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arXiv 2023年

作者： Peletier, R.F. Abdalla, H. Abe, H. Abe, S. Abusleme, A. Acero, F. Acharyya, A. Acín Portella, V. Ackley, K. Adam, R. Adams, C. Adhikari, S.S. Aguado-Ruesga, I. Agudo, I. Aguilera, R. Aguirre-Santaella, A. Aharonian, F. Alberdi, A. Alfaro, R. Alfaro, J. Alispach, C. Aloisio, R. Alves Batista, R. Amans, J.-P. Amati, L. Amato, E. Ambrogi, L. Ambrosi, G. Ambrosio, M. Ammendola, R. Anderson, J. Anduze, M. Angüner, E.O. Antonelli, L.A. Antonuccio, V. Antoranz, P. Anutarawiramkul, R. Aragunde Gutierrez, J. Aramo, C. Araudo, A. Araya, M. Arbet-Engels, A. Arcaro, C. Arendt, V. Armand, C. Armstrong, T. Arqueros, F. Arrabito, L. Arsioli, B. Artero, M. Asano, K. Ascasíbar, Y. Aschersleben, J. Ashley, M. Attinà, P. Aubert, P. Singh, C.B. Baack, D. Babic, A. Backes, M. Baena, V. Bajtlik, S. Baktash, A. Balazs, C. Balbo, M. Ballester, O. Ballet, J. Balmaverde, B. Bamba, A. Bandiera, R. Baquero Larriva, A. Barai, P. Barbier, C. Barbosa Martins, V. Barcelo, M. Barkov, M. Barnard, M. Baroncelli, L. Barres de Almeida, U. Barrio, J.A. Bastieri, D. Batista, P.I. Batkovic, I. Bauer, C. Bautista-González, R. Baxter, J. Becciani, U. Becerra González, J. Becherini, Y. Beck, G. Becker Tjus, J. Bednarek, W. Belfiore, A. Bellizzi, L. Belmont, R. Benbow, W. Berge, D. Bernardini, E. Bernardos, M.I. Bernlöhr, K. Berti, A. Berton, M. Bertucci, B. Beshley, V. Bhatt, N. Bhattacharyya, S. Bhattacharyya, W. Bhattacharyya, S. Bi, B. Bicknell, G. Biederbeck, N. Bigongiari, C. Biland, A. Bird, R. Bissaldi, E. Biteau, J. Bitossi, M. Blanch, O. Blank, M. Blazek, J. Bobin, J. Boccato, C. Bocchino, F. Boehm, C. Bohacova, M. Boisson, C. Boix, J. Bolle, J.-P. Bolmont, J. Bonanno, G. Bonavolontà, C. Bonneau Arbeletche, L. Bonnoli, G. Bordas, P. Borkowski, J. Bórquez, S. Bose, R. Bose, D. Bosnjak, Z. Bottacini, E. Böttcher, M. Botticella, M.T. Boutonnet, C. Bouyjou, F. Bozhilov, V. Bozzo, E. Brahimi, L. Braiding, C. Brau-Nogué, S. Breen, S. Bregeon, J. Breuhaus, M. Bernoulli Institute for Mathematics Computer Science and Artificial Intelligence University of Groningen PO Box 407 GroningenNL-9700 AK Netherlands Centre for Space Research North-West University Potchefstroom2520 South Africa Institute for Cosmic Ray Research University of Tokyo 5-1-5 Kashiwa-no-ha Chiba Kashiwa277-8582 Japan Pontificia Universidad Católica de Chile Av. Libertador Bernardo O'Higgins 340 Santiago Chile AIM CEA CNRS Université Paris-Saclay Université Paris Diderot Sorbonne Paris Cité CEA Paris-Saclay IRFU/DAp Bat 709 Orme des Merisiers Gif-sur-Yvette91191 France Centre for Advanced Instrumentation Dept. of Physics Durham University South Road DurhamDH1 3LE United Kingdom Port d'Informació Científica Edifici D Carrer de l'Albareda Bellaterrra Cerdanyola del Vallès08193 Spain School of Physics and Astronomy Monash University MelbourneVIC3800 Australia Laboratoire Leprince-Ringuet École Polytechnique UMR 7638 CNRS IN2P3 Institut Polytechnique de Paris Palaiseau91128 France Department of Physics Columbia University 538 West 120th Street New YorkNY10027 United States University of Oslo Department of Physics Sem Saelandsvei 24 - PO Box 1048 Blindern OsloN-0316 Norway EMFTEL department IPARCOS Universidad Complutense de Madrid Madrid28040 Spain Instituto de Astrofísica de Andalucía-CSIC Glorieta de la Astronomía s/n Granada18008 Spain Campus UAB Carrer de Can Magrans s/n Cerdanyola del Vallés08193 Spain Instituto de Física Teórica UAM/CSIC Departamento de Física Teórica Universidad Autónoma de Madrid Campus de Cantoblanco UAM c/Nicolás Cabrera 13-15 Madrid28049 Spain Dublin Institute for Advanced Studies 31 Fitzwilliam Place Dublin 2 Ireland Universidad Nacional Autónoma de México Delegación Coyoacán Ciudad de México04510 Mexico University of Geneva Département de Physique Nucléaire et Corpusculaire 24 rue du Général-Dufour Genève 41211 Switzerland INFN Dipartimento di Scienze Fisiche e Chimiche Univer

