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A review of big data technology and its application in cancer care

Computers in Biology and Medicine 2024年 176卷 108577-108577页

作者： Xiao, Tianyun Kong, Shanshan Zhang, Zichen Hua, Dianbo Liu, Fengchun Hebei Key Laboratory of Data Science and Application North China University of Science and Technology Hebei Tangshan063210 China The Key Laboratory of Engineering Computing in Tangshan City North China University of Science and Technology Hebei Tangshan063210 China College of Science North China University of Science and Technology Hebei Tangshan063210 China Hebei Engineering Research Center for the Intelligentization of Iron Ore Optimization and Ironmaking Raw Materials Preparation Processes North China University of Science and Technology Hebei Tangshan China Tangshan Intelligent Industry and Image Processing Technology Innovation Center North China University of Science and Technology Hebei Tangshan China Beijing Sitairui Cancer Data Analysis Joint Laboratory Beijing101149 China

The development of modern medical devices and information technology has led to a rapid growth in the amount of data available for health protection information, with the concept of medical big data emerging globally, along with significant advances in cancer care relying on data-driven approaches. However, outstanding issues such as fragmented data governance, low-quality data specification, and data lock-in still make sharing challenging. Big data technology provides solutions for managing massive heterogeneous data while combining artificial intelligence (AI) techniques such as machine learning (ML) and deep learning (DL) to better mine the intrinsic connections between data. This paper surveys and organizes recent articles on big data technology and its applications in cancer, dividing them into three different types to outline their primary content and summarize their critical role in assisting cancer care. It then examines the latest research directions in big data technology in cancer and evaluates the current state of development of each type of application. Finally, current challenges and opportunities are discussed, and recommendations are made for the further integration of big data technology into the medical industry in the future. © 2024 Elsevier Ltd

关键词： Big data

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Encoding Global Semantic and Localized Geographic Spatial-Temporal Relations for Traffic Accident Risk Prediction

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SSRN 2024年

作者： Alhaek, Fares Li, Tianrui Rajeh, Taha M. Javed, Muhammad Hafeez Liang, Weichao School of Computing and Artificial Intelligence Southwest Jiaotong University Chengdu611756 China Engineering Research Center of Sustainable Urban Intelligent Transportation Ministry of Education Chengdu611756 China National Engineering Laboratory of Integrated Transportation Big Data Application Technology Southwest Jiaotong University Chengdu611756 China Manufacturing Industry Chains Collaboration and Information Support Technology Key Laboratory of Sichuan Province Southwest Jiaotong University Chengdu611756 China

The proliferation of vehicles and the intricate layout of road systems have contributed to a significant rise in traffic accidents, posing a pressing concern globally. Despite the advancements facilitated by deep learning, several challenges persist in the domain of traffic accident prediction. Firstly, the sparsity of accident data in certain city regions presents a significant obstacle, particularly when attempting fine-grained predictions at a local level. Secondly, the intricate spatial-temporal relations inherent in traffic accident data pose a challenge for existing prediction models. In response to these formidable challenges, this paper presents GLST-TARP, a novel model for predicting traffic accident risk in urban environments by leveraging both global semantic and localized geographic spatial-temporal relations. Specifically, we construct multi-graphs to encode global static and dynamic spatial relations, incorporating attention mechanisms to adaptively focus on relevant information and temporal relations. Additionally, we employ channel-wise convolutional neural network blocks to extract localized geographic features and enhance predictive accuracy. The proposed model is trained using a Huber loss function tailored for regression tasks, relieving the impact of zero values during optimization. Experimental results demonstrate that GLST-TARP outperforms state-of-the-art methods in predicting traffic accident risks, showcasing its potential for enhancing urban safety and transportation management. © 2024, The Authors. All rights reserved.

关键词： Graph neural networks

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可持续发展情景下丝绸之路沿线国家土地利用及其对陆地碳库影响

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Science Bulletin 2023年第7期68卷 740-749页

