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Robustifying vision transformer for image forgery localization with multi-exit architectures

Pattern Recognition 2025年 164卷

作者： Shi, Zenan Chen, Haipeng Zhang, Dong College of Computer Science and Technology Jilin University Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China Department of Electronic and Computer Engineering The Hong Kong University of Science and Technology 999077 Hong Kong

The proliferation of image manipulation tools has led to an increase in the number of manipulated images being disseminated online, posing risks like the propagation of fake news and telecom fraud. Thus, there is an increasing demand for precise, generic, and robust methods for detecting and locating manipulated images. In this paper, we propose a simple and clean model, named MEAFormer, for image forgery localization that does not heavily rely on pre-trained models. MEAFormer comprises three main components: an encoder network, a neck network, and a decoder network. Specifically, the transformer-based encoder network extracts hierarchical feature representations from the input image, providing rich contextual information in each layer. The neck network, incorporating our proposed cross-layer feature aggregation (CFA), aggregates these hierarchical features. To achieve better spatial feature co-occurrence, instead of using noise or edge artifacts, we introduce a multi-scale graph reasoning (MGR) module within the decoder network via bipartite graphs over the encoder and decoder features in a multi-scale fashion. The cross-level enhancement (CLE) further performs adjacent-level feature fusion to amplify the regions of interest in aggregated manipulation features. Finally, the multi-exit architecture (MEA) guides the model to learn fine-grained features and segment out the manipulated region. Extensive experiments across diverse and challenging datasets conclusively establish the superiority of MEAFormer over existing state-of-the-art methods, excelling in accuracy, generalization, and robustness. © 2025 Elsevier Ltd

关键词： Decoding

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NON-RADIATING ELASTIC SOURCES IN INHOMOGENEOUS ELASTIC MEDIA AT CORNERS WITH APPLICATIONS

arXiv

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arXiv 2025年

作者： Diao, Huaian Geng, Yueran Tang, Ruixiang School of Mathematics Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun China School of Mathematics Jilin University Changchun130012 China Department of Mathematics City University of Hong Kong Kowloon Hong Kong

This paper is concerned with non-radiating elastic sources in inhomogeneous elastic media. We demonstrate that the value of non-radiating elastic sources must vanish at convex corners of their support, provided the sources exhibit Hölder continuous regularity near the corner. Additionally, their gradient must satisfy intricate algebraic relationships with the angles defining the underlying corners, assuming the sources have C1,α regularity with α ∈ (0, 1) in the neighborhood of the corners. To perform microlocal analysis around the corners, we employ the so-called complex geometrical optics (CGO) solutions as test functions within a partial differential system. These characterizations of non-radiating elastic sources in inhomogeneous elastic media at corners enable us to establish the unique identifiability results for determining the position and shape of radiating elastic sources by a single far-field measurement, both locally and globally. The uniqueness result by a single far-field measurement is a challenging problem with a colorful history in inverse scattering. Indeed, when the support of a radiating elastic source is a convex polygon, we can simultaneously determine the shape of the elastic source and its values at the corners, provided the source is Hölder continuous at the corner. Furthermore, when the source function exhibits C1,α regularity in the neighborhood of a corner, the gradient of the source function at that corner can also be generically *** Codes 35Q74, 35R30, 74B05, 86A22 © 2025, CC BY.

关键词： Geometrical optics

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GraCEImpute: A novel graph clustering autoencoder approach for imputation of single-cell RNA-seq data

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Computers in Biology and Medicine 2025年 184卷 109400-109400页

作者： Wang, Yueying Li, Kewei Zhang, Ruochi Fan, Yusi Huang, Lan Zhou, Fengfeng College of Computer Science and Technology Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Jilin Changchun130012 China School of Artificial Intelligence Jilin University Changchun130012 China School of Biology and Engineering Guizhou Medical University Guizhou Guiyang550025 China

