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Proceedings of the 2025 5th International Conference on Bioinformatics and intelligent Computing

作者： Ying Zhang Yuan Liu Xiaoyong Pan Hongbin Shen Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai China

ISBN: (纸本)9798400712203

Protein-Protein Interaction (PPI) provides important insights into the metabolic mechanisms of different biological processes. Although PPIs in some organisms have been investigated systematically, PPIs in the ocean archaea remain largely unexplored. But such species have special investigation value since their adaptation to extreme living conditions may generate unique PPIs. In this paper, we aim to characterize and predict PPIs in ocean archaea to advance understanding of their metabolic networks. First, we collect all ocean archaea PPIs with high confidence from STRING database and analyze the PPI network features, including centrality and enrichment analysis. The functional enrichment results of the largest connecting subgraph in the PPI network show most PPIs in our constructed dataset is related to the translation and transcription processes. Then, we generate an equal number of negative PPI pairs, whose members have either different subcellular locations or GO terms. We also use the generated dataset to test the performance of three pretraining methods and their ensemble methods in the binary PPI prediction task. Our results suggest the ensemble methods could be applied to further improve models’ performance. Fine-tuned models trained on the ocean archaea dataset are expected to predict the other ocean archaea PPIs that are not included in the STRING database and get more understanding about the ocean archaea PPI universe.

关键词： Binary PPI prediction

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Thermal-Torsion Coupling Loading Analysis and Optimization of 3D PoP Assembly Solder Joints at Different Temperatures

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IEEE Transactions on Components, Packaging and Manufacturing Technology 2025年

作者： Gao, Chao Huang, Chunyue Liang, Yin Dian, Chen Lan, Jingyi Wang, Gui Guilin University of Electronic Technology School of Electrical and Mechanical Engineering Guilin541004 China Chengdu University Key Laboratory of Pattern Recognition and Intelligent Information Processing Institutions of Higher Education of Sichuan Province Chengdu610106 China Chengdu Aeronautic Vocational and Technical College Chengdu610021 China

A simulation analysis was conducted to investigate the stress distribution of Package-on-Package (PoP) assembly array solder joints subjected to thermal-torsional coupling loads, with the validity of the simulation confirmed through coupled loading stress-strain measurement experiments. The volume-weighted average method was employed to calculate the average equivalent stress (Δσ) of the critical solder joint danger element layer within the PoP assembly array, using Δσ as the evaluation benchmark. The impact and sensitivity of structural parameters on the thermal-torsional coupling stress of solder joints were examined. A structural parameter sensitivity model was developed to facilitate the stability and optimization analysis of the structural parameter intervals. The results indicate that solder joints in the lower array of the PoP assembly experience higher thermal-torsional coupling stress, with the peak internal stress occurring at the interface between the solder joint and the copper pad. The variation in thermal-torsional coupling stress of the array solder joints is more pronounced in the low-temperature region compared to the high-temperature region, with maximum stress occurring at -55°C and minimum stress observed at 125°C. Within the structural parameter range, the Δσ value of the critical solder joint shows a negative correlation with solder joint height, solder joint diameter, and substrate thickness, and a positive correlation with PCB thickness. The sensitivity to structural parameters follows the order: solder joint diameter, solder joint height, PCB thickness, and substrate thickness. Finally, the optimal range of structural parameters was determined, and the stability of this range was assessed. © 2011-2012 IEEE.

关键词： Sensitivity analysis

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Task-Oriented Multi-user Semantic Communication based on Deep Over-the-Air Computation

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IEEE Transactions on Vehicular Technology 2025年

作者： Wei, Shuangying Feng, Chunyan Guo, Caili Zhang, Biling Chen, Jiujiu Beijing University of Posts and Telecommunications Beijing Key Laboratory of Network System Architecture and Convergence School of Information and Communication Engineering Beijing 100876 China Nanchang Hangkong University Key Laboratory of Processing and Pattern Recognition of Jiangxi Province School of Information Engineering Nanchang 330063 China

The presence of large-scale heterogeneous IoT devices and AI-based applications has brought significant transmission and computation pressure on the wireless communication system. In this paper, we propose a novel multi-user semantic communication framework based on deep over-the-air computation called SC-DAC to tackle this challenge. By integrating communication and computation through a deep over-the-air computation (AirComp) encoder, SC-DAC is able to utilize the superposition of multiple access channels, facilitating multi-user information fusion during transmission and eliminating the need for multi-user detection at the receiver. Further, to achieve the optimal task results, the semantic encoders, decoders, and AirComp encoder are jointly optimized, where stochastic gradient descent (SGD) algorithm and deep double-Q network (DDQN) are employed to optimize the encoder/decoder parameters. The simulation results demonstrate that as the number of users increased, the performance of the system remains relatively stable and shows potential in resource utilization. What's more, when applied to the AI-based tasks such as multi-user multimodal action recognition and semantic segmentation, SC-DAC enhances the accuracy of action recognition by 26% compared with traditional methods and by about 30%-50% compared with other multi-user semantic communication methods under conditions of low signal-to-noise ratio (SNR), while it enhances the accuracy of semantic segmentation by 0.22 to 0.32 compared to other methods © 1967-2012 IEEE.

