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Pigmented skin lesion detection using random forest and wavelet-based texture 7

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Pigmented skin lesion detection using random forest and wave...

Optics in Health Care and Biomedical Optics VII

作者： Hu, Ping Yang, Tie-Jun College of Information Science and Engineering Guilin University of Technology Guilin541004 China Guangxi Key Laboratory of Spatial Information and Geometrics Guilin University of Technology Guilin541004 China Guangdong Provincial Key Laboratory of Digital Signal and Image Processing Techniques Shantou University Shantou515063 China

ISBN: (纸本)9781510604674

The incidence of cutaneous malignant melanoma, a disease of worldwide distribution and is the deadliest form of skin cancer, has been rapidly increasing over the last few decades. Because advanced cutaneous melanoma is still incurable, early detection is an important step toward a reduction in mortality. Dermoscopy photographs are commonly used in melanoma diagnosis and can capture detailed features of a lesion. A great variability exists in the visual appearance of pigmented skin lesions. Therefore, in order to minimize the diagnostic errors that result from the difficulty and subjectivity of visual interpretation, an automatic detection approach is required. The objectives of this paper were to propose a hybrid method using random forest and Gabor wavelet transformation to accurately differentiate which part belong to lesion area and the other is not in a dermoscopy photographs and analyze segmentation accuracy. A random forest classifier consisting of a set of decision trees was used for classification. Gabor wavelets transformation are the mathematical model of visual cortical cells of mammalian brain and an image can be decomposed into multiple scales and multiple orientations by using it. The Gabor function has been recognized as a very useful tool in texture analysis, due to its optimal localization properties in both spatial and frequency domain. Texture features based on Gabor wavelets transformation are found by the Gabor filtered image. Experiment results indicate the following: (1) the proposed algorithm based on random forest outperformed the-state-of-the-art in pigmented skin lesions detection (2) and the inclusion of Gabor wavelet transformation based texture features improved segmentation accuracy significantly. © 2016 SPIE.

关键词： Decision trees

Construction of One-Gray Weight Codes and Two-Gray Weight Codes over Z4+uZ4

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Journal of Systems science & Complexity 2016年第5期29卷 1472-1484页

作者： SHI Minjia WANG Dandan GAO Jian WU Bo Key Laboratory of Intelligent Computing & Signal Processing Ministry of Education Anhui University Hefei 230039 China National Mobile Communications Research Laboratory Southeast University Nanjing 210096China School of Mathematical Sciences Anhui University Hefei 230601 China. School of Science Shandong University of Technology Zibo 255091 China State Key Laboratory of Information Security Institute of Information Engineering Chinese Academy of Sciences Bcijing 100093 China

This paper firstly gives some necessary conditions on one-Gray weight linear codes. And then we use these results to construct several classes of one-Gray weight linear codes over Z_4 +uZ_4(u^2=u) with type 16^(k_1)8^(k_2)8^(k_3)4^(k_4)4^(k_5)4^(k_6)2^(k_7)2^(k_8) based on a distance-preserving Gray map from(Z4 + u Z4)n to Z2n4. Secondly, the authors use the similar approach to do works on two-Gray(projective) weight linear codes. Finally, some examples are given to illustrate the construction methods.

关键词： Generator matrix Gray map linear code one-Gray weight code two-Gray weight code

Multiway Dynamic Trust Chain Model on Virtual Machine for Cloud Computing

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China Communications 2016年第7期13卷 83-91页

作者： Jie Zhu Guoyuan Lin Fucheng You Huaqun Liu Chunru Zhou School of Computer Science and Technology China University of Mining&TechnologyXuzhou 221116China State Key Laboratory for Novel Software Technology hosted at Nanjing University Nanjing 210093China Information Engineering School of Beijing Institute of Graphic Communication Beijing 102600China Beijing Key Laboratory of Signal and Information Processing for High-end Printing Equipment Beijing Institute of Graphic CommunicationBeijing 100026China Information Security Center Beijing University of Posts and TelecommunicationsBeijing 100876China Nanjing University of Information Science&Technology Nanjing 210044China

This paper sums up four security factors after analyzing co-residency threats caused by the special multitenant environment in the *** secure the factors,a multiway dynamic trust chain transfer model was proposed on the basis of a measurement interactive virtual machine and current behavior to protect the integrity of the system.A trust chain construction module is designed in a virtual machine *** dynamic monitoring,it achieves the purpose of transferring integrity between virtual machine.A cloud system with a trust authentication function is implemented on the basis of the model,and its practicability is shown.

