-fold acceleration factor. © 2024 IEEE.

关键词： Self-supervised learning

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Penta-Encoder with medical Transformer for Incomplete Multimodal Learning of Brain Tumor Segmentation 17

Penta-Encoder with Medical Transformer for Incomplete Multim...

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17th IEEE International Conference on Signal Processing, ICSP 2024

作者： Yu, Guohui Wang, Lihui Chen, Qijian Wang, Li Tang, Kun Cheng, Xinyu Zhu, Yuemin Guizhou University Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province Engineering Research Center of Text Computing & Cognitive Intelligence Ministry of Education State Key Laboratory of Public Big Data College of Computer Science and Technology Guiyang China Univ Lyon Insa Lyon Cnrs Inserm Creatis Umr 5220 U1206 Lyon France

ISBN: (纸本)9798350387384

Accurate brain tumor segmentation of magnetic resonance imaging (MRI) images requires the integration of multimodal data in effective collaborative learning. However, clinical scenarios often face missing modalities, significantly impacting segmentation performance. In this paper, we propose the penta-encoder with medical transformer (Penta-MedTrans) for incomplete multimodal learning, which consists of four main components: a modality-specific encoder (MSE), a modality-dynamic encoder (MDE), a multimodal fusion module (MMFM) and a convolutional decoder. The MSE extracts unique features for each modality, while the MDE captures inter-modal semantics to address missing modalities. The MMFM establishes and aligns long-range correlations between modal-invariant features and global semantics of tumor regions. The convolutional decoder generates robust segmentation results by progressively upsampling and fusing modality-invariant features. We extensively validated our method on the BraTS 2020 and BraTS 2021 datasets for brain tumor segmentation. Results showed that our method outperforms SOTA for incomplete multimodal brain tumor segmentation across most subsets. © 2024 IEEE.

关键词： Semantic Segmentation

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Tumor State-Space Network for High and Low Grade Glioma Classification 17

Tumor State-Space Network for High and Low Grade Glioma Clas...

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17th IEEE International Conference on Signal Processing, ICSP 2024

作者： Chen, Qijian Wang, Lihui Deng, Zeyu Wang, Li Ye, Chen Zhu, YueMin Guizhou University Engineering Research Center of Text Computing Ministry of Education Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province State Key Laboratory of Public Big Data College of Computer Science and Technology Guiyang China University Lyon Insa Lyon Cnrs Inserm Irp Metislab Creatis UMR5220 U1206 Lyon69621 France

ISBN: (纸本)9798350387384

Accurately predicting the grade of gliomas is crucial for choosing right treatment plans. While current methods using radiomics and deep learning can predict glioma grades effectively using magnetic resonance imaging (MRI), they overlook dynamic changes in the tumor and its neighboring areas. To address this issue, we propose a tumor state-space network (TSSNet), which fully exploits changes in the tumor region and its surroundings through dynamical updating strategy. The experimental results demonstrated that TSSNet achieves 90.32% accuracy and 93.55% area under the curve (AUC) for the prediction of high-grade and low-grade gliomas, respectively, which are 2.4% and 2.5% higher than the best state-of-the-art deep learning models. Moreover, the proposed state-space module can effectively enhance prediction performance, which is advantageous for personalized glioma treatment. © 2024 IEEE.

关键词： image enhancement

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Deformable registration framework for glioma images with absent correspondence based on auxiliary-image-aided intensity-consistency constraint

Deformable registration framework for glioma images with abs...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Tang, Kun Wang, Lihui Yang, Menglong Xu, Jingwen Cheng, Xinyu Zhang, Jian Zhu, Yuemin Wei, Hongjiang Ministry of Education State Key Laboratory of Public Big Data College of Computer Science and Technology Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province Engineering Research Center of Text Computing & Cognitive Intelligence Guiyang China Univ Lyon Insa Lyon Cnrs Inserm Creatis Umr 5220 U1206 Lyon France Shanghai Jiao Tong University School of Biomedical Engineering Shanghai200240 China

ISBN: (纸本)9798350386226

Considering the tumor aggressive nature and the significant changes in anatomical structure, aligning the preoperative and follow up scans of glioma patients remains a challenge due to the presence of regions with absent correspondence. To address this challenge, this work proposed a novel bidirectional unsupervised deformable image registration framework for image pairs with missing correspondence based on an auxiliary-image-aided intensity-consistency constraint (ICC) strategy. Specifically, for any fixed and moving image pairs, we introduced an auxiliary image and warped it directly to fixed/moving image or warped it twice through a transition of moving/fixed image. By comparing the difference between these warped images, the weighting maps to identify and exclude regions with absent correspondence between fixed and moving image pairs can be generated. To verify the effectiveness of the proposed framework, we combined it with several deep learning-based registration models and tested it on BraTS-Reg challenge dataset, the results demonstrated that the proposed ICC strategy can improve the registration performance for all the models, with the improvement of average target registration error (TRE) and success rate (SR) being up to 44.9% and 66.7%, respectively. Comparing against the best existing forward-backward consistency strategy for dealing with missing correspondence registration, our auxiliary-image-aided ICC strategy can also decrease average TRE by 2.9%, demonstrating the superiority of the proposed framework. The present work is not limited to the glioma images, it can be used to address the registration problems for any image pairs with absent correspondence or inconsistent intensity. © 2024 IEEE.

