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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Guo, Kuo Li, Yifan Chen, Hao Shen, Hong-Bin Yang, Yang Shanghai Jiao Tong University Key Lab. of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Department of Computer Science and Engineering Shanghai200240 China Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Institute of Image Processing and Pattern Recognition Shanghai200240 China Carnegie Mellon University School of Computer Science Computational Biology Department PittsburghPA15213 United States

ISBN: (纸本)9798350337488

Isoforms refer to different mRNA molecules transcribed from the same gene, which can be translated into proteins with varying structures and functions. Predicting the functions of isoforms is an essential topic in bioinformatics as it can provide valuable insights into the intricate mechanisms of gene regulation and biological processes. Conventionally, gene function labels are standardized in Gene Ontology (GO) terms. However, traditional methods for predicting isoform function are largely limited by the absence of isoform-specific labels, sparse annotations, and the vast number of GO terms. To address these issues, we propose HANIso, a deep learning-based method for isoform function prediction. HANIso leverages a pretrained protein language model to extract features from protein sequences. It also integrates heterogeneous information, such as isoform sequence features, GO annotations, and isoform interaction data, using a Heterogeneous Graph Attention Network (HAN). This allows the model to learn the importance of different sources of information and their semantic relationships through the attention mechanism. Our method can predict function labels at both the gene level and isoform level. We conduct experiments on two species datasets, and the results demonstrate that our method outperforms existing methods on both AUROC and AUPRC. HANIso has the potential to overcome the limitations of traditional methods and provide a more accurate and comprehensive understanding of isoform function. © 2023 IEEE.

关键词： alternative splicing gene ontology heterogeneous graph attention network isoform function prediction protein language model

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MPIB: An MPI-Based Bokeh Rendering Framework for Realistic Partial Occlusion Effects

arXiv

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arXiv 2022年

作者： Peng, Juewen Zhang, Jianming Luo, Xianrui Lu, Hao Xian, Ke Cao, Zhiguo Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of AIA Huazhong University of Science and Technology China Adobe Research

Partial occlusion effects are a phenomenon that blurry objects near a camera are semi-transparent, resulting in partial appearance of occluded background. However, it is challenging for existing bokeh rendering methods to simulate realistic partial occlusion effects due to the missing information of the occluded area in an all-in-focus image. Inspired by the learnable 3D scene representation, Multiplane image (MPI), we attempt to address the partial occlusion by introducing a novel MPI-based high-resolution bokeh rendering framework, termed MPIB. To this end, we first present an analysis on how to apply the MPI representation to bokeh rendering. Based on this analysis, we propose an MPI representation module combined with a background inpainting module to implement high-resolution scene representation. This representation can then be reused to render various bokeh effects according to the controlling parameters. To train and test our model, we also design a ray-tracing-based bokeh generator for data generation. Extensive experiments on synthesized and real-world images validate the effectiveness and flexibility of this framework. Copyright © 2022, The Authors. All rights reserved.

关键词： Rendering (computer graphics)

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A Novel Brain-Inspired Hierarchical Perception-Association Circuit Based on Memristor Arrays

SSRN

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SSRN 2023年

作者： Chen, Liangyu Wang, Xiaoping Chen, Zhanfei Yang, Chao Zeng, Zhigang School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China Key Laboratory of Image Processing and Intelligent Control Education Ministry of China Wuhan430074 China Hubei Key Laboratory of Brain-inspired Intelligent Systems Wuhan430074 China

In the brain, primary sensory cells can efficiently perceive multimodal stimuli, and then associative memory cells perform an advanced bidirectional associative memory function with perceived information. Here, a brain-inspired hierarchical perception-association circuit based on memristor arrays is proposed. Firstly, a memristive reservoir computing circuit is designed to simulate a low-level perceptual function, which mainly comprises dynamic analog reservoirs, memristor arrays, and analog integrators, enabling efficient spatio-temporal information processing. Secondly, a spiking bidirectional associative memory memristive circuit, as the core of the whole circuit, is proposed to mimick a high-level associative function, which mainly consists of memristor arrays, current amplifiers, and leaky integrate-and-fire neuron circuits, implementing multimodal associative learning. The simulation results in LTspice show that the modified neuron circuit exhibits 66× improvement in energy efficiency, and the proposed circuit can precisely perform the letter association and vision-audio association tasks in a spiking fashion with an average firing energy consumption of 230 pJ/spike, which has a great potential to be embedded in mobile robotic platforms. © 2023, The Authors. All rights reserved.

