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BDLR:lncRNA identification using ensemble learning

BIOCELL 2022年第4期46卷 951-960页

作者： LEJUN GONG SHEHAI ZHOU JINGMEI CHEN YONGMIN LI LI ZHANG ZHIHONG GAO Jiangsu Key Lab of Big Data Security&Intelligent Processing School of Computer Science Nanjing University of Posts and TelecommunicationsNanjing210046China Smart Health Big Data Analysis and Location Services Engineering Laboratory of Jiangsu Province Nanjing210046China Zhejiang Engineering Research Center of Intelligent Medicine Wenzhou325035China College of Computer Science and Technology Nanjing Forestry UniversityNanjing210037China

Long non-coding RNAs(lncRNAs)play an important role in many life activities such as epigenetic material regulation,cell cycle regulation,dosage compensation and cell differentiation regulation,and are associated with many human *** are many limitations in identifying and annotating lncRNAs using traditional biological experimental *** the development of high-throughput sequencing technology,it is of great practical significance to identify the lncRNAs from massive RNA sequence data using machine learning *** on the Bagging method and Decision Tree algorithm in ensemble learning,this paper proposes a method of lncRNAs gene sequence identification called *** identification results of this classification method are compared with the identification results of several models including Byes,Support Vector Machine,Logical Regression,Decision Tree and Random *** experimental results show that the lncRNAs identification method named BDLR proposed in this paper has an accuracy of 86.61%in the human test set and 90.34%in the mouse for lncRNAs,which is more than the identification results of the other ***,the proposed method offers a reference for researchers to identify lncRNAs using the ensemble learning.

关键词： lncRNAs High-throughput sequencing Ensemble learning Bagging Decision Tree

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LSU-NET: Lightweight Automatic Organs Segmentation Network for Medical Images

LSU-NET: Lightweight Automatic Organs Segmentation Network f...

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International Conference on Acoustics, Speech, and Signal Processing (ICASSP)

作者： Yujie Ding Shenghua Teng Zuoyong Li Xiao Chen College of Electronic and Information Engineering Shandong University of Science and Technology Qingdao China Fujian Provincial Key Laboratory of Information Processing and Intelligent Control School of Computer and Big Data Minjiang University Fuzhou China

ISBN: (数字)9798350368741

ISBN: (纸本)9798350368758

UNet and its variants have widespread applications in medical image segmentation. However, the substantial number of parameters and computational complexity of these models make them less suitable for use in clinical settings with limited computational resources. To address this limitation, we propose a novel Lightweight Shift U-Net (LSU-Net). We integrate the Light Conv Block and the Tokenized Shift Block in a lightweight manner, combining them with a dynamic weight multi-loss design for efficient dynamic weight allocation. The Light Conv Block effectively captures features with a low parameter count by combining standard convolutions with depthwise separable convolutions. The Tokenized Shift Block optimizes feature representation by shifting and capturing deep features through a combination of the Spatial Shift Block and depthwise separable convolutions. Dynamic adjustment of the loss weights at each layer approaches the optimal solution and enhances training stability. We validated LSU-Net on the UWMGI and MSD Colon datasets, and experimental results demonstrate that LSU-Net outperforms most state-of-the-art segmentation architectures.

关键词： Training Image segmentation Convolution Dynamic scheduling Stability analysis Resource management Speech processing Standards Monitoring Biomedical imaging

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Extracting High-order Connectivity of EEG-based Dynamic Functional Connectivity Networks for Diagnosis of Major Depressive Disorder 24

Extracting High-order Connectivity of EEG-based Dynamic Func...

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4th Asia-Pacific Artificial Intelligence and big data Forum, AIBDF 2024

作者： Zhao, Feng Fan, Wenxuan Han, Zhongwei Chen, Hongyu School of Computer Science and Technology Shandong Technology and Business University Shandong Yantai China Yantai Key Laboratory of Big Data Modeling and Intelligent Computing Shandong Yantai China Immersion Technology and Evaluation Shandong Engineering Research Center Shandong Yantai China Information Engineering College Yantai Institute of Technology Shandong Yantai China Shandong Technology and Business University Shandong Yantai China