Single-cell RNA sequencing (scRNA-seq) technology establishes a unique view for elucidating cellular heterogeneity in various biological systems. Yet the scRNA-seq data is compromised by a high dropout rate due to the technological limitation, and the substantial data loss poses computational challenges on subsequent analyses. This study introduces a novel graph clustering autoencoder (GCAE)-based imputation approach (GraCEImpute) to address the challenge of missing data in scRNA-seq data. Our comprehensive evaluation demonstrates that the GraCEImpute model outperforms existing approaches in accurately imputing dropout zeros within scRNA-seq data. The proposed GraCEImpute model also demonstrates the significantly enhanced quality of downstream scRNA-seq data analyses, including clustering, differential gene expression (DEG) analysis, and cell trajectory inference. These improvements underscore the GraCEImpute model's potential to facilitate a deeper understanding of cellular processes and heterogeneity through the scRNA-seq data analyses. The source code is released at https://***/supp/. © 2024 Elsevier Ltd

关键词： Gene expression

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Incomplete Graph Learning: A Comprehensive Survey

arXiv

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arXiv 2025年

作者： Xia, Riting Liu, Huibo Li, Anchen Liu, Xueyan Zhang, Yan Zhang, Chunxu Yang, Bo College of Computer Science Inner Mongolia University Hohhot010021 China School of Computer Science and Technology Jilin University Jilin Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China

Graph learning is a prevalent field that operates on ubiquitous graph data. Effective graph learning methods can extract valuable information from graphs. However, these methods are non-robust and affected by missing attributes in graphs, resulting in sub-optimal outcomes. This has led to the emergence of incomplete graph learning, which aims to process and learn from incomplete graphs to achieve more accurate and representative results. In this paper, we conducted a comprehensive review of the literature on incomplete graph learning. Initially, we categorize incomplete graphs and provide precise definitions of relevant concepts, terminologies, and techniques, thereby establishing a solid understanding for readers. Subsequently, we classify incomplete graph learning methods according to the types of incompleteness: (1) attribute-incomplete graph learning methods, (2) attribute-missing graph learning methods, and (3) hybrid-absent graph learning methods. By systematically classifying and summarizing incomplete graph learning methods, we highlight the commonalities and differences among existing approaches, aiding readers in selecting methods and laying the groundwork for further advancements. In addition, we summarize the datasets, incomplete processing modes, evaluation metrics, and application domains used by the current methods. Lastly, we discuss the current challenges and propose future directions for incomplete graph learning, with the aim of stimulating further innovations in this crucial field. To our knowledge, this is the first review dedicated to incomplete graph learning, aiming to offer valuable insights for researchers in related fields.1 Copyright © 2025, The Authors. All rights reserved.

关键词： knowledge graph

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WGAN-GP_Glu: A semi-supervised model based on double generator-Wasserstein GAN with gradient penalty algorithm for glutarylation site identification

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Computers in Biology and Medicine 2025年 184卷 109328-109328页

作者： Ning, Qiao Qi, Zedong Information Science and Technology Dalian Maritime University Liaoning Dalian China The School of Artificial Intelligence and Computer Science Jiangnan University Wuxi China Neusoft Education Technology Group Dalian China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China

As an important post-translational modification, glutarylation plays a crucial role in a variety of cellular functions. Recently, diverse computational methods for glutarylation site identification have been proposed. However, the class imbalance problem due to data noise and uncertainty of non-glutarylation sites remains a great challenge. In this article, we propose a novel semi-supervised learning algorithm, called WGAN-GP_Glu, for identifying reliable non-glutarylation lysine sites from those without glutarylation annotation. WGAN-GP_Glu method is a multi-module framework algorithm, which mainly includes a reliable negative sample selection module, a deep feature extraction module, and a glutarylation site prediction module. In reliable negative sample selection module, we design an improved method of Wasserstein GAN with Gradient Penalty (WGAN-GP), named ReliableWGAN-GP, including three parts, two generators G1, G2 and a discriminator D, which can select reliable non-glutarylation samples from a great number of unlabeled samples. Generator G1 is utilized to generate noise data from unlabeled samples. For generator G2, both the positive sample and the noise data are used as inputs to improve the discriminant capability of discriminator D. Then, convolutional neural network and bidirectional long short-term memory network combined with attention mechanism are utilized to extract deep features for glutarylation samples and reliable non-glutarylation samples. Finally, a glutarylation site prediction module based on the three-layer fully connected layer is designed to make class predictions for samples. The sensitivity, specificity, accuracy and Matthew correlation coefficient of WGAN-GP_Glu on the independent test data set reach 90.58 %, 95.82 %, 94.44 % and 0.8645, respectively, which surpassed the existing methods for glutarylation sites prediction. Therefore, WGAN-GP_Glu can serve as a powerful tool in identifying glutarylation sites and the ReliableWGAN-GP algo