关键词： cloud computing virtual machine trustworthiness measurement dynamic trust transfer

Biased decoy-state reference-frame-independent quantum key distribution

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arXiv 2017年

作者： Zhu, Jian-Rong Zhang, Chun-Mei Guo, Guang-Can Wang, Qin Institute of Signal Processing Transmission Nanjing University of Posts and Telecommunications Nanjing210003 China Key Lab of Broadband Wireless Communication and Sensor Network Technology Nanjing University of Posts and Telecommunications Ministry of Education Nanjing210003 China Key Laboratory of Quantum Information CAS University of Science and Technology of China Hefei230026 China

Without actively aligning the reference frames, the reference-frame-independent quantum key distribution (RFI-QKD) can generate secure keys even when the reference frames drift slowly. Here, we propose a new scheme on the decoy-state RFI-QKD, where the basis assignments of two legitimate parties are biased, reducing the fraction of mismatched-basis data. When accounting for statistical fluctuations under different misalignments of reference frames, we investigate the performance of biased decoy-state RFI-QKD with full parameter optimization. We also make a clear comparison between the new scheme with other practical schemes, e.g., unbiased decoy-state RFI-QKD and biased decoy-state BB84-QKD. Simulation results demonstrate that the new proposed biased decoy-state RFI-QKD can significantly improve the performance (secret key rate and secure transmission distance) of practical QKD systems. Copyright © 2017, The Authors. All rights reserved.

关键词： Quantum cryptography

Continuous use of ERP-based BCIs with different visual angles in ALS patients

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arXiv 2017年

作者： Jin, Jing Allison, Brendan Z. Zhang, Yu Chen, Yan Zhou, Sijie Dong, Yi Wang, Xingyu Chchocki, Andrzej Key Laboratory of Advanced Control and Optimization for Chemical Processes Ministry of Education East China University of Science and Technology Shanghai China Department of Neurology Huashan hospital Fudan University Shanghai China Department of Cognitive Science University of California at San Diego San DiegoCA United States Laboratory for Advanced Brain Signal Processing Brain Science Institute RIKEN Wako-shi Japan Systems Research Institute PAS Warsaw Poland Torun Poland

Objective: Amyotrophic lateral sclerosis (ALS) is a rare disease, but is also one of the most common motor neuron diseases, and people of all races and ethnic backgrounds are affected. There is currently no cure. Brain computer interfaces (BCIs) can establish a communication channel directly between the brain and an external device by recognizing brain activities that reflect user intent. Therefore, this technology could help ALS patients in promoting functional independence through BCI-based speller systems and motor assistive devices. Methods: In this paper, two kinds of ERP-based speller systems were tested on 18 ALS patients to: (1) assess performance when they spelled 42 characters online continuously, without a break;and (2) to compare performance between a matrix-based speller paradigm (MS-P, mean visual angle 6◦) and a new speller paradigm that used a larger visual angle called the large visual angle speller paradigm (LS-P, mean visual angle 8◦). Results: Although results showed that there were no significant differences between the two paradigms in accuracy trend over continuous use (p>0.05), the fatigue during the LS-P condition was significantly lower than that of MS-P (p Copyright © 2017, The Authors. All rights reserved.

关键词： Brain computer interface

Online Calibration of Intracortical Neural Interface Based on Transfer Learning

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Journal of Physics: Conference Series 2018年第1期1069卷

作者： Bo Peng Wei Li Jiping He School of Automation Huazhong University of Science and Technology Wuhan 430074 P. R. China Image Processing and Intelligent Control Key Laboratory of Education Ministry of China Wuhan 430074 P. R. China Department of Mechanical Engineering Beijing Institute of Technology Beijing 100081 P. R. China

In the application of neural interface, the neural activity of neurons and neuronal groups is not fixed even under the same task conditions. Meanwhile, the recording conditions of neural signals are also very unstable, with a high degree of within-and across-day variability. This results in a very unstable firing pattern for the recorded neural spike signals. In order to get better performance, the decoder often requires a lot of online calibration samples. This brings a heavy training burden to neural interface users. To solve this problem, this paper proposes to apply transfer learning (TL) to online calibration of intracortical neural interface to reduce the dependence of decoder on a large number of online calibration samples. Experimental results show that through transferring from a large amount of historical data, decoder can achieve satisfactory classification accuracy with only a small amount of online data.