ISBN: (纸本)9798400710865

Functional connectivity networks (FCNs), particularly those utilizing the phase lag index (PLI) method, have been instrumental in elucidating the pathological features of Major Depressive Disorder (MDD) by assessing the synchrony and lag of electroencephalogram (EEG) signal waveforms. Currently, the more prevalent methods are traditional FCNs that quantify phase synchronization as scalar values and dynamic FCNs (D-FCNs) that employ sliding window approaches to capture the instantaneous variations in functional connectivity. However, these two methods merely capture the low-level functional connections between paired regions of interest (ROIs) from both the static and dynamic perspectives, and fail to reflect the high-level functional connections involving multiple ROIs. Moreover, the feature dimension of the dynamic FCN is excessively high, and there exists a phase mismatch issue between different samples, which renders it impossible to be directly applied to the classification task, and no better solution is available at present. To mitigate these issues, we proposed a comprehensive framework that includes segmenting EEG sequences based on PLI to construct dynamic FCNs;employing seventh-order central moments for feature extraction to form low-order FCNs (Lo-FCNs);and establishing high-order FCNs (Ho-FCNs) based on Pearson correlation theory derived from Lo-FCNs. We conducted classification experiments across four distinct EEG frequency bands using our proposed framework while analyzing relevant features through graph theory and brain topological mapping techniques. The experiments showed that the proposed framework has a high classification accuracy rate in the classification experiments of MDD and NC, and proved the importance of high-order features in classification experiments, indicating that they may serve as physiological markers for MDD diagnosis. © 2024 Copyright held by the owner/author(s).

关键词： Electroencephalography

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Dynamic YOLOv8n: A vehicle detection network model based on YOLOv8n 4

Dynamic YOLOv8n: A vehicle detection network model based on ...

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4th International Conference on Image Processing and Intelligent Control, IPIC 2024

作者： Wei, Wei Liu, Yuxiu Yun, Jian Duan, Xiaodong School of Computer Science and Engineering Dalian Minzu University Dalian116650 China National Ethnic Affairs Commission of the People’s Republic of China Key Laboratory of Big Data Applied Technology Dalian Minzu University Dalian116650 China Dalian Key Laboratory of Digital Technology for National Culture Dalian Minzu University Dalian116650 China

ISBN: (纸本)9781510682313

For the vehicle edge computing platform, a huge model is difficult to achieve the requirements of real-time detection, which faces the challenges of high computational load and bad detection rate. In this paper, an improved YOLOv8n detection method is proposed, and a dynamic deformable convolution block (DDCNv2) is proposed in the YOLOv8n backbone network to improve the detection accuracy of the algorithm.A dynamic convolution module (KWConv) is introduced in the YOLOv8n. In addition, a multi-scale detector module is designed to reduce the number of parameters. We use the PASCAL VOC dataset and the MS COCO *** results show that compared with the existing YOLOv8n, the detection accuracy of the proposed model is improved by 5.1%, the FLOPs is reduced by 69.51%, and the model parameters is reduced by 8.64%, which proves the effectiveness and superiority of the proposed method. © 2024 SPIE.

关键词： Photons

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ThyroidNet:A Deep Learning Network for Localization and Classification of Thyroid Nodules

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computer Modeling in engineering & Sciences 2024年第4期139卷 361-382页

作者： Lu Chen Huaqiang Chen Zhikai Pan Sheng Xu Guangsheng Lai Shuwen Chen Shuihua Wang Xiaodong Gu Yudong Zhang Ultrasonic Department Zhongda Hospital Affiliated to Southeast UniversityNanjing210009China School of Physics and Information Engineering Jiangsu Second Normal UniversityNanjing211200China School of Computing and Mathematical Sciences University of LeicesterLeicesterLE17RHUK Department of Information Systems Faculty of Computing and Information TechnologyKing Abdulaziz UniversityJeddah21589Saudi Arabia State Key Laboratory of MillimeterWaves Southeast UniversityNanjing210096China Jiangsu Province Engineering Research Center of Basic Education Big Data Application Jiangsu Second Normal UniversityNanjing211200China School of Software Engineering Quanzhou Normal UniversityQuanzhou362000China Department of Biological Sciences Xi’an Jiaotong-Liverpool UniversitySuzhou215123China

Aim:This study aims to establish an artificial intelligence model,ThyroidNet,to diagnose thyroid nodules using deep learning techniques ***:A novel method,ThyroidNet,is introduced and evaluated based on deep learning for the localization and classification of thyroid ***,we propose the multitask TransUnet,which combines the TransUnet encoder and decoder with multitask ***,we propose the DualLoss function,tailored to the thyroid nodule localization and classification *** balances the learning of the localization and classification tasks to help improve the model’s generalization ***,we introduce strategies for augmenting the ***,we submit a novel deep learning model,ThyroidNet,to accurately detect thyroid ***:ThyroidNet was evaluated on private datasets and was comparable to other existing methods,including U-Net and *** results show that ThyroidNet outperformed these methods in localizing and classifying thyroid *** achieved improved accuracy of 3.9%and 1.5%,***:ThyroidNet significantly improves the clinical diagnosis of thyroid nodules and supports medical image analysis *** research directions include optimization of the model structure,expansion of the dataset size,reduction of computational complexity and memory requirements,and exploration of additional applications of ThyroidNet in medical image analysis.