关键词： Gallium nitride

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Scalable Precise computation of Shannon Entropy

arXiv

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arXiv 2025年

作者： Lai, Yong Tong, Haolong Xu, Zhenghang Yin, Minghao College of Computer Science and Technology Jilin University Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin University Changchun130012 China School of Computer Science and Information Technology Northeast Normal University Changchun130017 China

Quantitative information flow analyses (QIF) are a class of techniques for measuring the amount of confidential information leaked by a program to its public outputs. Shannon entropy is an important method to quantify the amount of leakage in QIF. This paper focuses on the programs modeled in Boolean constraints and optimizes the two stages of the Shannon entropy computation to implement a scalable precise tool PSE. In the first stage, we design a knowledge compilation language called ADD[∧] that combines Algebraic Decision Diagrams and conjunctive decomposition. ADD[∧] avoids enumerating possible outputs of a program and supports tractable entropy computation. In the second stage, we optimize the model counting queries that are used to compute the probabilities of outputs. We compare PSE with the state-of-the-art probably approximately correct tool EntropyEstimation, which was shown to significantly outperform the existing precise tools. The experimental results demonstrate that PSE solved 55 more benchmarks compared to EntropyEstimation in a total of 441. For 98% of the benchmarks that both PSE and EntropyEstimation solved, PSE is at least 10× as efficient as EntropyEstimation. Copyright © 2025, The Authors. All rights reserved.

关键词： Information leakage

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IEEE Transactions on Computational Biology and Bioinformatic...

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IEEE Transactions on computational Biology and Bioinformatics 2025年第1期22卷 203-215页

作者： Ruijie Li Qiao Ning Yaomiao Zhao Shikai Guo Hui Li Department of Information Science and Technology Dalian Maritime University Dalian China DUT Artificial Intelligence Institute Dalian China Dalian Key Laboratory of Artificial Intelligence Dalian China School of Artificial Intelligence and Computer Science Jiangnan University Wuxi China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun China School of Computer Science and Engineering Northeastern University Shenyang China

In recent years, microRNA (miRNA) has been recognized as crucial in the progression of human diseases. However, existing computational methods for identifying miRNA-disease associations often overlook the rich association information contained in specific long-distance pathways and lack effective exploration of potential associations. In this study, we propose a biologically interpretable “similarity-association-similarity” metapath and heterogeneous-hyper network (HeteroHyperNet) learning approach for miRNA-disease association prediction (MHMDA). In MHMDA, a “similarity-association-similarity” multi-hop metapaths learning method based on hierarchical attention perception is proposed to explore specific long-distance associated pathway information connecting potentially associated miRNAs and diseases. In addition, a HeteroHyperNet learning approach integrating heterogeneous network and hyper network is designed to progressively learn direct association information and potential association information between miRNA and disease. The “similarity-association-similarity” metapath with hierarchical attention significantly enhances the learning of long-distance biological associations, while the HeteroHyperNet comprehensively learns the known and potential associations of miRNA-disease, greatly improving the richness and accuracy of information. A large number of experimental results show that MHMDA has demonstrated excellent performance in the prediction of miRNA-disease association. In addition, cross independent dataset experiment and cold start experiment on miRNA and disease prove the effectiveness of MHMDA on sparse association points, and its stability and reliability in predicting potential miRNA-disease association are further confirmed.

关键词： Diseases Predictive models Autoencoders Feature extraction Biological system modeling Bioinformatics Kernel computational biology Heterogeneous networks Accuracy

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TFS-Net: Temporal first simulation network for video saliency prediction

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Expert Systems with Applications 2025年 282卷

作者： Li, Longyi Dong, Liyan Zhang, Hao Qin, Jun Zhang, Zhengtai Sun, Minghui Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Jilin Changchun130012 China College of Computer Science and Technology Jilin University Changchun130012 China School of Computer Science and Technology Changchun University of Science and Technology Changchun130013 China Research Institute of Jilin University in Shenzhen Shenzhen China