The Cherenkov Telescope Array (CTA) is the future observatory for ground-based imaging atmospheric Cherenkov telescopes. Each telescope will provide a snapshot of gamma-ray induced particle showers by capturing the induced Cherenkov emission at ground level. The simulation of such events provides camera images that can be used as training data for convolutional neural networks (CNNs) to differentiate signals from background events and to determine the energy of the initial gamma-ray events. Pattern spectra are commonly used tools for image classification and provide the distributions of the sizes and shapes of features comprising an image. The application of pattern spectra on a CNN allows the selection of relevant combinations of features within an image. In this work, we generate pattern spectra from simulated gamma-ray images to train a CNN for signal-background separation and energy reconstruction for CTA. We compare our results to a CNN trained with CTA images and find that the pattern spectra-based analysis is computationally less expensive but not competitive with the purely CTA images-based analysis. Thus, we conclude that the CNN must rely on additional features in the CTA images not captured by the pattern spectra. © 2023, CC BY.

关键词： Gamma rays

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Author Correction: Federated learning enables big data for rare cancer boundary detection

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Nature communications 2023年第1期14卷 436页

作者： Sarthak Pati Ujjwal Baid Brandon Edwards Micah Sheller Shih-Han Wang G Anthony Reina Patrick Foley Alexey Gruzdev Deepthi Karkada Christos Davatzikos Chiharu Sako Satyam Ghodasara Michel Bilello Suyash Mohan Philipp Vollmuth Gianluca Brugnara Chandrakanth J Preetha Felix Sahm Klaus Maier-Hein Maximilian Zenk Martin Bendszus Wolfgang Wick Evan Calabrese Jeffrey Rudie Javier Villanueva-Meyer Soonmee Cha Madhura Ingalhalikar Manali Jadhav Umang Pandey Jitender Saini John Garrett Matthew Larson Robert Jeraj Stuart Currie Russell Frood Kavi Fatania Raymond Y Huang Ken Chang Carmen Balaña Jaume Capellades Josep Puig Johannes Trenkler Josef Pichler Georg Necker Andreas Haunschmidt Stephan Meckel Gaurav Shukla Spencer Liem Gregory S Alexander Joseph Lombardo Joshua D Palmer Adam E Flanders Adam P Dicker Haris I Sair Craig K Jones Archana Venkataraman Meirui Jiang Tiffany Y So Cheng Chen Pheng Ann Heng Qi Dou Michal Kozubek Filip Lux Jan Michálek Petr Matula Miloš Keřkovský Tereza Kopřivová Marek Dostál Václav Vybíhal Michael A Vogelbaum J Ross Mitchell Joaquim Farinhas Joseph A Maldjian Chandan Ganesh Bangalore Yogananda Marco C Pinho Divya Reddy James Holcomb Benjamin C Wagner Benjamin M Ellingson Timothy F Cloughesy Catalina Raymond Talia Oughourlian Akifumi Hagiwara Chencai Wang Minh-Son To Sargam Bhardwaj Chee Chong Marc Agzarian Alexandre Xavier Falcão Samuel B Martins Bernardo C A Teixeira Flávia Sprenger David Menotti Diego R Lucio Pamela LaMontagne Daniel Marcus Benedikt Wiestler Florian Kofler Ivan Ezhov Marie Metz Rajan Jain Matthew Lee Yvonne W Lui Richard McKinley Johannes Slotboom Piotr Radojewski Raphael Meier Roland Wiest Derrick Murcia Eric Fu Rourke Haas John Thompson David Ryan Ormond Chaitra Badve Andrew E Sloan Vachan Vadmal Kristin Waite Rivka R Colen Linmin Pei Murat Ak Ashok Srinivasan J Rajiv Bapuraj Arvind Rao Nicholas Wang Ota Yoshiaki Toshio Moritani Sevcan Turk Joonsang Lee Snehal Prabhudesai Fanny Morón Jacob Mandel Konstantinos Kamnitsas Ben Glocker Luke V M Dixon Matthew Williams Peter Zamp Center for Biomedical Image Computing and Analytics (CBICA) University of Pennsylvania Philadelphia PA USA. Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA. Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA. Department of Informatics Technical University of Munich Munich Bavaria Germany. Intel Corporation Santa Clara CA USA. Department of Neuroradiology Heidelberg University Hospital Heidelberg Germany. Clinical Cooperation Unit Neuropathology German Cancer Consortium (DKTK) within the German Cancer Research Center (DKFZ) Heidelberg Germany. Department of Neuropathology Heidelberg University Hospital Heidelberg Germany. Division of Medical Image Computing German Cancer Research Center Heidelberg Germany. Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Heidelberg Germany. Neurology Clinic Heidelberg University Hospital Heidelberg Germany. Department of Radiology & Biomedical Imaging University of California San Francisco San Francisco CA USA. Symbiosis Center for Medical Image Analysis Symbiosis International University Pune Maharashtra India. Department of Neuroimaging and Interventional Radiology National Institute of Mental Health and Neurosciences Bangalore Karnataka India. Department of Radiology School of Medicine and Public Health University of Wisconsin Madison WI USA. Department of Medical Physics School of Medicine and Public Health University of Wisconsin Madison WI USA. Leeds Teaching Hospitals Trust Department of Radiology Leeds UK. Department of Radiology Brigham and Women's Hospital Harvard Medical School Boston MA USA. Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Charlestown MA USA. Catalan Institute of Oncology Badalona Spain. Consorci MAR Parc de Salut de Barcelona Catalonia Spain. Department of Radiology (IDI

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HEp-2 specimen classification via deep CNNs and pattern histogram

HEp-2 specimen classification via deep CNNs and pattern hist...

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International Conference on Pattern Recognition

作者： Hongwei Li Hao Huang Wei-Shi Zheng Xiaohua Xie Jianguo Zhang Ministry of Education Key Laboratory of Machine Intelligence and Advanced Computing China School of Data and Computer Science Sun Yat-sen University Gnangzhou China Computing Schoool of Science and Engineering University of Dundee United Kindom

ISBN: (纸本)9781509048489

Automatic classification of Human Epithelial Type-2 (HEp-2) specimen patterns is an important yet challenging problem in medical image analysis. Most prior works have primarily focused on cells images classification problem which is one of the early essential steps in the system pipeline, while less attention has been paid to the classification of whole-specimen ones. In this work, a specimen pattern recognition system combining convolutional neural networks (CNNs) and pattern histogram was proposed. The pattern histograms were obtained based on the prediction of each single cell inside the specimens. Two strategies were designed to predicted the pattern of a whole specimen: 1) the most dominant cell pattern in pattern histogram was represented as the specimen pattern, 2) the pattern histograms were employed as bags of patterns and then were trained and predicted separately by a SVM classifier. Experimental results show that the proposed system is effective and achieves high classification accuracy on public benchmark datasets. We further evaluate the robustness of the proposed framework by testing trained CNNs on another different dataset, demonstrating that the system is robust to inter-lab data.

