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arXiv 2023年

作者： Peletier, R.F. Abdalla, H. Abe, H. Abe, S. Abusleme, A. Acero, F. Acharyya, A. Acín Portella, V. Ackley, K. Adam, R. Adams, C. Adhikari, S.S. Aguado-Ruesga, I. Agudo, I. Aguilera, R. Aguirre-Santaella, A. Aharonian, F. Alberdi, A. Alfaro, R. Alfaro, J. Alispach, C. Aloisio, R. Alves Batista, R. Amans, J.-P. Amati, L. Amato, E. Ambrogi, L. Ambrosi, G. Ambrosio, M. Ammendola, R. Anderson, J. Anduze, M. Angüner, E.O. Antonelli, L.A. Antonuccio, V. Antoranz, P. Anutarawiramkul, R. Aragunde Gutierrez, J. Aramo, C. Araudo, A. Araya, M. Arbet-Engels, A. Arcaro, C. Arendt, V. Armand, C. Armstrong, T. Arqueros, F. Arrabito, L. Arsioli, B. Artero, M. Asano, K. Ascasíbar, Y. Aschersleben, J. Ashley, M. Attinà, P. Aubert, P. Singh, C.B. Baack, D. Babic, A. Backes, M. Baena, V. Bajtlik, S. Baktash, A. Balazs, C. Balbo, M. Ballester, O. Ballet, J. Balmaverde, B. Bamba, A. Bandiera, R. Baquero Larriva, A. Barai, P. Barbier, C. Barbosa Martins, V. Barcelo, M. Barkov, M. Barnard, M. Baroncelli, L. Barres de Almeida, U. Barrio, J.A. Bastieri, D. Batista, P.I. Batkovic, I. Bauer, C. Bautista-González, R. Baxter, J. Becciani, U. Becerra González, J. Becherini, Y. Beck, G. Becker Tjus, J. Bednarek, W. Belfiore, A. Bellizzi, L. Belmont, R. Benbow, W. Berge, D. Bernardini, E. Bernardos, M.I. Bernlöhr, K. Berti, A. Berton, M. Bertucci, B. Beshley, V. Bhatt, N. Bhattacharyya, S. Bhattacharyya, W. Bhattacharyya, S. Bi, B. Bicknell, G. Biederbeck, N. Bigongiari, C. Biland, A. Bird, R. Bissaldi, E. Biteau, J. Bitossi, M. Blanch, O. Blank, M. Blazek, J. Bobin, J. Boccato, C. Bocchino, F. Boehm, C. Bohacova, M. Boisson, C. Boix, J. Bolle, J.-P. Bolmont, J. Bonanno, G. Bonavolontà, C. Bonneau Arbeletche, L. Bonnoli, G. Bordas, P. Borkowski, J. Bórquez, S. Bose, R. Bose, D. Bosnjak, Z. Bottacini, E. Böttcher, M. Botticella, M.T. Boutonnet, C. Bouyjou, F. Bozhilov, V. Bozzo, E. Brahimi, L. Braiding, C. Brau-Nogué, S. Breen, S. Bregeon, J. Breuhaus, M. Bernoulli Institute for Mathematics Computer Science and Artificial Intelligence University of Groningen PO Box 407 GroningenNL-9700 AK Netherlands Centre for Space Research North-West University Potchefstroom2520 South Africa Institute for Cosmic Ray Research University of Tokyo 5-1-5 Kashiwa-no-ha Chiba Kashiwa277-8582 Japan Pontificia Universidad Católica de Chile Av. Libertador Bernardo O'Higgins 340 Santiago Chile AIM CEA CNRS Université Paris-Saclay Université Paris Diderot Sorbonne Paris Cité CEA Paris-Saclay IRFU/DAp Bat 709 Orme des Merisiers Gif-sur-Yvette91191 France Centre for Advanced Instrumentation Dept. of Physics Durham University South Road DurhamDH1 3LE United Kingdom Port d'Informació Científica Edifici D Carrer de l'Albareda Bellaterrra Cerdanyola del Vallès08193 Spain School of Physics and Astronomy Monash University MelbourneVIC3800 Australia Laboratoire Leprince-Ringuet École Polytechnique UMR 7638 CNRS IN2P3 Institut Polytechnique de Paris Palaiseau91128 France Department of Physics Columbia University 538 West 120th Street New YorkNY10027 United States University of Oslo Department of Physics Sem Saelandsvei 24 - PO Box 1048 Blindern OsloN-0316 Norway EMFTEL department IPARCOS Universidad Complutense de Madrid Madrid28040 Spain Instituto de Astrofísica de Andalucía-CSIC Glorieta de la Astronomía s/n Granada18008 Spain Campus UAB Carrer de Can Magrans s/n Cerdanyola del Vallés08193 Spain Instituto de Física Teórica UAM/CSIC Departamento de Física Teórica Universidad Autónoma de Madrid Campus de Cantoblanco UAM c/Nicolás Cabrera 13-15 Madrid28049 Spain Dublin Institute for Advanced Studies 31 Fitzwilliam Place Dublin 2 Ireland Universidad Nacional Autónoma de México Delegación Coyoacán Ciudad de México04510 Mexico University of Geneva Département de Physique Nucléaire et Corpusculaire 24 rue du Général-Dufour Genève 41211 Switzerland INFN Dipartimento di Scienze Fisiche e Chimiche Univer