作者：曹敏田雅吴凯陈旻陈玉胡雪孙中昶左丽君林键骆磊朱瑞许振赐 Temenoujka Bandrova Milan Konecny 袁文平郭华东林珲闾国年 Key Laboratory of Virtual Geographic Environment Ministry of EducationNanjing Normal UniversityNanjing 210023China International Research Center of Big Data for Sustainable Development Goals Beijing 100094China Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application Nanjing 210023China School of Geography and Environment Jiangxi Normal UniversityNanchang 330022China Aerospace Information Research Institute Chinese Academy of SciencesBeijing 100094China The Key Laboratory of Urban Land Resources Monitoring and Simulation Ministry of Natural ResourcesShenzhen 518034China Sierra Nevada Research Institute University of CaliforniaMerced CA 95348USA Institute of High Performance Computing Agency for ScienceTechnology and ResearchSingapore 138632Singapore Department of Geography the University of Hong KongHong Kong 999077China Laboratory on Cartography University of ArchitectureCivil Engineering and GeodesySofia 1164Bulgaria Laboratory on Geoinformatics and Cartography Institute of GeographyMasaryk UniversityBrno 60177Czech Republic School of Atmospheric Sciences Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai)Sun Yat-sen UniversityZhuhai 519082China Key Laboratory of Poyang Lake Wetland and Watershed Research Ministry of EducationJiangxi Normal UniversityNanchang 330022China

可持续发展目标(SDGs)呼吁全世界共同采取行动,促进繁荣并保护地球.本研究面向SDGs构建了环境、粮食和经济等可持续发展情景,预测2020~2030年丝绸之路沿线国家的土地利用变化,并分析其对陆地碳库的影响。研究表明:未来土地利用变化及其... 详细信息

可持续发展目标(SDGs)呼吁全世界共同采取行动,促进繁荣并保护地球.本研究面向SDGs构建了环境、粮食和经济等可持续发展情景,预测2020~2030年丝绸之路沿线国家的土地利用变化,并分析其对陆地碳库的影响。研究表明:未来土地利用变化及其对陆地碳库的影响在不同情景下存在显著差异。在可持续环境情景下,林地得到了有效保护,相较于2020年中国林地碳储量增加了约0.60%;在可持续粮食情景下,耕地流失得到了缓解,尤其在南亚及东南亚地区的耕地面积呈现上升趋势:在可持续经济情景下,城市扩张速度加快,引起的碳损失量最多这项研究有助于推进丝绸之路沿线甚至全球可持续发展进程,为探寻可持续发展路径提供了科学依据。

关键词： Sustainable development goals(SDGs) Land-use projection Carbon pool Scenarios System dynamics model Cellular automata

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Privacy-Preserving Federated Learning Framework with Resisting Source Inference Attacks in Smart Healthcare

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SSRN 2024年

作者： Chenghe, Dong Xu, Guangquan Zhang, Jianhong Bai, Hongpeng Hao, Peng College of Intelligence and Computing Tianjin University Tianjin300354 China School of Big Data Qingdao Huanghai University Qingdao China Tianjin300350 China Department of Electrical and Computer Engineering North China University of Technology Beijing100144 China Key Laboratory of Intelligent Education Technology Application of Zhejiang Province School of Computer Science and Technology Zhejiang Normal University Jinhua321004 China

Federated Learning (FL) is a distributed machine learning technology that is extensive applications in smart healthcare, since it allows multiple medical institutions to jointly train medical diagnostic models without sharing their local sensitive dataset with others. Despite its benefits, FL is susceptible to source inference attacks and model poisoning. To avoid these issues, we propose a federated learning framework for smart healthcare that preserves privacy and employs certificateless ring signatures to counteract potential attacks. During the collaborative training process of the FL model, certificateless ring signatures are used to obscure the origin of parameter updates, ensuring the anonymity of the parameter sources. This approach has the advantage of being computationally efficient due to no complicated pairing operations. Furthermore, compared with the previous certificateless ring signature schemes, our proposed scheme is more effective in reducing the success rate of source inference attacks, and is efficient in terms of computation and communication overhead. © 2024, The Authors. All rights reserved.

关键词： Federated learning

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A Diverse Biases Non-negative Latent Factorization of Tensors Model for Dynamic Network Link Prediction

A Diverse Biases Non-negative Latent Factorization of Tensor...

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IEEE International Conference on Networking, Sensing and Control

作者： Xuke Wu Hang Gou Hao Wu Juan Wang Minzhi Chen Siyu Lai Computer School China West Normal University Nanchong China Computer School of China West Normal University Nanchong Sichuan China University of Chinese Academy of Sciences Beijing China Chongqing Engineering Research Center of Big Data Application for Smart Cities and Chongqing Key Laboratory of Big Data and Intelligent Computing Chongqing Institute of Green and Intelligent Technology Chinese Academy of Sciences Chongqing China North Sichuan Medical College Nanchong China Medical College Nanchong Sichuan China

ISBN: (数字)9781728168555

ISBN: (纸本)9781728168562

Dynamic networks vary over time, making it vital to capture networks temporal patterns for predicting missing links with high accuracy. A biased non-negative latent factorization of tensors (BNLFT) model is very effective in extracting such patterns from dynamic data. However, a BNLFT model only integrates single bias, which cannot adequately represents the volatility of the dynamic data. To address this issue, this paper presents a Diverse Biases Non-negative Latent Factorization of Tensors (DBNT) model for accurate prediction of missing links in dynamic networks. Meanwhile, for further prediction accuracy improvement, the preprocessing bias is integrated into the DBNT model. Empirical studies on two dynamic networks datasets from real applications show that compared with state of the art predictors, a DBNT model achieves higher prediction accuracy.

