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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Wang, Zhe Wei, Fangyue Guo, Shuyu Che, Xiaoting Bai, Tian Jilin University College of Computer Science and Technology Changchun China Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Changchun China

ISBN: (纸本)9798350337488

The accurate automatic recognition of cell locations is of great significance for downstream tasks in pathology. Due to the various size and distribution of different cell types, previous cell detection methods applied fixed circles as labels to localize cell position by default, which makes less precise and more difficult to adapt various cell morphology. In this paper, we integrate adaptive areas of interests based on morphology to address the limitation in detecting cells with irregular shapes in pathological images. Moreover, a EGSI module is proposed to extract global distribution of cells in slices, which enables model to acquire more rich semantic information. We exhibit favorable F1 score of our method on four public datasets. Experimental results demonstrate that the proposed method could detect cells more accurately in those images with different cell morphologies and dense cell distribution. © 2023 IEEE.

关键词： cell detection cellular morphology digital pathology medical image analysis

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Enhancing Nested Named Entity Recognition in Chinese EMRs: A Collaborative Approach

Enhancing Nested Named Entity Recognition in Chinese EMRs: A...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Yue, Hongtao Feng, Xiaoyue Xu, Hanchi Chu, Haoxuan Wang, Yushi Guan, Renchu Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education College of Computer Science and Technology Changchun China First Hospital Jilin University Cardiovascular Center Changchun China

ISBN: (纸本)9798350386226

Named entity recognition (NER) in electronic medical records (EMRs) is critical for identifying medical entities, constructing medical knowledge graphs, and supporting clinical decision-making. However, the scarcity of EMR datasets and the challenges posed by the complexity of Chinese medical texts hinder progress in this area. To address these issues, we introduce CMR-NER, a nested named entity recognition model that enhances entity prediction by integrating multiple features and considering a global view of entity boundaries. Leveraging the robust generalization capabilities of the large language model, CMR-NER involves collaboration with medical experts to ensure accuracy and reduce annotation costs. Additionally, we present HF-NER, a high-quality dataset specifically curated for Chinese EMR entity recognition focusing on heart failure. This dataset, constructed through a methodology combining ChatGPT's capabilities and expert validation, is a significant contribution to the field. It facilitates a comprehensive evaluation of CMR-NER. Experimental results demonstrate that our approach achieves comparable or superior performance to existing methods, underscoring its effectiveness in this challenging domain. © 2024 IEEE.

关键词： Electronic health record

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A frequency and two-hop configuration checking-driven local search algorithm for the minimum weakly connected dominating set problem

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Neural computing and Applications 2024年第22期36卷 13833-13852页

作者： Li, Ruizhi He, Jintao Lin, Cuisong Liu, Ying Hu, Shuli Yin, Minghao Jilin University of Finance and Economics Changchun130117 China Northeast Normal University Changchun130117 China Business Big Data Research Center of Jilin Province Changchun130117 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China

The minimum weakly connected dominating set problem is a typical NP-hard problem with a wide range of applications. To solve this problem, we propose a frequency property and two-hop configuration checking strategy-driven local search algorithm (FCC2LS). In this algorithm, we first propose a lock-vertex-based initial solution construction procedure. This procedure guarantees that certain vertices, which must be included in the optimal solution, are added to the solution. Second, we propose a two-hop configuration checking strategy and a frequency property. The two-hop configuration checking strategy is a new variant of the original configuration checking strategy, which prohibits vertices with unchanged configuration from being added to the candidate solution. The frequency property is used to record the number of times for each vertex is added to the solution, which can increase the diversity of selected vertices. Third, we combine two scoring functions, Dscore and Nscore, with the above strategies and propose effective vertex selection methods to help the algorithm select suitable vertices to add into or remove from the candidate solutions. Finally, we evaluate the proposed algorithm FCC2LS with four state-of-the-art algorithms on four groups of benchmark instances. Experimental results show that our algorithm performs better on four classical benchmark instances. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2024.

关键词： Combinatorial optimization

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Transformer-based multi-level attention integration network for video saliency prediction

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Multimedia Tools and Applications 2025年第13期84卷 11833-11854页

作者： Tan, Rui Sun, Minghui Liang, Yanhua Software College Jilin University Qianjin Street Jilin Changchun130012 China College of Computer Science and Technology Jilin University Qianjin Street Jilin Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Qianjin Street Jilin Changchun130012 China

Most existing models for video saliency prediction heavily rely on 3D convolutional operations to extract spatio-temporal features. However, it is worth noting that 3D convolution produces a local receptive field, which may struggle to capture long-range spatio-temporal dependencies effectively. To compensate for such shortage, this paper introduces a novel approach called the Transformer-based Multi-level Attention Integration Network (TMAI-Net) for video saliency prediction. TMAI-Net is designed as a two-stream encoder-decoder model, carefully integrating multi-level features of semantic information. Our model incorporates a Multi-level Interactive Attention(MLIA) module and a Transformer, both implemented based on self-attention mechanism, which are placed at different levels of the model to capture long-range spatio-temporal feature dependencies. Additionally, our model operates on input video frames and attentional patches, allowing the Transformer module to capture structural similarities between related objects in global features and attention features. This, in turn, enables the model to allocate increased attention to salient areas. The efficacy of our proposed approach is validated through extensive experiments conducted on three widely recognized benchmark datasets. © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2024.