The Cherenkov Telescope Array (CTA) is the future observatory for ground-based imaging atmospheric Cherenkov telescopes. Each telescope will provide a snapshot of gamma-ray induced particle showers by capturing the induced Cherenkov emission at ground level. The simulation of such events provides camera images that can be used as training data for convolutional neural networks (CNNs) to differentiate signals from background events and to determine the energy of the initial gamma-ray events. Pattern spectra are commonly used tools for image classification and provide the distributions of the sizes and shapes of features comprising an image. The application of pattern spectra on a CNN allows the selection of relevant combinations of features within an image. In this work, we generate pattern spectra from simulated gamma-ray images to train a CNN for signal-background separation and energy reconstruction for CTA. We compare our results to a CNN trained with CTA images and find that the pattern spectra-based analysis is computationally less expensive but not competitive with the purely CTA images-based analysis. Thus, we conclude that the CNN must rely on additional features in the CTA images not captured by the pattern spectra. © 2023, CC BY.

关键词： Gamma rays

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Author Correction: Federated learning enables big data for rare cancer boundary detection

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Nature communications 2023年第1期14卷 436页

作者： Sarthak Pati Ujjwal Baid Brandon Edwards Micah Sheller Shih-Han Wang G Anthony Reina Patrick Foley Alexey Gruzdev Deepthi Karkada Christos Davatzikos Chiharu Sako Satyam Ghodasara Michel Bilello Suyash Mohan Philipp Vollmuth Gianluca Brugnara Chandrakanth J Preetha Felix Sahm Klaus Maier-Hein Maximilian Zenk Martin Bendszus Wolfgang Wick Evan Calabrese Jeffrey Rudie Javier Villanueva-Meyer Soonmee Cha Madhura Ingalhalikar Manali Jadhav Umang Pandey Jitender Saini John Garrett Matthew Larson Robert Jeraj Stuart Currie Russell Frood Kavi Fatania Raymond Y Huang Ken Chang Carmen Balaña Jaume Capellades Josep Puig Johannes Trenkler Josef Pichler Georg Necker Andreas Haunschmidt Stephan Meckel Gaurav Shukla Spencer Liem Gregory S Alexander Joseph Lombardo Joshua D Palmer Adam E Flanders Adam P Dicker Haris I Sair Craig K Jones Archana Venkataraman Meirui Jiang Tiffany Y So Cheng Chen Pheng Ann Heng Qi Dou Michal Kozubek Filip Lux Jan Michálek Petr Matula Miloš Keřkovský Tereza Kopřivová Marek Dostál Václav Vybíhal Michael A Vogelbaum J Ross Mitchell Joaquim Farinhas Joseph A Maldjian Chandan Ganesh Bangalore Yogananda Marco C Pinho Divya Reddy James Holcomb Benjamin C Wagner Benjamin M Ellingson Timothy F Cloughesy Catalina Raymond Talia Oughourlian Akifumi Hagiwara Chencai Wang Minh-Son To Sargam Bhardwaj Chee Chong Marc Agzarian Alexandre Xavier Falcão Samuel B Martins Bernardo C A Teixeira Flávia Sprenger David Menotti Diego R Lucio Pamela LaMontagne Daniel Marcus Benedikt Wiestler Florian Kofler Ivan Ezhov Marie Metz Rajan Jain Matthew Lee Yvonne W Lui Richard McKinley Johannes Slotboom Piotr Radojewski Raphael Meier Roland Wiest Derrick Murcia Eric Fu Rourke Haas John Thompson David Ryan Ormond Chaitra Badve Andrew E Sloan Vachan Vadmal Kristin Waite Rivka R Colen Linmin Pei Murat Ak Ashok Srinivasan J Rajiv Bapuraj Arvind Rao Nicholas Wang Ota Yoshiaki Toshio Moritani Sevcan Turk Joonsang Lee Snehal Prabhudesai Fanny Morón Jacob Mandel Konstantinos Kamnitsas Ben Glocker Luke V M Dixon Matthew Williams Peter Zamp Center for Biomedical Image Computing and Analytics (CBICA) University of Pennsylvania Philadelphia PA USA. Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA. Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA. Department of Informatics Technical University of Munich Munich Bavaria Germany. Intel Corporation Santa Clara CA USA. Department of Neuroradiology Heidelberg University Hospital Heidelberg Germany. Clinical Cooperation Unit Neuropathology German Cancer Consortium (DKTK) within the German Cancer Research Center (DKFZ) Heidelberg Germany. Department of Neuropathology Heidelberg University Hospital Heidelberg Germany. Division of Medical Image Computing German Cancer Research Center Heidelberg Germany. Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Heidelberg Germany. Neurology Clinic Heidelberg University Hospital Heidelberg Germany. Department of Radiology & Biomedical Imaging University of California San Francisco San Francisco CA USA. Symbiosis Center for Medical Image Analysis Symbiosis International University Pune Maharashtra India. Department of Neuroimaging and Interventional Radiology National Institute of Mental Health and Neurosciences Bangalore Karnataka India. Department of Radiology School of Medicine and Public Health University of Wisconsin Madison WI USA. Department of Medical Physics School of Medicine and Public Health University of Wisconsin Madison WI USA. Leeds Teaching Hospitals Trust Department of Radiology Leeds UK. Department of Radiology Brigham and Women's Hospital Harvard Medical School Boston MA USA. Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Charlestown MA USA. Catalan Institute of Oncology Badalona Spain. Consorci MAR Parc de Salut de Barcelona Catalonia Spain. Department of Radiology (IDI

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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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