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Self-Supervised Plant Phenotyping by Combining Domain Adaptation with 3D Plant Model Simulations: Application to Wheat Leaf Counting at Seedling Stage

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Plant Phenomics 2023年第2期5卷 226-238页

作者： Yinglun Li Xiaohai Zhan Shouyang Liu Hao Lu Ruibo Jiang Wei Guo Scott Chapman Yufeng Ge Benoit de Solan Yanfeng Ding Frédéric Baret Plant Phenomics Research Centre Academy for Advanced Interdisciplinary StudiesJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjingChina Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and AutomationHuazhong University of Science and TechnologyWuhanChina Graduate School of Agricultural and Life Sciences The University of Tokyo1-1-1 Midori-choNishitokyo CityTokyoJapan School of Agriculture and Food Sciences The University of QueenslandSt.LuciaQueensland 4072Australia Department of Biological Systems Engineering University of Nebraska-LincolnLincolnNebraska 68583United States INRAE Avignon UniversitéUMR EMMAHUMT CAPTE228route de l’aérodrome-CS 4050984914 Avignon Cedex 9France ARVALIS Institut du Végétal 3 Rue Joseph et Marie Hackin75116 ParisFrance

The number of leaves at a given time is important to characterize plant growth and *** this work,we developed a high-throughput method to count the number of leaves by detecting leaf tips in RGB *** digital plant phenotyping platform was used to simulate a large and diverse dataset of RGB images and corresponding leaf tip labels of wheat plants at seedling stages(150,000 images with over 2 million labels).The realism of the images was then improved using domain adaptation methods before training deep learning *** results demonstrate the efficiency of the proposed method evaluated on a diverse test dataset,collecting measurements from 5 countries obtained under different environments,growth stages,and lighting conditions with different cameras(450 images with over 2,162 labels).Among the 6 combinations of deep learning models and domain adaptation techniques,the Faster-RCNN model with cycle-consistent generative adversarial network adaptation technique provided the best performance(R^(2)=0.94,root mean square error=8.7).Complementary studies show that it is essential to simulate images with sufficient realism(background,leaf texture,and lighting conditions)before applying domain adaptation ***,the spatial resolution should be better than 0.6 mm per pixel to identify leaf *** method is claimed to be self-supervised since no manual labeling is required for model *** self-supervised phenotyping approach developed here offers great potential for addressing a wide range of plant phenotyping *** trained networks are available at https://***/YinglunLi/Wheat-leaf-tip-detection.

关键词： Wheat seedling Plant

Byzantine-Resilient Multi-Agent Distributed Exact Optimization with Less Data

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arXiv 2023年

作者： Zhai, Yang Liu, Zhi-Wei Yue, Dong Hu, Songlin Xie, Xiangpeng The Institute of Advanced Technology for Carbon Neutrality Nanjing University of Posts and Telecommunications Nanjing210023 China The School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China The Key Laboratory of Image Processing and Intelligent Control Ministry of Education Huazhong University of Science and Technology Wuhan430074 China

This paper studies the distributed multi-agent resilient optimization problem under the f-total Byzantine attacks. Compared with the previous work on Byzantine-resilient multi-agent exact optimization problems, we do not require the communication topology to be fully connected. Under the redundancy of cost functions, we propose the distributed comparative gradient elimination resilient optimization algorithm based on the traditional assumptions on strongly convex global costs and Lipschitz continuous gradients. Under this algorithm, we successfully prove that if the number of in-neighbors of each normal agent is greater than some constant and the parameter f satisfies certain conditions, all normal agents' local estimations of the global variable will finally reach consensus and converge to the optimized solution. Finally, the numerical experiments successfully verify the correctness of the results. Copyright © 2023, The Authors. All rights reserved.

关键词： Multi agent systems

Selection of Cancer Biomarkers from Microarray Gene Expression Data Utilizing the Bi-Objective Optimization Method

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Selection of Cancer Biomarkers from Microarray Gene Expressi...

IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Hanjing Jiang Jianqing Lin Huachao Zhu Yabing Huang Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China Institute of Artificial Intelligence School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China School of Computer Science Wuhan University Wuhan China Department of Pathology Renmin Hospital of Wuhan University Wuhan China

Cancer-associated biomarker genes play an indispensable role in the intricate tapestry of cancer development and manifestation. The expression of biomarkers in different types of tumor cells has beneficial implications for shedding light on the development of various cancers, guiding clinical diagnosis, and treatment. Microarray technology enables the expression levels of thousands of genes in samples to be sequenced simultaneously. However, sparse and high-dimensional microarray data present a formidable challenge in identifying biomarker genes. This study presents EREF-NSGA2, a novel method for cancer biomarker selection from microarray data, employing a hybrid gene selection approach. Firstly, the combination of the wrapper and embedded gene selection methods is proposed to filter the microarray data, which efficiently decreases the search space of the algorithm. After that, the improved NSGA-II algorithm is used to search the genes subset obtained from the previous step to reach the optimal subset of cancer biomarker genes. The proposed EREF-NSGA2 is compared with other reported methods on six cancer benchmark gene expression datasets. A detailed biological analysis is performed to analyze the relationship between the selected genes and the cancer data sets they belong to. To summarize, EREF-NSGA2 proves its effectiveness in selecting a feature subset comprising the fewest genes while maintaining the highest classification accuracy.