关键词： Histograms Support vector machines Feature extraction Training Image segmentation Convolution Neural networks

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A hybrid evolutionary algorithm with dual populations for many-objective optimization

A hybrid evolutionary algorithm with dual populations for ma...

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Congress on Evolutionary Computation

作者： Yu-Hui Zhang Yue-Jiao Gong Jun Zhang Ying-biao Ling Ministry of Education Key Laboratory of Machine Intelligence and Advanced Computing Guangzhou Guangdong China School of Computer Science and Engineering South China University of Technology Guangzhou Guangdong China

ISBN: (纸本)9781509006243

Many-objective optimization has posed great challenges to existing evolutionary algorithms that are designed for solving two- or three-objective problems. Most of the algorithms do not scale well with the number of objectives due to the expansion of the objective space. In this paper, a hybrid evolutionary algorithm with dual populations (HEA-DP) is proposed to tackle many-objective problems. The algorithm combines the advantages of decomposition-based and indicator-based approaches by maintaining two populations. The fitness values of individuals in the first population are determined by an aggregation function, while individuals in the second population are evaluated according to an efficient performance indicator. The information about the objective space is shared by employing a reproduction strategy that chooses parents from both populations. In this way, the algorithm can explore the objective space more thoroughly and can have more stable performance. Several state-of-the-art many-objective algorithms are adopted as peer algorithms to validate the proposed algorithm. We test the algorithms on two commonly used many-objective problem suites using different numbers of objectives. Numerical results indicate that HEA-DP is highly competitive in most of the problem instances.

关键词： Sociology Algorithm design and analysis Evolutionary computation Approximation algorithms Pareto optimization

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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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Application of pattern spectra and convolutional neural networks to the analysis of simulated Cherenkov Telescope Array data