关键词： Forecasting

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A Graph Attribute Aggregation Method based on Feature engineering

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Journal of The Institution of Engineers (India): Series B 2022年第3期103卷 711-719页

作者： Wang, Hao Dong, Li-Yan Ma, Xin-Tao Sun, Ming-Hui College of Computer Science and Technology Jilin University Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China

In the fields of social network analysis and knowledge graph, many semi-supervised learning algorithms based on graph convolutional neural network (GCN) have been widely used. Most of these algorithms usually improve the structure of the neural network and the sampling method of each layer of the neural network. However, they don’t pay much attention to the data pre-processing of the algorithm. In the analysis of the input data, the words of different quality in these original data are unevenly distributed. This may obscure some useful data and highlight some irrelevant data. In order to verify the correctness of this hypothesis, the paper proposes a feature matrix compression algorithm (FMC algorithm) for data pre-processing of GCN-based algorithms. The algorithm analyzes and arranges the word columns of the input matrix (the feature of graph) according to the frequency of the word, then merges those words in which the word frequency is smaller, so as to emphasize the role of these words in the graph and optimize the data scale. The present work uses four mainstream datasets in the field and several representative and different algorithms to complete the experiment. The experimental results show that the FMC algorithm achieves better performance. © 2021, The Institution of Engineers (India).

关键词： Learning algorithms

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A Sparse Optical Flow Method for Camera Tracking under Fisheye Camera Models 5

A Sparse Optical Flow Method for Camera Tracking under Fishe...

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5th International Conference on Frontiers Technology of Information and Computer, ICFTIC 2023

作者： Zhang, Zuoming Wang, Xin College of Computer Science and Technology Jilin China College of Computer Science and Technology Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Jilin China

ISBN: (纸本)9798350309034

In computer image processing, optical flow is a classic task used to track the motion of pixels. In the field of robotics, methods like SLAM extensively employ sparse optical flow as a substitute for time-consuming feature point matching methods, enabling rapid and stable camera tracking. However, the widespread use of fisheye cameras introduces distortion issues in practical applications. Traditional sparse optical flow struggles to accurately track pixel positions in such scenarios, affecting the precision of camera pose tracking. Therefore, we introduce a sparse optical flow method designed for fisheye camera models, which correctly utilizes prior information obtained during camera tracking to enhance the accuracy of sparse optical flow. Finally, we propose a scheme for constructing a semi-distortion lookup table to accelerate distortion operations and reduce memory requirements. We conducted extensive testing on simulated datasets with various camera motion scenarios, and the experimental results demonstrate that our method outperforms OpenCV in terms of accuracy and versatility. © 2023 IEEE.

关键词： camera tracking component distortion fisheye camera model optical flow

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An Evolutionary Multitasking Algorithm for Efficient Multiobjective Recommendations

IEEE Transactions on Artificial Intelligence

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IEEE Transactions on Artificial Intelligence 2025年第3期6卷 518-532页

作者： Tian, Ye Ji, Luke Hu, Yiwei Ma, Haiping Wu, Le Zhang, Xingyi Anhui University Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Computer Science and Technology Hefei230601 China Anhui University Institutes of Physical Science and Information Technology Hefei230601 China Hefei University of Technology Key Laboratory of Knowledge Engineering with Big Data Hefei230029 China

Represented by evolutionary algorithms and swarm intelligence algorithms, nature-inspired metaheuristics have been successfully applied to recommender systems and amply demonstrated effectiveness, in particular, for multiobjective recommendation. Owing to the population-based search paradigm, these algorithms can produce a number of recommendation lists, making diverse tradeoffs between multiple metrics and meeting the requirements of accuracy, novelty, diversity, and other user preferences. However, these algorithms are criticized for the low efficiency of the optimization process, especially when the number of users is large. To address this issue, this article proposes an evolutionary multitasking-based recommendation method, where each task corresponds to a user and all the tasks are optimized simultaneously, thus highly improving the efficiency of recommendation. To enhance the convergence speed, all the users are divided into multiple populations according to the similarity between their preferences, where each population evolves with internal knowledge transfer between users, and all the populations evolve with external knowledge transfer between populations. Experimental results on various datasets verify that the proposed method can better balance between multiple metrics than classical and deep neural network-based recommendation methods and exhibits significantly higher efficiency than evolutionary multiobjective optimization-based recommendation methods. © 2024 IEEE. All rights reserved.