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Down-Level control Based on Level Prediction of Landslide Evolutionary State 11

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Down-Level Control Based on Level Prediction of Landslide Ev...

11th International Conference on Information Science and Technology, ICIST 2021

作者： Sun, Shu Lian, Cheng Wang, Xiaoping Huazhong University of Science and Technology School of Artificial Intelligence and Automation Wuhan China Wuhan University of Technology School of Automation Wuhan China Huazhong University of Science and Technology Sch. of Artif. Intell. and Automation Key Laboratory of Image Processing and Intelligent Control Wuhan China

ISBN: (纸本)9781665412667

Accurate prediction and effective control are the key to reducing the impact of landslide disasters. In practice, most of recent studies focus on landslide displacement prediction and control. In this paper, we propose a new control method based on the level prediction of landslide evolution state, namely down-level control. The core components are level predictor and interval predictor in this method. Specially, we first transform the traditional displacement regression prediction problem into a level classification prediction problem by labeling discrete category information for landslide sample points. Then the level predictor based on Multi-task learning-Stacked long-short time memory network (MTL-SLSTM) is established to predict the state of the landslide and judge whether the system needs to be controlled. Finally, we design a safe rainfall interval predictor based on bootstrap method to obtain the safe value of control variation. The effectiveness of the proposed control method is verified on Baishuihe and Shiliushubao landslides. The results show the proposed down-level control method is valid and more intuitive. © 2021 IEEE.

关键词： Level control

Coordinated Guiding Vector Field Design for Ordering-Flexible Multi-Robot Surface Navigation

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arXiv 2024年

作者： Hu, Bin-Bin Zhang, Hai-Tao Yao, Weijia Sun, Zhiyong Cao, Ming The School of Artificial Intelligence and Automation The Engineering Research Center of Autonomous Intelligent Unmanned Systems The Key Laboratory of Image Processing and Intelligent Control The State Key Lab of Digital Manufacturing Equipment and Technology Huazhong University of Science and Technology Wuhan430074 China The School of Robotics Hunan University Hunan410082 China The Institute of Engineering and Technology University of Groningen Groningen9747 AG Netherlands Department of Electrical Engineering Eindhoven University of Technology Netherlands

We design a distributed coordinated guiding vector field (CGVF) for a group of robots to achieve ordering-flexible motion coordination while maneuvering on a desired two-dimensional (2D) surface. The CGVF is characterized by three terms, i.e., a convergence term to drive the robots to converge to the desired surface, a propagation term to provide a traversing direction for maneuvering on the desired surface, and a coordinated term to achieve the surface motion coordination with an arbitrary ordering of the robotic group. By setting the surface parameters as additional virtual coordinates, the proposed approach eliminates potential singularity of the CGVF and enables both the global convergence to the desired surface and the maneuvering on the surface from all possible initial conditions. The ordering-flexible surface motion coordination is realized by each robot to share with its neighbors only two virtual coordinates, i.e. that of a given target and that of its own, which reduces the communication and computation cost in multi-robot surface navigation. Finally, the effectiveness of the CGVF is substantiated by extensive numerical simulations. Copyright © 2024, The Authors. All rights reserved.

关键词： Navigation

SliceProp: A Slice-Wise Bidirectional Propagation Model for Interactive 3D Medical image Segmentation

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SliceProp: A Slice-Wise Bidirectional Propagation Model for ...

Medical Artificial Intelligence (MedAI), IEEE International Conference on

作者： Xin Xu Wenjing Lu Jiahao Lei Peng Qiu Hong-Bin Shen Yang Yang Department of Computer Science and Engineering Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai Jiao Tong University Shanghai China Department of Vascular Surgery Shanghai Ninth People's Hospital Shanghai Jiao Tong University School of Medicine Institute of Image Processing and Pattern Recognition and Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai Jiao Tong University Shanghai China