arXiv

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arXiv 2021年

作者： Aschersleben, Jann Peletier, R.F. Vecchi, M. Wilkinson, M.H.F. Abdalla, H. Abe, H. Abe, S. Abusleme, A. Acero, F. Acharyya, A. Portella, V. Acín Ackley, K. Adam, R. Adams, C. Adhikari, S.S. Aguado-Ruesga, I. Agudo, I. Aguilera, R. Aguirre-Santaella, A. Aharonian, F. Alberdi, A. Alfaro, R. Alfaro, J. Alispach, C. Aloisio, R. Batista, R. Alves Amans, J.-P. Amati, L. Amato, E. Ambrogi, L. Ambrosi, G. Ambrosio, M. Ammendola, R. Anderson, J. Anduze, M. Angüner, E.O. Antonelli, L.A. Antonuccio, V. Antoranz, P. Anutarawiramkul, R. Gutierrez, J. Aragunde Aramo, C. Araudo, A. Araya, M. Arbet-Engels, A. Arcaro, C. Arendt, V. Armand, C. Armstrong, T. Arqueros, F. Arrabito, L. Arsioli, B. Artero, M. Asano, K. Ascasíbar, Y. Ashley, M. Attinà, P. Aubert, P. Singh, C.B. Baack, D. Babic, A. Backes, M. Baena, V. Bajtlik, S. Baktash, A. Balazs, C. Balbo, M. Ballester, O. Ballet, J. Balmaverde, B. Bamba, A. Bandiera, R. Larriva, A. Baquero Barai, P. Barbier, C. Martins, V. Barbosa Barcelo, M. Barkov, M. Barnard, M. Baroncelli, L. de Almeida, U. Barres Barrio, J.A. Bastieri, D. Batista, P.I. Batkovic, I. Bauer, C. Bautista-González, R. Baxter, J. Becciani, U. González, J. Becerra Becherini, Y. Beck, G. Tjus, J. Becker Bednarek, W. Belfiore, A. Bellizzi, L. Belmont, R. Benbow, W. Berge, D. Bernardini, E. Bernardos, M.I. Bernlöhr, K. Berti, A. Berton, M. Bertucci, B. Beshley, V. Bhatt, N. Bhattacharyya, S. Bhattacharyya, W. Bhattacharyya, S. Bi, B. Bicknell, G. Biederbeck, N. Bigongiari, C. Biland, A. Bird, R. Bissaldi, E. Biteau, J. Bitossi, M. Blanch, O. Blank, M. Blazek, J. Bobin, J. Boccato, C. Bocchino, F. Boehm, C. Bohacova, M. Boisson, C. Boix, J. Bolle, J.-P. Bolmont, J. Bonanno, G. Bonavolontà, C. Arbeletche, L. Bonneau Bonnoli, G. Bordas, P. Borkowski, J. Bórquez, S. Bose, R. Bose, D. Bosnjak, Z. Bottacini, E. Böttcher, M. Botticella, M.T. Boutonnet, C. Bouyjou, F. Bozhilov, V. Bozzo, E. Brahimi, L. Braiding, C. Brau-Nogué, S. Breen, S. Kapteyn Astronomical Institute University of Groningen PO Box 800 Groningen9700 AV Netherlands Bernoulli Institute for Mathematics Computer Science and Artificial Intelligence University of Groningen PO Box 407 AK GroningenNL-9700 Netherlands Centre for Space Research North-West University Potchefstroom2520 South Africa Institute for Cosmic Ray Research University of Tokyo 5-1-5 Kashiwa-no-ha Chiba Kashiwa277-8582 Japan Pontificia Universidad Católica de Chile Av. Libertador Bernardo O'Higgins 340 Santiago Chile AIM CEA CNRS Université Paris-Saclay Université Paris Diderot Sorbonne Paris Cité CEA Paris-Saclay IRFU/DAp Bat 709 Orme des Merisiers Gif-sur-Yvette91191 France Centre for Advanced Instrumentation Dept. of Physics Durham University South Road DurhamDH1 3LE United Kingdom Port d'Informació Científica Edifici D Carrer de l'Albareda Cerdanyola del Vallès Bellaterrra08193 Spain School of Physics and Astronomy Monash University MelbourneVIC3800 Australia Palaiseau91128 France Department of Physics Columbia University 538 West 120th Street New YorkNY10027 United States University of Oslo Department of Physics Sem Saelandsvei 24 - PO Box 1048 Blindern OsloN-0316 Norway EMFTEL Department IPARCOS Universidad Complutense de Madrid Madrid28040 Spain Instituto de Astrofísica de Andalucía-CSIC Glorieta de la Astronomía s/n Granada18008 Spain Campus UAB Carrer de Can Magrans s/n Cerdanyola del Vallés08193 Spain Instituto de Física Teórica UAM/CSIC Departamento de Física Teórica Universidad Autónoma de Madrid Campus de Cantoblanco UAM c/ Nicolás Cabrera 13-15 Madrid28049 Spain Dublin Institute for Advanced Studies 31 Fitzwilliam Place Dublin 2 Ireland Universidad Nacional Autónoma de México Delegación Coyoacán Ciudad de México04510 Mexico University of Geneva Département de Physique Nucléaire et Corpusculaire 24 rue du Général-Dufour Genève 41211 Switzerland INFN Dipartimento di Scienze Fisiche e Chimiche Università

The Cherenkov Telescope Array (CTA) will be the next generation gamma-ray observatory and will be the major global instrument for very-high-energy astronomy over the next decade, offering 5 - 10 × better flux sensitivity than current generation gamma-ray telescopes. Each telescope will provide a snapshot of gamma-ray induced particle showers by capturing the induced Cherenkov emission at ground level. The simulation of such events provides images that can be used as training data for convolutional neural networks (CNNs) to determine the energy of the initial gamma rays. Compared to other state-of-the-art algorithms, analyses based on CNNs promise to further enhance the performance to be achieved by CTA. Pattern spectra are commonly used tools for image classification and provide the distributions of the shapes and sizes of various objects comprising an image. The use of relatively shallow CNNs on pattern spectra would automatically select relevant combinations of features within an image, taking advantage of the 2D nature of pattern spectra. In this work, we generate pattern spectra from simulated gamma-ray events instead of using the raw images themselves in order to train our CNN for energy reconstruction. This is different from other relevant learning and feature selection methods that have been tried in the past. Thereby, we aim to obtain a significantly faster and less computationally intensive algorithm, with minimal loss of performance. © 2021, CC BY.