关键词： Multiobjective optimization

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Robust Federated Semi-Supervised Learning for Medical Image Classification via Pseudo-Label Filtering

Robust Federated Semi-Supervised Learning for Medical Image ...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Wang, Ziwei Guo, Shuyu Zhu, Mingzhu Bai, Tian Jilin University College of Software Changchun China Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Changchun China Jilin University College of Computer Science and Technology Changchun China

ISBN: (纸本)9798350386226

Federated learning (FL) enables collaborative model training across multiple medical institutions to ensure data security. However, due to the variations in medical imaging equipment and regions at different medical institutions, FL methods usually suffer from insufficient data annotations and irrelevant noise within private datasets. To address these issues, a robust federated semi-supervised learning method via pseudo-label filtering (PFRFed) is introduced to utilize unlabeled data while mitigating the impact of noise data. Compared with existing federated semi-supervised learning methods, we propose a pseudo-label filtering mechanism with double dynamic thresholds, which allows the model to adopt more unlabeled data by adjusting the confidence and entropy thresholds at each stage of model training. Moreover, to reduce the degradation caused by noise data in private datasets from different clients, a noise-tolerant loss function and a grouping aggregation method based on the local model similarity are employed. The comparative experiments demonstrate the effectiveness of PFRFed, which has achieved the best classification accuracy of 95.20% and 88.72% on two public medical datasets. Also, PFRFed exhibits heightened resilience to variations in noisy data ratio and labeled data ratio, reaffirming its versatility and robustness. © 2024 IEEE.

关键词： Federated learning

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TS-Net: Two-stage deformable medical image registration network based on new smooth constraints

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Magnetic Resonance Imaging 2023年 99卷 26-33页

作者： Song, Lei Ma, Mingrui Liu, Guixia College of Computer Science and Technology Jilin University Jilin Changchun 130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Jilin Changchun 130012 China

Medical image registration can establish the spatial consistency of the corresponding anatomical structures between different medical images, which is important in medical image analysis. In recent years, with the rapid development of deep learning, the image registration methods based on deep learning greatly improve the speed, accuracy, and robustness of registration. Regrettably, these methods typically do not work well for large deformations and complex deformations in the image, and neglect to preserve the topological properties of the image during deformation. Aiming at these problems, we propose a new network TS-Net that learns deformation from coarse to fine and transmits information of different scales in the two stages. Two-stage network learning deformation from coarse to fine can gradually learn the large and complex deformations in images. In the second stage, the feature maps downsampled in the first stage for skip connection can expand the local receptive field and obtain more local information. The smooth constraints function used in the past is to impose the same restriction on the global, which is not targeted. In this paper, we propose a new smooth constraints function for each voxel deformation, which can better ensure the smoothness of the transformation and maintain the topological properties of the image. The experiments on brain datasets with complex deformations and heart datasets with large deformations show that our proposed method achieves better results while maintaining the topological properties of deformations compared to existing deep learning-based registration methods. © 2023 Elsevier Inc.

关键词： CNN Deformable image registration Smooth loss Two stage Unsupervised learning

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Dual-level Mixup for Graph Few-shot Learning with Fewer Tasks 25

Dual-level Mixup for Graph Few-shot Learning with Fewer Task...

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34th ACM Web Conference, WWW 2025

作者： Liu, Yonghao Li, Mengyu Giunchiglia, Fausto Huang, Lan Li, Ximing Feng, Xiaoyue Guan, Renchu College of Computer Science and Technology Jilin University Changchun China Department of Information Engineering and Computer Science University of Trento Trento Italy Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education China

ISBN: (纸本)9798400712746

Graph neural networks have been demonstrated as a powerful paradigm for effectively learning graph-structured data on the web and mining content from it. Current leading graph models require a large number of labeled samples for training, which unavoidably leads to overfitting in few-shot scenarios. Recent research has sought to alleviate this issue by simultaneously leveraging graph learning and meta-learning paradigms. However, these graph meta-learning models assume the availability of numerous meta-training tasks to learn transferable meta-knowledge. Such assumption may not be feasible in the real world due to the difficulty of constructing tasks and the substantial costs involved. Therefore, we propose a SiMple yet effectIve approach for graph few-shot Learning with fEwer tasks, named SMILE. We introduce a dual-level mixup strategy, encompassing both within-task and across-task mixup, to simultaneously enrich the available nodes and tasks in meta-learning. Moreover, we explicitly leverage the prior information provided by the node degrees in the graph to encode expressive node representations. Theoretically, we demonstrate that SMILE can enhance the model generalization ability. Empirically, SMILE consistently outperforms other competitive models by a large margin across all evaluated datasets with in-domain and cross-domain settings. Our anonymous code can be found here. © 2025 Copyright held by the owner/author(s).

关键词： Graph neural networks

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