关键词： ThyroidNet deep learning TransUnet multitask learning medical image analysis

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TERMS: Task management policies to achieve high performance for mixed workloads using surplus resources

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Journal of Parallel and Distributed Computing 2022年第0期170卷 74-85页

作者： Yu, Jinyu Tong, Wei Lv, Pengze Feng, Dan Wuhan National Laboratory for Optoelectronics Key Laboratory of Information Storage System Engineering Research Center of Data Storage Systems and Technology School of Computer Science and Technology Huazhong University of Science and Technology Ministry of Education of China Hubei Wuhan China

Resource contentions and performance interferences can lead to workload performance degradation in mixed-workload deployment clusters. Previous work guarantees the resource requirements of latency-sensitive tasks and reduces performance losses to batch jobs by reclaiming surplus resources from over-provisioned tasks. While the fragmentation of resources leads to a mismatch between provisioned resources and task requirements, resulting in high operation overheads and losses of task fairness. This paper proposes TERMS, the task management policies based on task relevance, resource distribution, and task fairness to achieve efficient and low-cost task management. TERMS mainly includes three types of management policies. The task scheduling policy can schedule new tasks according to task relevance. Task selection strategies select tasks for resource provisioning and task resumption based on resource requirements and task fairness. If necessary, the node selection strategy can be used to choose befitting target nodes based on task relevance and node resource information for task migration when eliminating straggler tasks. Evaluation results show that TERMS can further improve the performance of latency-sensitive services and batch jobs, reduce management overheads, and avoid operation failures. © 2022 Elsevier Inc.

关键词： Scheduling

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MAQMC:Multi-Agent Deep Q-Network for Multi-Zone Residential HVAC Control

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computer Modeling in engineering & Sciences 2023年第9期136卷 2759-2785页

作者： Zhengkai Ding Qiming Fu Jianping Chen You Lu Hongjie Wu Nengwei Fang Bin Xing School of Electronic and Information Engineering Suzhou University of Science and TechnologySuzhou215009China Jiangsu Province Key Laboratory of Intelligent Building Energy Efficiency Suzhou University of Science and TechnologySuzhou215009China School of Architecture and Urban Planning Suzhou University of Science and TechnologySuzhou215009China Chongqing Industrial Big Data Innovation Center Co. Ltd.Chongqing400707China

The optimization of multi-zone residential heating,ventilation,and air conditioning(HVAC)control is not an easy task due to its complex dynamic thermal model and the uncertainty of occupant-driven cooling *** reinforcement learning(DRL)methods have recently been proposed to address the HVAC control ***,the application of single-agent DRL formulti-zone residential HVAC controlmay lead to non-convergence or slow *** this paper,we propose MAQMC(Multi-Agent deep Q-network for multi-zone residential HVAC Control)to address this challenge with the goal of minimizing energy consumption while maintaining occupants’thermal *** is divided into MAQMC2(MAQMC with two agents:one agent controls the temperature of each zone,and the other agent controls the humidity of each zone)and MAQMC3(MAQMC with three agents:three agents control the temperature and humidity of three zones,respectively).The experimental results showthatMAQMC3 can reduce energy consumption by 6.27%andMAQMC2 by 3.73%compared with the fixed point;compared with the rule-based,MAQMC3 andMAQMC2 respectively can reduce 61.89%and 59.07%comfort *** addition,experiments with different regional weather data demonstrate that the well-trained MAQMC RL agents have the robustness and adaptability to unknown environments.

关键词： Deep reinforcement learning multi-zone residential HVAC multi-agent energy conservation comfort

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Volume Hiding Conjunctive Searchable Symmetric Encryption over Cloud 16

Volume Hiding Conjunctive Searchable Symmetric Encryption ov...

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16th International Conference on Cyber-Enabled Distributed Computing and knowledge Discover, CyberC 2024

作者： Deng, Qinghua Chen, Lanxiang Zhu, Yizhao Mu, Yi City University of Macau Faculty of Data Science 999078 China Hanshan Normal University School of Computer and Information Engineering Chaozhou521041 China Fujian Normal University Fujian Provincial Key Laboratory of Network Security and Cryptology College of Computer and Cyber Security Fuzhou China

ISBN: (纸本)9798331506896

Symmetric searchable encryption (SSE) is crucial for promoting cloud storage. It enables users to encrypt private data and outsource it to untrusted servers while retaining query capabilities. To prevent the cloud from obtaining users' private data, researchers have proposed numerous schemes to protect users' privacy. However, the issue of volume hiding has received less attention. Recent studies have demonstrated that volume leakage can be exploited to infer query *** mitigate the aforementioned leakage problem, we introduce an efficient volume-hiding SSE scheme supporting conjunctive queries, denoted as VHXT. The primary strategy for implementing volume hiding comprises two aspects: first, employing a bitmap-based inverted index to obscure the query response length of the least frequent keyword, and second, introducing laconic PSI for efficient membership testing. The laconic PSI enables our scheme to achieve approximately optimal overhead. Moreover, security analysis and performance evaluation demonstrate that VHXT effectively prevents volume leakage with minimal overhead. © 2024 IEEE.