关键词： deep learning multi-user communication over-the-air computation reinforcement learning Semantic communication

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Metasurface-Loaded Circularly Polarized Dual-Band MIMO Cellphone Frame Antenna for Mobile Communication Applications

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IEEE Antennas and Wireless Propagation Letters 2025年

作者： Meng, Yanfeng Ren, Aidi Wang, Chao Xu, Guanghui Zhao, Luyu Li, Yingsong Yang, Lixia Huang, Zhi-Xiang Anhui University Information Materials and Intelligent Sensing Laboratory of Anhui Province Hefei230039 China Anhui University School of Electronic and Information Engineering Hefei230601 China Anhui University Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Hefei230039 China Anhui Province Key Laboratory of Target Recognition and Feature Extraction Anhui237010 China Anhui University Key Laboratory of Electromagnetic Environment al Sensing of Anhui Higher Education Institutes Hefei230039 China

In this letter, a set of circularly polarized (CP) multiple-input multiple-output (MIMO) cellphone frame antennas for mobile communication applications is proposed. The planar inverted-F antenna (PIFA) and monopole antenna operate at frequencies of 3.5 GHz and 5.5 GHz with impedance and axial ratio (AR) bandwidths overlapping at 11.4% (3.3-3.7 GHz) and 7.3% (5.2-5.6 GHz), respectively. To reduce the electromagnetic coupling between the two antennas, the V-shaped mental fence is added and different rectangular metasurface (RMS) arrays are adopted to enhance the CP radiation performances. This design not only covers 5G communication, LTE, and the 5 GHz Wi-Fi band. It also provides a communication strategy for future direct satellite communication from cellphones, enhancing efficient switching between satellite and cellular networks. © 2002-2011 IEEE.

关键词： Monopole antennas

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Representation Auto-fused NMF based Hierarchical Clustering

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Expert Systems with Applications 2025年 283卷

作者： Lin, Yunxia Hu, Haoyu Li, Bentian Zhao, Shuchang Jing, Hengchang School of Information Engineering Yangzhou University Yangzhou225127 China Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service Yangzhou University Yangzhou225127 China MIIT Key Laboratory of Pattern Analysis and Machine Intelligence Nanjing211106 China Institute of Intelligent Information Processing Taizhou University Taizhou318000 China Taizhou University Taizhou318000 China

Nonnegative matrix factorization (NMF) as a powerful representation learning technique has been extensively applied in clustering tasks across diverse domains, leading to the proliferation of various NMF-based clustering methods. However, most of these methods suffer from the suboptimal performance arising from the disjointed process of representation learning and clustering, and the necessity to manually predetermine the optimal number of clusters which is a critical factor affecting the quality of clustering results. To fill this gap and inspired by convex clustering, we propose a simple yet effective NMF-based clustering method named Representation Auto-fused NMF based Hierarchical Clustering (RAFNMF-HC) by incorporating the l2 norm penalty on the differences between pairs of representations into the NMF framework to foster the automatic fusion of representations during representation learning. As the fusion continuously proceeds, similar representations gradually coalesce into small clusters, which subsequently merge into larger ones until a largest cluster encompassing all representations is formed, enabling a joint representation learning and clustering paradigm. Moreover, a cluster hierarchy as a byproduct adaptively emerges without requiring a predefined number of clusters, thus providing us with interpretability of cluster structure of data to some degree. Additionally, RAFNMF-HC only incorporates a single hyperparameter, significantly simplifying the adjustment process and boosting its practical efficiency. Our proposed RAFNMF-HC method also boasts straightforward scalability to diverse NMF variants, enhancing its versatility. Extensive experiments on various real-world datasets demonstrate the superiority of RAFNMF-HC. © 2025 Elsevier Ltd

关键词： Hierarchical clustering

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Deep Learning in Palmprint recognition-A Comprehensive Survey

arXiv

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arXiv 2025年

作者： Gao, Chengrui Yang, Ziyuan Jia, Wei Leng, Lu Zhang, Bob Teoh, Andrew Beng Jin College of Computer Science Sichuan University Chengdu610065 China Singapore School of Computer and Information Hefei University of Technology Hefei China Jiangxi Provincial Key Laboratory of Image Processing and Pattern Recognition Nanchang Hangkong University Nanchang China Pattern Analysis and Machine Intelligence Group Department of Computer and Information Science University of Macau Taipa China School of Electrical and Electronic Engineering College of Engineering Yonsei University Seoul Korea Republic of

Palmprint recognition has emerged as a prominent biometric technology, widely applied in diverse scenarios. Traditional handcrafted methods for palmprint recognition often fall short in representation capability, as they heavily depend on researchers' prior knowledge. Deep learning (DL) has been introduced to address this limitation, leveraging its remarkable successes across various domains. While existing surveys focus narrowly on specific tasks within palmprint recognition-often grounded in traditional methodologies-there remains a significant gap in comprehensive research exploring DL-based approaches across all facets of palmprint recognition. This paper bridges that gap by thoroughly reviewing recent advancements in DL-powered palmprint recognition. The paper systematically examines progress across key tasks, including region-of-interest segmentation, feature extraction, and security/privacy-oriented challenges. Beyond highlighting these advancements, the paper identifies current challenges and uncovers promising opportunities for future research. By consolidating state-of-the-art progress, this review serves as a valuable resource for researchers, enabling them to stay abreast of cutting-edge technologies and drive innovation in palmprint recognition. Copyright © 2025, The Authors. All rights reserved.