关键词： image registration

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Multi-scale cyclical similarity prototype refinement for few-shot breast ultrasound image segmentation

Multi-scale cyclical similarity prototype refinement for few...

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International Conference on Signal Processing Proceedings (ICSP)

作者： Yingfeng Ou Xing Yang Jian Zhang Caiqing Jian Lihui Wang Engineering Research Center of Text Computing Ministry of Education Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province State Key Laboratory of Public Big Data College of Computer Science and Technology Guizhou University Guiyang China

ISBN: (数字)9798350387384

ISBN: (纸本)9798350387391

关键词： image segmentation Ultrasonic imaging Breast tumors Semantics Prototypes Signal processing Data mining Few shot learning Residual neural networks

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DFGET: Displacement-Field Assisted Graph Energy Transmitter for Gland Instance Segmentation

DFGET: Displacement-Field Assisted Graph Energy Transmitter ...

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International Conference on Signal Processing Proceedings (ICSP)

作者： Caiqing Jian Yongbin Qin Lihui Wang Chen Ye Xinyu Cheng GState Key Laboratory of Public Big Data College of Computer Science and Technology Engineering Research Center of Text Computing & Cognitive Intelligence Ministry of Education Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province Guizhou University Guiyang China

ISBN: (数字)9798350387384

ISBN: (纸本)9798350387391

关键词： Instance segmentation Measurement Visualization Adhesives Shape Semantic segmentation Glands Signal processing algorithms Signal processing Market research

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HNT-AI: An Automatic Segmentation Framework for Head and Neck Primary Tumors and Lymph Nodes in FDG- PET/CT images 3rd

HNT-AI: An Automatic Segmentation Framework for Head and N...

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3rd 3D Head and Neck Tumor Segmentation in PET/CT Challenge, HECKTOR 2022, held in Conjunction with the 25th International Conference on medical image Computing and Computer Assisted Intervention, MICCAI 2022

作者： Salahuddin, Zohaib Chen, Yi Zhong, Xian Rad, Nastaran Mohammadian Woodruff, Henry C. Lambin, Philippe The D-Lab Department of Precision Medicine GROW-School for Oncology and Reproduction Maastricht University Maastricht Netherlands Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis College of Computer Science and Technology Guizhou University Guiyang China Department of Medical Ultrasonics Institute of Diagnostic and Interventional Ultrasound The First Affiliated Hospital of Sun Yat-sen University Guangzhou China Department of Radiology and Nuclear Medicine GROW-School for Oncology Maastricht University Medical Center Maastricht Netherlands

ISBN: (纸本)9783031274190

Head and neck cancer is one of the most prevalent cancers in the world. Automatic delineation of primary tumors and lymph nodes is important for cancer diagnosis and treatment. In this paper, we develop a deep learning-based model for automatic tumor segmentation, HNT-AI, using PET/CT images provided by the MICCAI 2022 Head and Neck Tumor (HECKTOR) segmentation Challenge. We investigate the effect of residual blocks, squeeze-and-excitation normalization, and grid-attention gates on the performance of 3D-UNET. We project the predicted masks on the z-axis and apply k-means clustering to reduce the number of false positive predictions. Our proposed HNT-AI segmentation framework achieves an aggregated dice score of 0.774 and 0.759 for primary tumors and lymph nodes, respectively, on the unseen external test set. Qualitative analysis of the predicted segmentation masks shows that the predicted segmentation mask tends to follow the high standardized uptake value (SUV) area on the PET scans more closely than the ground truth masks. The largest tumor volume, the larget lymph node volume, and the total number of lymph nodes derived from the segmentation proved to be potential biomarkers for recurrence-free survival with a C-index of 0.627 on the test set. © 2023, The Author(s), under exclusive license to Springer Nature Switzerland AG.

关键词： Biomarkers

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DFGET: Displacement-Field Assisted Graph Energy Transmitter for Gland Instance Segmentation

arXiv

引用

arXiv 2023年

作者： Jian, Caiqing Qin, Yongbin Wang, Lihui Engineering Research Center of Text Computing & Cognitive Intelligence Ministry of Education Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province State Key Laboratory of Public Big Data College of Computer Science and Technology Guizhou University Guiyang550025 China

Gland instance segmentation is an essential but challenging task in the diagnosis and treatment of adenocarcinoma. The existing models usually achieve gland instance segmentation through multi-task learning and boundary loss constraint. However, how to deal with the problems of gland adhesion and inaccurate boundary in segmenting the complex samples remains a challenge. In this work, we propose a displacement-field assisted graph energy transmitter (DFGET) framework to solve these problems. Specifically, a novel message passing manner based on anisotropic diffusion is developed to update the node features, which can distinguish the isomorphic graphs and improve the expressivity of graph nodes for complex samples. Using such graph framework, the gland semantic segmentation map and the displacement field (DF) of the graph nodes are estimated with two graph network branches. With the constraint of DF, a graph cluster module based on diffusion theory is presented to improve the intra-class feature consistency and inter-class feature discrepancy, as well as to separate the adherent glands from the semantic segmentation maps. Extensive comparison and ablation experiments on the GlaS dataset demonstrate the superiority of DFGET and effectiveness of the proposed anisotropic message passing manner and clustering method. Compared to the best comparative model, DFGET increases the object-Dice and object-F1 score by 2.5% and 3.4% respectively, while decreases the object-HD by 32.4%, achieving state-of-the-art performance. © 2023, CC BY-NC-ND.

关键词： Message passing

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