关键词： information leakage

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Prediction of futile recanalisation after endovascular treatment in acute ischaemic stroke:development and validation of a hybrid machine learning model

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Stroke & Vascular Neurology 2024年第6期9卷 631-639页

作者： Ximing Nie Jinxu Yang Xinxin Li Tianming Zhan Dongdong Liu Hongyi Yan Yufei Wei Xiran Liu Jiaping Chen Guoyang Gong Zhenzhou Wu Zhonghua Yang Miao Wen Weibin Gu Yuesong Pan Yong Jiang Xia Meng Tao Liu Jian Cheng Zixiao Li Zhongrong Miao Liping Liu Department of Neurology Capital Medical UniversityBeijingChina China National Clinical Research Center for Neurological Diseases Beijing Tiantan HospitalBeijingChina School of Computer and Communication Engineering University of Science and TechnologyBeijingChina Department of Radiology Beijing Tiantan HospitalBeijingChina Key Laboratory of Biomechanics and Mechanobiology Ministry of EducationSchool of Biological Science and Medical Engineering International Research Institute for Multidisciplinary ScienceBeihang UniversityBeijingChina Beijing Advanced Innovation Center for Big Data-Based Precision Medicine School of Computer Science and EngineeringBeihang UniversityBeijingChina Department of Interventional Neuroradiology Beijing Tiantan HospitalCapital Medical UniversityBeijingChina

Background Identification of futile recanalisation following endovascular therapy(EVT)in patients with acute ischaemic stroke is both crucial and ***,we present a novel risk stratification system based on hybrid machine learning method for predicting futile *** Hybrid machine learning models were developed to address six clinical scenarios within the EVT and perioperative management *** models were trained on a prospective database using hybrid feature selection technique to predict futile recanalisation following *** optimal model was validated and compared with existing models and scoring systems in a multicentre prospective cohort to develop a hybrid machine learning-based risk stratification system for futile recanalisation *** Using a hybrid feature selection approach,we trained and tested multiple classifiers on two independent patient cohorts(n=1122)to develop a hybrid machine learning-based prediction *** model demonstrated superior discriminative ability compared with other models and scoring systems(area under the curve=0.80,95%CI 0.73 to 0.87)and was transformed into a web application(RESCUE-FR Index)that provides a risk stratification system for individual prediction(accessible online atfr-index.biomind.cn/RESCUE-FR/).Conclusions The proposed hybrid machine learning approach could be used as an individualised risk prediction model to facilitate adherence to clinical practice guidelines and shared decision-making for optimal candidate selection and prognosis assessment in patients undergoing EVT.

关键词： database prediction optimal

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Temporal-Aware Multi-behavior Contrastive Recommendation 28th

Temporal-Aware Multi-behavior Contrastive Recommendation

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28th International Conference on database Systems for Advanced Applications, DASFAA 2023

作者： Xuan, Hongrui Li, Bohan College of Computer Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing China Key Laboratory of Safety-Critical Software Ministry of Industry and Information Technology Nanjing China National Engineering Laboratory for Integrated Aero-Space-GroundOcean Big Data Application Technology Nanjing China

ISBN: (纸本)9783031306716

Modeling various types of users’ interactions and jointly considering individual preferences from multiple perspectives, multi-behavior recommendation has attracted increasing attention recently. However, most existing multi-behavior recommendations only focus on the behavioral interaction itself, attempting to extract user preferences merely by modeling behaviors, while ignoring the properties of the interaction (e.g., the temporal information). Meanwhile, the introduction of multi-behavior information is bound to generate additional noise signals, which further affects the accuracy of recommendation. Thus, to tackle the above challenges, two aspects need to be explored: (1) How to fuse interaction attributes to construct unified cross-behavior dependencies while distinguishing subtle differences between individuals’ behaviors. (2) How to mitigate the effects of noise to a certain extent while preserving multi-behavioral information. In this work, we propose a Temporal-Aware Multi-Behavior Contrastive Learning (TMCL) framework to explore the patterns of multiple behaviors of individuals through temporal information, jointly capture the correlation of users’ preference evolution, and alleviate the impact of multi-behavior noise. Extensive experiments and ablation tests on the three datasets indicate our TMCL outperforms various state-of-the-art methods and verify the effectiveness of our model. © 2023, The Author(s), under exclusive license to Springer Nature Switzerland AG.

关键词： User profile

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