关键词： Biometrics

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Discovering the nuclear localization signal universe through a deep learning model with interpretable attention units

Patterns

引用

patterns 2025年

作者： Yi-Fan Li Xiaoyong Pan Hong-Bin Shen Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University and Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai 200240 China

We describe NLSExplorer, an interpretable approach for nuclear localization signal (NLS) prediction. By utilizing the extracted information on nuclear-specific sites from the protein language model to assist in NLS detection, NLSExplorer achieves superior performance with greater than 10% improvement in the F1 score compared with existing methods on benchmark datasets and highlights other nuclear transport segments. We applied NLSExplorer to the nucleus-localized proteins in the Swiss-Prot database to extract valuable segments. A comprehensive analysis of these segments revealed a potential NLS landscape and uncovered features of nuclear transport segments across 416 species. This study introduces a powerful tool for exploring the NLS universe and provides a versatile network that can efficiently detect characteristic domains and motifs.

关键词： nuclear localization signals prediction protein language model database mining deep learning interpretation

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Segmentation of the Ventricle Membranes in Short-Axis Sequences by Optical Flow Base on DLSRE Model

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Chinese Journal of Electronics 2021年第3期30卷 460-470页

作者： LI Lin WU Hengfei LI Junhua Department of Electronics and Information Engineering Bozhou University Key Laboratory of Jiangxi Province for Image Processing and Pattern Recognition Nanchang Hangkong University

Recent studies have pointed out that the boundary of the extracted ventricle membranes is unsmooth, and the segmentation of the cardiac papillary muscle and trabecular muscle do inconformity the clinical requirements. To address these issues, this paper proposes an automatic segment algorithm for continuously extracting ventricle membranes boundary, which adopts optical flow field information and sequential images information. The images are cropped by frame difference method, which according to the continuity of adjacent slices of cardiac MRI images. The roughly boundary of epicardium is extracted by the Double level set region evolution(DLSRE) model, which combines image global information, local information and edge information. The ventricle endocardium and epicardial contours are tracked according to the optical flow field information between image sequences. The segmentation results are optimized by Delaunay triangulation algorithm. The experimental results demonstrate that the proposed method can improve the accuracy of segmenting the ventricle endocardium and epicardium contours, and segment the contour of the smooth ventricle membrane edge that meets the clinical definition.

关键词： edge information image sequences automatic segment algorithm sequential images information clinical requirements medical image processing cardiology optical flow base extracted ventricle membranes roughly boundary local information ventricle endocardium trabecular muscle optical flow field information continuously extracting ventricle membranes boundary DLSRE model biomedical MRI smooth ventricle membrane edge image global information mesh generation muscle short-axis sequences cardiac MRI images image segmentation cardiac papillary muscle frame difference method region evolution model

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Fast hybrid fitting energy-based active contour model for target detection

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Chinese Optics Letters 2011年第7期9卷 29-32页

作者：王登位张天序颜露新 State Key Laboratory for Multispectral Information Processing Technologies Institute for Pattern Recognition and Artificial Intelligence Huazhong University of Science and Technology

A novel hybrid fitting energy-based active contour model in the level set framework is proposed. The method fuses the region and boundary information of the target to achieve accurate and robust detection performance. A special extra term that penalizes the deviation of the level set function from a signed distance function is also included in our method. This term allows the time-consuming redistancing operation to be removed completely. Moreover, a fast unconditionally stable numerical scheme is introduced to solve the problem. Experimental results on real infrared images show that our method can improve target detection performance efficiently in terms of the number of iterations and the wasted central processing unit （CPU） time.

关键词： Infrared imaging Program processors

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High performance reconfigurable hardware system for real-time image processing

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Journal of Systems Engineering and Electronics 2005年第3期16卷 502-509页

作者：赵广州张天序王岳环曹治国左峥嵘 State Key Laboratory for I mage Processing and Intelligent Control Inst .for Pattern Recognition and Artificial Intelligence Huazhong Univ .of Science and Technology

A novel reconfigurable hardware system which uses both muhi-DSP and FPGA to attain high performance and real-time image processing are presented. The system structure and working principle of mainly processing multi-BSP board, extended multi-DSP board are analysed. The outstanding advantage is that the communication among different board components of this system is supported by high speed link ports ＆ serial ports for increasing the system performance and computational power. Then the implementation of embedded real-time operating systems （RTOS） by us is discussed in detail. In this system, we adopt two kinds of parallel structures controlled by RTOS for parallel processing of algorithms. The experimental results show that exploitive period of the system is short, and maintenance convenient. Thus it is suitable for real-time image processing and can get satisfactory effect of image recognition.

关键词： multi-DSP fidd programmable gate arrays real-time image processing real time operating systems parallel structure.

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