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Improved filter feature selection methods by samples localization

Journal of Bionanoscience 2013年第4期7卷 371-377页

作者： Sun, Ying Wang, Yan Chen, Liang Du, Wei Cao, Zhongbo Zhou, You College of Computer Science and Technology Key Laboratory of Symbol Computation and Knowledge Engineering of the Ministry of Education Jilin University Changchun 130012 China College of Chemistry Jilin University Changchun 130012 China

With the development of high-throughput microarray technology, a large number of microarray data has been obtained by tens of thousands of simulation experiments on gene expression. However, due to the high cost, gene expression data of each experiment has a small number of samples for tens of thousands of genes. Furthermore, most of the genes, such as the features, are unrelated to classification. Therefore, developing an effective and robust method to extract informative genes subset from high dimensional microarray data is a challenging and important issue for microarray data analysis. In this article, we propose an improved feature selection method by samples localization. We only use localized samples to select genes subset, in order to effectively overcome the influence on the results of feature selection by outlier samples and the distribution of samples. Experimental results obtained by SVM classifiers on Leukemia dataset, Prostate dataset, Colon dataset, Breast dataset, DLBCL dataset and Lung dataset demonstrate that the proposed method is superior to those original filter feature selection methods both in best and average accuracies. Copyright © 2013 American Scientific Publishers. Website © 2013 Publishing Technology.

关键词： Feature Selection

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Noise suppression of fluorescein angiogram sequences using bilateral filter

Noise suppression of fluorescein angiogram sequences using b...

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International Conference on Machine Learning and Cybernetics, ICMLC 2005

作者： Guo, Xiao-Xin Lu, Yi-Nan Xu, Zhi-Wen Liu, Zhan-Hui Wang, Yun-Xiao Pang, Yun-Jie Key Laboratory of Symbol Computation and Knowledge Engineering Jilin University Ministry of Education Qianjin Street 2699 Changchun 130012 China

ISBN: (纸本)078039092X

In this paper, a relatively flexible filter called extended bilateral filter is proposed, by which some particular filters can be designed via selecting an appropriate pixel of interest (POI) and defining a kernel for the filter according to some specified requirements. Based on the filter, a fluorescein-angiogram-oriented filter, high-intensity preserving (HIP) filter is introduced to solve the problems of high-intensity preservation when denoising. The results of the experiments show that the HIP filter has the ability of noise suppression, and the ability of high-intensity preservation, which can keep the intensities of bright pixels from degrading via distributing the weights adaptively according to the location and the intensity of each pixel. © 2005 IEEE.

关键词： Image processing

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Automatic localization of macular area based on structure label transfer

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International Journal of Ophthalmology(English edition) 2018年第3期11卷 422-428页

作者： Xiao-Xin Guo Qun Li Chao Sun Yi-Nan LU Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education Changchun130012 Jilin Province China College of Computer Science and Technology Jilin University Changchun 130012 Jilin Province China

AIM： To explore feasibility and practicability of macula localization independent of macular morphological features. METHODS： A novel method was proposed to identify macula in fundus images by using structure label transfer. Its main idea was to match a processed image with the candidate images with known structures, and then transfer the structure label representing the macular to the processed image as a result of macula localization. In this way, macula localization couldn＇t be influenced by lesion or other interference any more. RESULTS： The average success rate in four datasets was 98.18%. For accuracy, the average error distance in four datasets was 0.151 optic disc diameter （ODD）. Even for severe lesion images, the proposed method can still maintain high success rate and high accuracy, e.g., 95.65% and 0.124 ODD in the case of STARE dataset, respectively, which indicated that the proposed method was highly robust and stable in the complicated situations. CONCLUSION： The proposed method can avoid the interference of lesion to macular morphological features in macula localization, and can locate macula with high accuracy and robustness, verifying its feasibility.

关键词： fundus image optic disc macula structurelabel transfer

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An approach for calculating semantic similarity between words using WordNet

An approach for calculating semantic similarity between word...

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2011 2nd International Conference on Digital Manufacturing and Automation, ICDMA 2011

作者： Hao, Dou Zuo, Wanli Peng, Tao He, Fengling College of Computer Science and Technology Jilin University Key Laboratory of Symbol Computation and Knowledge Engineering of the Ministry of Education Changchun China

ISBN: (纸本)9780769544557

This paper presents a new edge-counting based method using Word Net to compute the similarity. The method achieves a similarity that perfectly fits with human rating and effectively simulate the human tHought process that is people prefer to consider more differences when the semantic distance between two word is closer, and vice versa. At last, we weigh up our model against a benchmark set by human similarity judgment, and obtain a much improved result compared with other methods. © 2011 IEEE.

关键词： Semantics

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An application of Fourier-Mellin transform in image registration

An application of Fourier-Mellin transform in image registra...

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Fifth International Conference on Computer and Information Technology, CIT 2005

作者： Guo, Xiaoxin Xu, Zhiwen Lu, Yinan Pang, Yunjie Key Laboratory of Symbol Computation and Knowledge Engineering Jilin University Ministry of Education Qianjin Street 2699 Changchun 130012 China

Fourier-Mellin transform (FMT) is frequently used in content-based image retrieval and digital image watermarking. This paper extends the application of FMT into image registration and proposes an improved registration algorithm based on FMT for the alignment of images differing in translation, rotation angle, and uniform scale factor. The proposed algorithm can eliminate the conversion from Cartesian to log-polar coordinates, avoid the process of interpolation required in the conversion, and obtain a more significant improvement than the conventional method using cross-correlation. Experiments show that the algorithm is accurate and robust regardless of white noise. © 2005 IEEE.

关键词： Fourier transforms

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A study on improved hidden Markov models and applications to speech recognition

A study on improved hidden Markov models and applications to...