关键词： Tensors Conferences Predictive models data models Sensors data mining

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Predicting Large-scale Protein-protein Interactions by Extracting Coevolutionary Patterns with MapReduce Paradigm

Predicting Large-scale Protein-protein Interactions by Extra...

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IEEE International Conference on Systems, Man and Cybernetics

作者： Lun Hu Bo-Wei Zhao Shicheng Yang Xin Luo MengChu Zhou Xinjiang Technical Institute of Physics and Chemistry Chinese Academy of Sciences Urumqi China School of Computer Science and Technology Wuhan University of Technology Wuhan China Chongqing Engineering Research Center of Big Data Application for Smart Cities and Chongqing Key Laboratory of Big Data and Intelligent Computing Chongqing Institute of Green and Intelligent Technology Chinese Academy of Sciences Chongqing China Hengrui (Chongqing) Artificial Intelligence Research Center Cloudwalk China New Jersey Institute of Technology Newark NJ USA

ISBN: (纸本)9781665442084

Protein-protein interactions are of great significance for us to understand the functional mechanisms of proteins. With the rapid development of high-throughput genomic technology, the amount of protein-protein interaction data has become so big that most of existing prediction algorithms are no longer applicable. To address this problem, we develop a distributed framework by reimplementing one of state-of-the-art algorithms, i.e., CoFex, by using MapReduce. In particular, we adopt a novel tree-based data structure to reduce the heavy memory consumption cased by the huge sequence information of proteins. After that, the procedure of CoFex is modified by following the paradigm of MapReduce such that the prediction task can be completed in a distributed manner, thus fulfilling the demanding requirements of large-scale protein-protein interaction prediction. A series of experiments have been conducted to evaluate the performance of the proposed distributed framework in terms of both efficiency and effectiveness. Experimental results demonstrate that the proposed framework can considerably improve the efficiency of CoFex by achieving more than two-orders-of-magnitude improvement in computational efficiency while retaining a comparable level of accuracy.

关键词： Proteins Memory management Genomics Predictive models Prediction algorithms data structures Computational efficiency

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Multi-view clustering guided by unconstrained non-negative matrix factorization

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Knowledge-Based Systems 2023年 266卷

作者： Deng, Ping Li, Tianrui Wang, Dexian Wang, Hongjun Peng, Hong Horng, Shi-Jinn School of Computer and Software Engineering Xihua University Chengdu610039 China School of Computing and Artificial Intelligence Southwest Jiaotong University Chengdu611756 China National Engineering Laboratory of Integrated Transportation Big Data Application Technology Southwest Jiaotong University Chengdu611756 China Manufacturing Industry Chains Collaboration and Information Support Technology Key Laboratory of Sichuan Province Chengdu611756 China Department of Computer Science and Information Engineering National Taiwan University of Science and Technology Taipei106 Taiwan

Multi-view clustering based on non-negative matrix factorization (NMFMvC) is a well-known method for handling high-dimensional multi-view data. To satisfy the non-negativity constraint of the matrix, NMFMvC is usually solved using the Karush–Kuhn–Tucker (KKT) conditions. However, this optimization method is poorly scalable. To this end, we propose an unconstrained non-negative matrix factorization multi-view clustering (uNMFMvC) model. First, the objective function was constructed by decoupling the elements of the matrix and combining the elements with a non-linear mapping function in a non-negative value domain. The objective function was then optimized using the stochastic gradient descent (SGD) algorithm. Subsequently, three uNMFMvC methods were constructed based on different mapping functions and detailed reasoning was provided. Finally, experiments were conducted on eight public datasets and compared with cutting-edge multi-view clustering methods. The experimental results demonstrate that the proposed model has significant advantages. © 2023 Elsevier B.V.

