In this paper, we describe a fast semi-automatic segmentation algorithm. A nodes aggregation method is proposed for improving the running time and a Graph-Cuts method is used to model the segmentation problem. The who...
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Sequential pattern mining is one of the most important fields in data mining. In this paper, we propose a novel algorithm FSPAN (Fast Sequential Pattern mining algorithm) to do the sequence mining. FSPAN can mine all ...
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Identification of Transcription Factor Binding Sites (TFBS) from the upstream region of genes remains a highly important and unsolved problem particularly in higher eukaryotic genomes. In this paper, we propose a nove...
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In this paper, we present an efficient method for detecting collisions between highly deformable objects, which is a combination of newly developed stochastic method and Particle Swarm Optimization (PSO) algorithm. Fi...
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In this paper, we investigate the deficiency of Goyal and Egenhofer's method for modeling cardinal directional relations between simple regions and provide the computational model based on the concept of mathemati...
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Identification of transcription factor binding sites from the upstream regions of genes is a highly important and unsolved problem. In this paper, we propose a novel framework for using evolutionary algorithm to solve...
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ISBN:
(纸本)0769525288
Identification of transcription factor binding sites from the upstream regions of genes is a highly important and unsolved problem. In this paper, we propose a novel framework for using evolutionary algorithm to solve this challenging issue. Under this framework, we use two prevalent evolutionary algorithms: Genetic, Algorithm (GA) and Particle Swarm Optimization (PSO) to find unknown sites in a collection of relatively long intergenic sequences that are suspected of being bound by the same factor. This paper represents binding sites motif to position weight matrix (PWM) and introduces how to code PWM to genome for GA and how to code it to particle for PSO. We apply these two algorithms to 5 different yeast Saccharomyces Cerevisiae transcription factor binding sites and CRP binding sites. The results on Saccharomyces Cerevisiae show that it can find the correct binding sites motifs, and the result on CRP shows that these two algorithms can achieve more accuracy than MEME and Gibbs Sampler.
Large scale terrain visualization with high-resolution has an increasing demand in many research fields. To realize the efficient rendering of terrain, this paper presents an out-of-core terrain visualization method b...
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A novel self Adaptive Support Vector Clustering algorithm (ASVC) is proposed in this paper to cluster dataset with diverse dispersions. And a Kernel function is defined to measure affinity between multi-relational dat...
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A Spectrum-based Support Vector Algorithm (SSVA) to resolve semi-supervised classification for relational data is presented in this paper. SSVA extracts data representatives and groups them with spectral analysis. Lab...
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Designing a set of fuzzy neural networks can be considered as solving a multi-objective optimization problem. An algorithm for solving the multi-objective optimization problem is presented based on particle swarm opti...
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