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2011 International Conference on Computer Science and Service System, CSSS 2011

作者： Zhang, Zeliang Li, Xiongfei Key Laboratory of Symbol Computation and Knowledge Engineering Ministry of Education Jilin University Changchun China Beihua University Jilin China

ISBN: (纸本)9781424497638

Visual voice lip-reading, so the computer can understand what the speakers want to express direction by looking at their lips. Lip reading is the easiest way to compare the early characters and templates from the frozen image is stored. It ignores the very nature and time changes. This method is very simple, but it's just simple elements can be classified, then it may not show significant speech recognition services. Behavior was characterized by more and more common. Because of the hidden Markov model is superior (HMM), which can be widely used in speech recognition. In recent years, is also used to lip reading identification. Classical HMM model, so that the two assumptions: hidden assumptions collected: in t+1 the state can only be in this country is not in the state before t;from the hidden visible state hypothesis: only by regulating the t hide the visible state, rather than the previous state. This hypothesis is not very useful in some applications (such as lip reading) is reasonable. Under certain conditions, in the t state not only limits the t1, but also t2. Therefore, this study modified the assumptions of the classical HMM to derive a new HMM model and algorithms, and applied to the lip-reading recognition is increasing discrimination. © 2011 IEEE.

关键词： Hidden Markov models

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A Review of dataset and labeling methods for causality extraction 28

A Review of dataset and labeling methods for causality extra...

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28th International Conference on computational Linguistics, COLING 2020

作者： Xu, Jinghang Zuo, Wanli Liang, Shining Zuo, Xianglin College of Computer Science and Technology Jilin University China Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education China

ISBN: (纸本)9781952148279

Causality represents the most important kind of correlation between events. Extracting causality from text has become a promising hot topic in NLP. However, there is no mature research systems, evaluation rules and datasets for public evaluation. Moreover, there is a lack of unified causal sequence labeling methods, which constitute the key factors that hinder the progress of causality extraction research. We survey the limitations and shortcomings of existing causality research field comprehensively from the aspects of basic concepts, extraction methods, experimental data, and labeling methods, so as to provide reference for future research on causality extraction. We summarize the existing causality datasets, explore their practicability and extensibility from multiple perspectives. Aiming at the problem of causal sequence labeling, we analyze the existing methods of causal sequence labeling, with a summarizations of its regulation. Multiple candidate causal labeling sequences are put forward according to labeling controversy to explore the optimal labeling method through experiments, and suggestions are provided for selecting labeling method. © 2020 COLING 2020 - 28th International Conference on computational Linguistics, Proceedings of the Conference. All rights reserved.

关键词： Extraction

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Modeling and refining directional relations based on fuzzy mathematical morphology

Modeling and refining directional relations based on fuzzy m...

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High-Power Diode Laser Technology and Applications IV

作者： Sun, Haibin Li, Wenhui Key Laboratory of Symbol Computation Knowledge Engineering of the Ministry of Education College of Computer Science and Technology Jilin University Changchun 130012 China

ISBN: (纸本)0819461466

In this paper, we investigate the deficiency of Goyal and Egenhofer's method for modeling cardinal directional relations between simple regions and provide the computational model based on the concept of mathematical morphology, which can be a complement and refinement of Goyal and Egenhofer's model for crisp regions. Based on fuzzy set theory, we extend Goyal and Egenhofer's model to handle fuzziness and provide a computational model based on alpha-morphology, which combines fuzzy set theory and mathematical morphology, to refine the fuzzy cardinal directional relations. Then the computational problems are investigated. We also give an example of spatial configuration in 2-dimensional discrete space. The experiment results confirm the cognitive plausibility of our computational models. © Springer-Verlag Berlin Heidelberg 2005.

关键词： Fuzzy sets

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Qualitative spatial relationships cleaning for spatial data mining

Qualitative spatial relationships cleaning for spatial data ...

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International Conference on Machine Learning and Cybernetics, ICMLC 2005

作者： Sun, Hai-Bin Li, Wen-Hui Key Laboratory of Symbol Computation and Knowledge Engineering of the Ministry of Education College of Computer Science and Technology Jilin University Changchun 130012 China

ISBN: (纸本)078039092X

In this article, we investigate the problem of preparing qualitative spatial relations before implementing spatial data mining by checking consistency in a constraint network, which includes topological and cardinal directional relations between pairs of spatial objects. We aim to explore potential spatial relations and possible inconsistency among the data of relationships for enforcing the correctness of spatial data mining. This task is carried out through qualitative spatial reasoning method, specifically consistency checking. We try to lay the theoretical foundation for this kind of problem. Instead of using conventional composition tables, we investigate the interactions between topological and cardinal directional relations with the aid of rules. These rules are shown to be sound, i.e. the deductions are logically correct. Based on these rules, an improved constraint propagation algorithm is introduced to enforce the path consistency. An example is presented to show the utility of these rules. © 2005 IEEE.

关键词： Data mining

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Communities detection with applications to real-world networks analysis

Communities detection with applications to real-world networ...

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2011 7th International Conference on computational Intelligence and Security, CIS 2011

作者： Yang, Bo School of Computer Science and Technology Key Laboratory of Symbol Computation and Knowledge Engineering of the Ministry of Education Jilin University Changchun 130012 China

ISBN: (纸本)9780769545844

Community structure is one of non-trivial topological properties ubiquitously demonstrated in real-world complex networks. Related theories and approaches are of fundamental importance for understanding the functions of networks. Previously, we have proposed a probabilistic algorithm called the NCMA to efficiently as well as effectively mine communities from real-world networks. Here, we show that the NCMA can be readily extended and applied to address a wide range of network oriented applications beyond community detection including ranking, characterizing and searching real-world networks. © 2011 IEEE.

关键词： Complex networks

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