关键词： Gamma rays

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A novel genetic algorithm for constructing uniform test forms of cognitive diagnostic models

A novel genetic algorithm for constructing uniform test form...

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Congress on Evolutionary Computation

作者： Ye-shi Jiang Ying Lin Jing-Jing Li Zheng-jia Dai Jun Zhang Xinglin Zhang Ministry of Education Key Laboratory of Machine Intelligence - & Sensor Networks P.R. China School of Data & Computer Science Sun Yat-sen University School of Computer Science South China Normal University Department of Psychology Sun Yat-sen University State Key Laboratory of Mathematical Engineering and Advanced Computing School of Comouter Science & Engineering South China University of Technology

Cognitive diagnostic models (CDMs) are a new class of test models developed for educational assessment. They have gained growing attention in recent years for their distinctive ability to provide detailed feedback about examinees' ability. Automatic test assembly (ATA), as in other test models, has been one of the most critical issues in the development and applications of CDMs. However, developing ATA methods for CDMs is especially challenging because no close-form expressions can measure the quality of a test form based on the items used. Although some heuristic methods have been proposed for building a single test form of CDMs, few ATA methods can construct uniform test forms of CDMs, in which each test form contains a different set of items but meets equivalent demand of test quality. In order to fill the gap, this paper proposes a novel genetic algorithm (GA) for constructing uniform test forms of CDMs. The effectiveness and efficiency of the proposed method is validated on a synthetic item pool under different conditions.

关键词： Genetic algorithms Error analysis Biological cells Computational modeling Sociology Statistics Computer science

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Deadline constrained cloud computing resources scheduling for cost optimization based on dynamic objective genetic algorithm

Deadline constrained cloud computing resources scheduling fo...

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IEEE Congress on Evolutionary Computation, CEC 2015

作者： Chen, Zong-Gan Du, Ke-Jing Zhan, Zhi-Hui Zhang, Jun Department of Computer Science Sun Yat-Sen University Guangzhou510275 China School of Advanced Computing Sun Yat-Sen University Guangzhou510275 China Key Laboratory of Machine Intelligence and Advanced Computing Ministry of Education China Engineering Research Center of Supercomputing Engineering Software Ministry of Education China Key Laboratory of Software Technology Department of Guangdong Province China

ISBN: (纸本)9781479974924

Cloud computing resources scheduling is significant for executing the workflows in cloud platform because it relates to both the execution time and execution cost. In order to take both the time and cost into consideration, Rodriguez and Buyya have proposed a cost-minimization and deadline-constrained workflow scheduling model on cloud computing. Their model has great applicability but the solution of their particle swarm optimization (PSO) approach is not good enough and cannot meet a tight deadline condition. In this paper, we propose a genetic algorithm (GA) approach to solve this model. In order to tackle with the tight deadline condition, a dynamic objective strategy is further proposed to let GA focus on optimize the execution time objective to meet the deadline constraint when the feasible solution hasn't been obtained. After obtaining a feasible solution, the GA focuses on optimizing the execution cost within the deadline constraint. Therefore, the proposed dynamic objective GA (DOGA) has adaptive ability to the search environment to different objectives. We have conduct extensive experiments based on workflows with different scales and different cloud resources. Experimental results show that DOGA can find better solution with smaller cost than PSO does on different scheduling scales and different deadline conditions. DOGA approach is more applicable to be used in commercial activities. © 2015 IEEE.

关键词： Genetic algorithms

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Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge

arXiv

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arXiv 2018年

作者： Bakas, Spyridon Reyes, Mauricio Jakab, Andras Bauer, Stefan Rempfler, Markus Crimi, Alessandro Shinohara, Russell Takeshi Berger, Christoph Ha, Sung Min Rozycki, Martin Prastawa, Marcel Alberts, Esther Lipkova, Jana Freymann, John Kirby, Justin Bilello, Michel Fathallah-Shaykh, Hassan M. Wiest, Roland Kirschke, Jan Wiestler, Benedikt Colen, Rivka Kotrotsou, Aikaterini Lamontagne, Pamela Marcus, Daniel Milchenko, Mikhail Nazeri, Arash Weber, Marc-Andr Mahajan, Abhishek Baid, Ujjwal Gerstner, Elizabeth Kwon, Dongjin Acharya, Gagan Agarwal, Manu Alam, Mahbubul Albiol, Alberto Albiol, Antonio Albiol, Francisco J. Alex, Varghese Allinson, Nigel Amorim, Pedro H.A. Amrutkar, Abhijit Anand, Ganesh Andermatt, Simon Arbel, Tal Arbelaez, Pablo Avery, Aaron Azmat, Muneeza Pranjal, B. Bai, Wenjia Banerjee, Subhashis Barth, Bill Batchelder, Thomas Batmanghelich, Kayhan Battistella, Enzo Beers, Andrew Belyaev, Mikhail Bendszus, Martin Benson, Eze Bernal, Jose Bharath, Halandur Nagaraja Biros, George Bisdas, Sotirios Brown, James Cabezas, Mariano Cao, Shilei Cardoso, Jorge M. Carver, Eric N. Casamitjana, Adri Castillo, Laura Silvana Cat, Marcel Cattin, Philippe Cérigues, Albert Chagas, Vinicius S. Chandra, Siddhartha Chang, Yi-Ju Chang, Shiyu Chang, Ken Chazalon, Joseph Chen, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Cheng, Kun Choudhury, Ahana Roy Chylla, Roger Clrigues, Albert Colleman, Steven Colmeiro, Ramiro German Rodriguez Combalia, Marc Costa, Anthony Cui, Xiaomeng Dai, Zhenzhen Dai, Lutao Daza, Laura Alexandra Deutsch, Eric Ding, Changxing Dong, Chao Dong, Shidu Dudzik, Wojciech Eaton-Rosen, Zach Egan, Gary Escudero, Guilherme Estienne, Tho Everson, Richard Fabrizio, Jonathan Fan, Yong Fang, Longwei Feng, Xue Ferrante, Enzo Fidon, Lucas Fischer, Martin French, Andrew P. Fridman, Naomi Fu, Huan Fuentes, David Gao, Yaozong Gates, Evan Gering, David Gholami, Amir Gierke, Willi Glocker, Ben Gong, Mingming Gonzlez-Vill, Sandra Grosges, T. Guan, Yuanfang Guo, Sheng Gupta, Sudeep Han, Woo-Sup Han, Il Song Harmuth, Ko Center for Biomedical Image Computing and Analytics University of Pennsylvania PhiladelphiaPA United States Department of Radiology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Institute for Surgical Technology and Biomechanics University of Bern Bern Switzerland Center for MR-Research University Children's Hospital Zurich Zurich Switzerland Support Centre for Advanced Neuroimaging Inselspital Institute for Diagnostic and Interventional Neuroradiology Bern University Hospital Bern Switzerland University Hospital of Zurich Zurich Switzerland Center for Clinical Epidemiology and Biostatistics University of Pennsylvania Philadelphia United States Image-Based Biomedical Modeling Group Technical University of Munich Munich Germany Icahn School of Medicine Mount Sinai Health System New YorkNY United States Leidos Biomedical Research Inc. Frederick National Laboratory for Cancer Research FrederickMD21701 United States Cancer Imaging Program National Cancer Institute National Institutes of Health BethesdaMD20814 United States Department of Neurology University of Alabama at Birmingham BirminghamAL United States Department of Diagnostic Radiology University of Texas MD Anderson Cancer Center HoustonTX United States Department of Psychology Washington University St. LouisMO United States Neuroimaging Informatics and Analysis Center Washington University St. LouisMO United States Department of Radiology Washington University St. LouisMO United States Institute of Diagnostic and Interventional Radiology Pediatric Radiology and Neuroradiology University Medical Center Rostock Ernst-Heydemann-Str. 6 Rostock18057 Germany Tata Memorial Centre Homi Bhabha National Institute Mumbai India Shri Guru Gobind Singhji Institute of Engineering and Technology Nanded India NVIDIA Santa Clara

Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset. Copyright © 2018, The Authors. All rights reserved.

关键词： Tumors

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