Video saliency prediction (VSP) plays a critical role in modern video processing systems by optimizing computational resource allocation and enhancing overall system performance. However, existing VSP methods either lack effective temporal modeling or incur high computational costs, particularly struggling with the initialization of video sequences. This paper presents TFS-Net, a novel temporal-first simulation network for VSP that integrates both static and dynamic modeling via parallel-optimized self-attention mechanisms. Specifically, TFS-Net addresses the challenge of initial frame processing with the innovative F31 algorithm and improves multi-scale spatiotemporal feature integration through a Hierarchical Decoder with Multi-dimensional Attention (HDMA). Drawing inspiration from primate saccadic behavior, the F31 algorithm optimizes processing efficiency during both training and inference phases, demonstrating particular effectiveness in unmanned aerial vehicle (UAV) real-time applications. Extensive evaluations on public datasets demonstrate that TFS-Net achieves significant improvements over state-of-the-art methods, with gains of 14.6%, 12.0%, and 11.2% in AUC-J, CC, and SIM metrics, respectively. Further experiments on UAV video analysis validate the model's robustness and practicality in real-world scenarios. © 2025

关键词： Spatio-temporal data

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Sfmfold: A Multi-Modal Contrast Learning Model for Rna Secondary Structure Prediction

SSRN

引用

SSRN 2025年

作者： Li, Ang Liu, Yuanning Zhang, Zhaoyang Li, Shuwang Dong, Hao Lv, Meng College of Computer Science and Technology Jilin University Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China College of Software Jilin University Changchun130012 China College of Information Engineering Chang’an University Xi’an710064 China

The secondary structure of RNA can regulate the interaction between RNA and protein and perform various biological tasks through specific folding shapes, which plays an important role in revealing biomolecular mechanisms and developing new vaccines and therapeutic drugs. However, existing RNA secondary structure prediction methods based on thermodynamics and traditional neural network models usually lack the ability to model long-distance dependencies of RNA molecules and cannot handle complex non-nested structures in RNA molecules. In this paper, we propose a multi-modal contrastive learning method SFMFold based on state space model, which captures long-distance interactions in RNA sequences through RNA sequence representation learning part, and models the structure of RNA molecules through RNA structure representation learning part. Finally, the features of the two modalities are aligned and deeply fused to obtain the final RNA molecule prediction map. We test SFMFold on several datasets, and the experiments show that our proposed model shows excellent performance in cross-family prediction and long sequence prediction tasks. In addition, SFMFold can also effectively predict non-nested structures such as pseudoknot with better accuracy than the SOTA methods. © 2025, The Authors. All rights reserved.

关键词： Prediction models

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Optimizing Human Pose Estimation Through Focused Human and Joint Regions

arXiv

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arXiv 2025年

作者： Jiao, Yingying Wang, Zhigang Liu, Zhenguang Fan, Shaojing Wu, Sifan Wu, Zheqi Xu, Zhuoyue College of Computer Science and Technology Jilin University China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University China College of Computer Science and Technology Zhejiang Gongshang University China The State Key Laboratory of Blockchain and Data Security Zhejiang University China Institute of Blockchain and Data Security China School of Computing National University of Singapore Singapore

Human pose estimation has given rise to a broad spectrum of novel and compelling applications, including action recognition, sports analysis, as well as surveillance. However, accurate video pose estimation remains an open challenge. One aspect that has been overlooked so far is that existing methods learn motion clues from all pixels rather than focusing on the target human body, making them easily misled and disrupted by unimportant information such as background changes or movements of other people. Additionally, while the current Transformer-based pose estimation methods has demonstrated impressive performance with global modeling, they struggle with local context perception and precise positional identification. In this paper, we try to tackle these challenges from three aspects: (1) We propose a bilayer Human-keypoint Mask module that performs coarse-to-fine visual token refinement, which gradually zooms in on the target human body and keypoints while masking out unimportant figure regions. (2) We further introduce a novel deformable cross attention mechanism and a bidirectional separation strategy to adaptively aggregate spatial and temporal motion clues from constrained surrounding contexts. (3) We mathematically formulate the deformable cross attention, constraining that the model focuses solely on the regions centered at the target person body. Empirically, our method achieves state-of-the-art performance on three large-scale benchmark datasets. A remarkable highlight is that our method achieves an 84.8 mean Average Precision (mAP) on the challenging wrist joint, which significantly outperforms the 81.5 mAP achieved by the current state-of-the-art method on the PoseTrack2017 dataset. Copyright © 2025, The Authors. All rights reserved.

关键词： Benchmarking

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