关键词： Memristors

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Statistical Feasibility Robust Optimization for Hydrogen-Data Center Microgrid Operation

SSRN

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SSRN 2024年

作者： Duan, Juntao Li, Yuanzheng Li, Yang Liu, Zhiwei Zhao, Yong School of Artificial Intelligence and Automation Key Laboratory on Image Information Processing and Intelligent Control of Ministry of Education Huazhong University of Science and Technology Wuhan430074 China Key Laboratory of Modern Power System Simulation and Control & Renewable Energy Technology Ministry of Education Northeast Electric Power University Jilin132012 China

The increasing processing demands of information technology (IT) workloads cause the booming of data centers (DCs) in recent years. The servers in the DC emit much heat when processing the IT workloads and thus the DC temperature rises. The power consumption when controlling the DC temperature using the air conditioning (A/C) of the DC is high, which leads to expensive power bills. To reduce the power cost, using renewable energy (RE) to power DC has raised much attention in recent years. However, the intermittency of RE and the uncertainties of outside temperature pose operational challenges. Therefore, in this paper, a data-driven statistical-feasibility-based robust rolling optimization framework for the operation of hydrogen-DC microgrid (H2-DCMG) is proposed to control the DC temperature considering these uncertainties and the intermittency of RE. In the framework, the hydrogen energy storage system (HESS) is introduced to deal with the intermittency of RE, and robust optimization (RO) is adopted to deal with the uncertainty of outside temperature. The statistical feasibility is introduced into the framework to decrease the conservatism of RO, through relaxing the DC temperature constraints without harming normal DC operations. Moreover, we propose the Statistical-Guarantee-based Vertex Link (SGVL) algorithm to construct a polyhedron uncertain set of outside temperatures that can ensure the results of dispatch are economical and satisfy statistical feasibility. The constructed polyhedron uncertain set is linear, which reduces computational complexity in solving. A case study based on the real-world temperature dataset verifies the superiority of the SGVL algorithm on the aspect of the economic cost. It further validates the effectiveness of the proposed robust optimization framework for DC temperature control. © 2024, The Authors. All rights reserved.

关键词： Air conditioning

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Statistical Feasibility Robust Optimization for Hydrogen-Data Center Microgrid Operation

SSRN

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SSRN 2024年

关键词： Air conditioning

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3D Cinemagraphy from a Single image

arXiv

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arXiv 2023年

作者： Li, Xingyi Cao, Zhiguo Sun, Huiqiang Zhang, Jianming Xian, Ke Lin, Guosheng Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Huazhong University of Science and Technology China Adobe Research S-Lab Nanyang Technological University Singapore

We present 3D Cinemagraphy, a new technique that marries 2D image animation with 3D photography. Given a single still image as input, our goal is to generate a video that contains both visual content animation and camera motion. We empirically find that naively combining existing 2D image animation and 3D photography methods leads to obvious artifacts or inconsistent animation. Our key insight is that representing and animating the scene in 3D space offers a natural solution to this task. To this end, we first convert the input image into feature-based layered depth images using predicted depth values, followed by unprojecting them to a feature point cloud. To animate the scene, we perform motion estimation and lift the 2D motion into the 3D scene flow. Finally, to resolve the problem of hole emergence as points move forward, we propose to bidirectionally displace the point cloud as per the scene flow and synthesize novel views by separately projecting them into target image planes and blending the results. Extensive experiments demonstrate the effectiveness of our method. A user study is also conducted to validate the compelling rendering results of our method. Copyright © 2023, The Authors. All rights reserved.

关键词： Animation

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Multi-scale convolutional neural networks for brain disease diagnosis

Multi-scale convolutional neural networks for brain disease ...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Zhongyi Hu Libin Gao Yinsheng Tong Xingjin Lu Rui Li Lei Xiao Zuoyong Li College of Computer Science and Aritificial Intelligence Wenzhou University Wenzhou China Key Laboratory of Intelligent Image Processing and Analysis Wenzhou China College of Computer and Control Engineering Minjiang University Fuzhou China

The brain is the most sophisticated and complex organ in the human body. Nowadays, diagnosing complex and diverse brain diseases is a hot topic. Alzheimer's Disease (AD), Autism Spectrum Disorder (ASD), and others are common brain diseases. With the increased usage of Artificial Intelligence (AI) in medical image analysis, the endeavor to make AI comprehend brain images for assisting doctors in making objective diagnoses of brain diseases has gained considerable attention. Resting-state functional magnetic resonance imaging (rs-fMRI) is a widely used tool for diagnosing and analyzing brain ***, the Pearson correlation coefficient (PCC) method constructs a dynamic functional connectivity (dFC) network using a fixed window size. However, this method has limitations as it is challenging to extract potential high-level features from the dFC and determine local feature relevance. This paper presents a method for constructing dFC based on multi-scale sliding windows and proposes Multi-scale Convolutional Neural Networks (MsCNN) for learning and analyzing dFC at various scales. Finally, a deep fusion of features learned at different scales is employed for the diagnostic classification of brain *** to the rs-fMRI dataset from ADNI, the classification accuracy was 84.0% for eMCI/lMCI, 84.4% for lMCI/AD, and 58.4% for NC/eMCI/lMCI/AD. Applied to rs-fMRI data from ABIDE, the accuracy was 74.7% for ASD/NC. The proposed method exhibits robust classification performance and introduces a new approach to diagnosing other brain diseases.