Interactive medical image segmentation methods have become increasingly popular in recent years. These methods combine manual labeling and automatic segmentation, reducing the workload of annotation while maintaining high accuracy. However, most current interactive segmentation frameworks are limited to 2D image data, and are not suitable for 3D image data due to the large size and high complexity of 3D data, as well as the challenges posed by information asymmetry and sparse annotation. In this paper, we propose SliceProp, an interactive segmentation framework that implements slice-wise Label Bidirectional Propagation (LBP) for 3D medical image segmentation. SliceProp extends the interactive 2D image segmentation algorithm to 3D image segmentation, and can handle 3D data with large size and high complexity. Moreover, equipped with a Backtracking Feedback Check (BFC) module, SliceProp effectively addresses the issues of information asymmetry and spatial sparse annotation in 3D medical image segmentation. Additionally, we adopt an uncertainty-based criterion to pri-oritize the slices to be refined interactively, which enhances the efficiency of the interaction process by enabling the model to focus on the regions with the most unreliable predictions. SliceProp is evaluated on two datasets and achieves promising results compared to state-of-the-art methods.

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OadTR: Online Action Detection with Transformers

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OadTR: Online Action Detection with Transformers

International Conference on Computer Vision (ICCV)

作者： Xiang Wang Shiwei Zhang Zhiwu Qing Yuanjie Shao Zhengrong Zuo Changxin Gao Nong Sang Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology China Alibaba Group China

ISBN: (纸本)9781665428132

Most recent approaches for online action detection tend to apply Recurrent Neural Network (RNN) to capture long-range temporal structure. However, RNN suffers from non-parallelism and gradient vanishing, hence it is hard to be optimized. In this paper, we propose a new encoder-decoder framework based on Transformers, named OadTR, to tackle these problems. The encoder attached with a task token aims to capture the relationships and global inter-actions between historical observations. The decoder extracts auxiliary information by aggregating anticipated future clip representations. Therefore, OadTR can recognize current actions by encoding historical information and predicting future context simultaneously. We extensively evaluate the proposed OadTR on three challenging datasets: HDD, TVSeries, and THUMOS14. The experimental results show that OadTR achieves higher training and inference speeds than current RNN based approaches, and significantly outperforms the state-of-the-art methods in terms of both mAP and mcAP. Code is available at https://***/wangxiang1230/OadTR.

关键词： Training Visualization Recurrent neural networks Streaming media Transformers Encoding Spatiotemporal phenomena

A pushing-grasping collaborative method based on deep q-network algorithm in dual perspectives

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arXiv 2021年

作者： Gang, Peng Jinhu, Liao Shangbin, Guan Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan China

Aiming at the traditional grasping method for manipulators based on 2D camera, when faced with the scene of gathering or covering, it can hardly perform well in unstructured scenes that appear as gathering and covering, for the reason that can’t recognize objects accurately in cluster scenes from a single perspective and the manipulators can’t make the environment better for grasping. In this case, a novel method of pushing-grasping collaborative based on the deep Q-network in dual perspectives is proposed in this paper. This method adopts an improved deep Q-network algorithm, with an RGB-D camera to obtain the information of objects’ RGB images and point cloud from two perspectives, and combines the pushing and grasping actions, so that the trained manipulator can make the scenes better for grasping, so that it can perform well in more complicated grasping scenes. What’s more, we improved the reward function of the deep Q-network and propose the piecewise reward function to speed up the convergence of the deep Q-network. We trained different models and tried different methods in the V-REP simulation environment, and it drew a conclusion that the method proposed in this paper converges quickly and the success rate of grasping objects in unstructured scenes raises up to 83.5%. Besides, it shows the generalization ability and well performance when novel objects appear in the scenes that the manipulator has never grasped before. Copyright © 2021, The Authors. All rights reserved.

关键词： Manipulators

Exploring Stronger Feature for Temporal Action Localization

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arXiv 2021年

作者： Qing, Zhiwu Wang, Xiang Huang, Ziyuan Feng, Yutong Zhang, Shiwei Jiang, Jianwen Tang, Mingqian Gao, Changxin Sang, Nong Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology China Alibaba Group China

Temporal action localization aims to localize starting and ending time with action category. Limited by GPU memory, mainstream methods pre-extract features for each video. Therefore, feature quality determines the upper bound of detection performance. In this technical report, we explored classic convolution-based backbones and the recent surge of transformer-based backbones. We found that the transformer-based methods can achieve better classification performance than convolution-based, but they cannot generate accuracy action proposals. In addition, extracting features with larger frame resolution to reduce the loss of spatial information can also effectively improve the performance of temporal action localization. Finally, we achieve 42.42% in terms of mAP on validation set with a single SlowFast [9] feature by a simple combination: BMN [16]+TCANet [19], which is 1.87% higher than the result of 2020 [20]’s multi-model ensemble. Finally, we achieve Rank 1st on the CVPR2021 HACS supervised Temporal Action Localization Challenge. Copyright © 2021, The Authors. All rights reserved.

关键词： Convolution