关键词： Non-negative matrix factorization

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Fs-Woa-Stacking: A Novel Ensemble Model for Early Diagnosis of Breast Cancer

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SSRN 2024年

作者： Xiao, Tianyun Kong, Shanshan Zhang, Zichen Liu, Fengchun Yang, Aimin Hua, Dianbo Hebei Key Laboratory of Data Science and Application North China University of Science and Technology Hebei Tangshan063210 China The Key Laboratory of Engineering Computing in Tangshan City North China University of Science and Technology Hebei Tangshan063210 China College of Science North China University of Science and Technology Hebei Tangshan063210 China Hebei Engineering Research Center for the Intelligentization of Iron Ore Optimization and Ironmaking Raw Materials Preparation Processes North China University of Science and Technology Hebei Tangshan China Tangshan Intelligent Industry and Image Processing Technology Innovation Center North China University of Science and Technology Hebei Tangshan China Beijing Sitairui Cancer Data Analysis Joint Laboratory Beijing101149 China

In this paper, a new integrated scheme is proposed to accurately predict breast cancer, help doctors make early diagnosis and treatment plans, and improve the prognosis of patients. We selects five mainstream machine learning models: support vector machine (SVM), artificial neural network (ANN), random forest (RF), extreme gradient boosting (XGBoost) and adaptive boosting (AdaBoost). The Wisconsin Breast Cancer database (WBCD) and Wisconsin Diagnostic Breast Cancer (WDBC) are used as datasets to investigate the predictive performance of these single and ensemble models. Then, we use multiple linear regression method for feature selection (FS), the experimental results show that the change of feature subset will significantly affect the performance of the model. After that, we apply whale optimization algorithm (WOA) to optimize the hyperparameters of the model to improve their prediction performance. In addition, we ensemble these models by stacking, investigate the performance changes of the ensemble model when different models are used as meta learners. Finally, the FS-WOA-Stacking model achieves 99.56% accuracy on WBCD and 99.65% accuracy on WDBC. Compared with the existing breast cancer prediction models, the performance of the proposed model is at an excellent level. © 2024, The Authors. All rights reserved.

关键词： Adaptive boosting

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Bone metastasis segmentation based on Improved U-NET algorithm

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Journal of Physics: Conference Series 2021年第1期1848卷

作者： Jingyi Zhang Mengge Huang Tao Deng Yongchun Cao Qiang Lin Key Laboratory of China's Ethnic Languages and Information Technology of Ministry of Education Northwest Minzu University Lanzhou 730030 P. R. China Key Laboratory of Streaming Data Computing Technologies and Application Northwest Minzu University Lanzhou 730030 P. R. China School of Mathematics and Computer Science Northwest Minzu University Lanzhou 730030 P. R. China

Whole body bone scan image analysis is widely used in nuclear medicine to assist nuclear medicine physicians in the detection of bone metastases. At present, the analysis of whole-body bone scan images mainly relies on the manual reading of nuclear medicine doctors. The doctors, based on personal knowledge and experience, look for abnormal lesion locations and diagnose them by examining the whole-body bone scan images. However, this method is prone to misdiagnosis and missed diagnosis. To solve the above problems, this study proposes an image segmentation method based on deep learning, which can automatically identify the location of bone metastases, so that doctors can make more accurate diagnosis. The Methods Attention mechanism was added to the jump connection of the original U-NET network to enhance the image feature selection. Experiments show that the algorithm in this study teaches traditional U-Net to show better results on the three indicators of MIoU Dice and MAP.

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Collaborative filtering recommendation algorithm integrating user similarity and trust

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Journal of Physics: Conference Series 2021年第1期2010卷

作者： Mengge Huang Kai Cao Jingyi Zhang Chuanlin Zhang Tao Deng Key Laboratory of China's Ethnic Languages and Information Technology of Ministry of Education Northwest Minzu University Lanzhou 730030 P. R. China Key Laboratory of Streaming Data Computing Technologies and Application Northwest Minzu University Lanzhou 730030 P. R. China School of Mathematics and Computer Science Northwest Minzu University Lanzhou 730030 P. R. China

The rapid development of the Internet has brought convenience to people and has also produced the problem of 'information overload'. In view of the traditional collaborative filtering algorithm facing some bottlenecks to be solved, this study proposes a collaborative filtering algorithm that combines similarity and trust. First of all, in view of the large deviation of traditional similarity calculation and prediction of user ratings, this study proposes an optimized Pearson correlation coefficient calculation method; secondly, the trust relationship is established based on the user's rating of the common project, and the trust relationship between users who do not have a direct trust relationship is established through the transfer of trust; then find the nearest neighbor set of the target user through the fusion of user similarity and trust; finally, the item is scored and predicted to generate a recommendation list. Experimental results show that the algorithm proposed in this study can effectively improve the accuracy of recommendation.

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