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Constraining Depth Map Geometry for Multi-View Stereo: A Dual-Depth Approach with Saddle-shaped Depth Cells

Constraining Depth Map Geometry for Multi-View Stereo: A Dua...

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International Conference on Computer Vision (ICCV)

作者： Xinyi Ye Weiyue Zhao Tianqi Liu Zihao Huang Zhiguo Cao Xin Li Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China Department of Computer Science University of Albany Albany NY

Learning-based multi-view stereo (MVS) methods deal with predicting accurate depth maps to achieve an accurate and complete 3D representation. Despite the excellent performance, existing methods ignore the fact that a suitable depth geometry is also critical in MVS. In this paper, we demonstrate that different depth geometries have significant performance gaps, even using the same depth prediction error. Therefore, we introduce an ideal depth geometry composed of Saddle-Shaped Cells, whose predicted depth map oscillates upward and downward around the ground-truth surface, rather than maintaining a continuous and smooth depth plane. To achieve it, we develop a coarse-to-fine framework called Dual-MVSNet (DMVSNet), which can produce an oscillating depth plane. Technically, we predict two depth values for each pixel (Dual-Depth), and propose a novel loss function and a checkerboard-shaped selecting strategy to constrain the predicted depth geometry. Compared to existing methods, DMVSNet achieves a high rank on the DTU benchmark and obtains the top performance on challenging scenes of Tanks and Temples, demonstrating its strong performance and generalization ability. Our method also points to a new research direction for considering depth geometry in MVS.

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Fast Full-frame Video Stabilization with Iterative Optimization

Fast Full-frame Video Stabilization with Iterative Optimizat...

引用

International Conference on Computer Vision (ICCV)

作者： Weiyue Zhao Xin Li Zhan Peng Xianrui Luo Xinyi Ye Hao Lu Zhiguo Cao Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China Department of Computer Science University of Albany Albany NY

Video stabilization refers to the problem of transforming a shaky video into a visually pleasing one. The question of how to strike a good trade-off between visual quality and computational speed has remained one of the open challenges in video stabilization. Inspired by the analogy between wobbly frames and jigsaw puzzles, we propose an iterative optimization-based learning approach using synthetic datasets for video stabilization, which consists of two interacting submodules: motion trajectory smoothing and full-frame outpainting. First, we develop a two-level (coarse-to-fine) stabilizing algorithm based on the probabilistic flow field. The confidence map associated with the estimated optical flow is exploited to guide the search for shared regions through backpropagation. Second, we take a divide-and-conquer approach and propose a novel multi-frame fusion strategy to render full-frame stabilized views. An important new insight brought about by our iterative optimization approach is that the target video can be interpreted as the fixed point of nonlinear mapping for video stabilization. We formulate video stabilization as a problem of minimizing the amount of jerkiness in motion trajectories, which guarantees convergence with the help of fixed-point theory. Extensive experimental results are reported to demonstrate the superiority of the proposed approach in terms of computational speed and visual quality. The code will be available on GitHub.

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Real-Time Maritime Obstacle Detection Based on YOLOv5 for Autonomous Berthing 16th

Real-Time Maritime Obstacle Detection Based on YOLOv5 for Au...

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16th International Conference on Bio-Inspired Computing: Theories and Applications, BIC-TA 2021

作者： Chen, Guotong Qi, Jiangtao Dai, Zeyu Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China China Ship Scientific Research Center No. 222 Shanshui East Road Binhu District Wuxi214082 China

ISBN: (纸本)9789811912528

The shipping industry is developing towards intelligence, in which autonomous berthing and docking systems play an important role. Real-time maritime obstacle detection is essential for autonomous berthing, which can protect ships from collisions. In the field of real-time objection detection, YOLOv5s is one of the most effective networks. To solve the real-time maritime obstacle detection for autonomous berthing, we propose an improved network, named YOLOv5s-CBAM, which employs the convolutional block attention module to boost the representation power of YOLOv5s. In addition, we propose another network, named YOLOv5-SE, in which a squeeze-and-excitation block is introduced to recalibrate the channel-wise features adaptively. The experimental results demonstrate that YOLOv5s-CBAM outperforms YOLOv5s in the detection of large obstacles. Both YOLOv5s-CBAM and YOLOv5s-SE achieve state-of-the-art performance in various metrics compared with previous related work for maritime obstacle detection. © 2022, Springer Nature Singapore Pte Ltd.

关键词： Ships

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