关键词：

Topological sensitivity based far-field detection of elastic inclusions

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arXiv 2017年

作者： Abbas, Tasawar Khan, Shujaat Sajid, Muhammad Wahab, Abdul Ye, Jong Chul Department of Mathematics and Statistics Faculty of Basic and Applied Sciences International Islamic University Islamabad 44000 Pakistan Bio Imaging and Signal Processing Laboratory Department of Bio and Brain Engineering Korea Advanced Institute of Science and Technology 291 Daehak-ro Yuseong-gu Daejeon34141 Korea Republic of Department of Mathematical Sciences Korea Advanced Institute of Science and Technology 291 Daehak-ro Yuseong-gu Daejeon34141 Korea Republic of

The aim of this article is to present and rigorously analyze topological sensitivity based algorithms for detection of diametrically small inclusions in an isotropic homogeneous elastic formation using single and multiple measurements of the far-field scattering amplitudes. A L2−cost functional is considered and a location indicator is constructed from its topological derivative. The performance of the indicator is analyzed in terms of the topological sensitivity for location detection and stability with respect to measurement and medium noises. It is established that the location indicator does not guarantee inclusion detection and achieves only a low resolution when there is mode-conversion in an elastic formation. Accordingly, a weighted location indicator is designed to tackle the mode-conversion phenomenon. It is substantiated that the weighted function renders the location of an inclusion stably with resolution as per Rayleigh criterion.35R30, 34L25, 35L05, 49Q12, 45Q05, 74B05, 74J20, 74J25 Copyright © 2017, The Authors. All rights reserved.

关键词： Location

The Liver Tumor Segmentation Benchmark (LiTS)

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arXiv 2019年

作者： Bilic, Patrick Christ, Patrick Li, Hongwei Bran Vorontsov, Eugene Ben-Cohen, Avi Kaissis, Georgios Szeskin, Adi Jacobs, Colin Mamani, Gabriel Efrain Humpire Chartrand, Gabriel Lohöfer, Fabian Holch, Julian Walter Sommer, Wieland Hofmann, Felix Hostettler, Alexandre Lev-Cohain, Naama Drozdzal, Michal Amitai, Michal Marianne Vivanti, Refael Sosna, Jacob Ezhov, Ivan Sekuboyina, Anjany Navarro, Fernando Kofler, Florian Paetzold, Johannes C. Shit, Suprosanna Hu, Xiaobin Lipková, Jana Rempfler, Markus Piraud, Marie Kirschke, Jan Wiestler, Benedikt Zhang, Zhiheng Hülsemeyer, Christian Beetz, Marcel Ettlinger, Florian Antonelli, Michela Bae, Woong Bellver, Míriam Bi, Lei Chen, Hao Chlebus, Grzegorz Dam, Erik B. Dou, Qi Fu, Chi-Wing Georgescu, Bogdan Giró-I-Nieto, Xavier Gruen, Felix Han, Xu Heng, Pheng-Ann Hesser, Jürgen Moltz, Jan Hendrik Igel, Christian Isensee, Fabian Jäger, Paul Jia, Fucang Kaluva, Krishna Chaitanya Khened, Mahendra Kim, Ildoo Kim, Jae-Hun Kim, Sungwoong Kohl, Simon Konopczynski, Tomasz Kori, Avinash Krishnamurthi, Ganapathy Li, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Lowengrub, John Ma, Jun Maier-Hein, Klaus Maninis, Kevis-Kokitsi Meine, Hans Merhof, Dorit Pai, Akshay Perslev, Mathias Petersen, Jens Pont-Tuset, Jordi Qi, Jin Qi, Xiaojuan Rippel, Oliver Roth, Karsten Sarasua, Ignacio Schenk, Andrea Shen, Zengming Torres, Jordi Wachinger, Christian Wang, Chunliang Weninger, Leon Wu, Jianrong Xu, Daguang Yang, Xiaoping Yu, Simon Chun-Ho Yuan, Yading Yue, Miao Zhang, Liping Cardoso, Jorge Bakas, Spyridon Braren, Rickmer Heinemann, Volker Pal, Christopher Tang, An Kadoury, Samuel Soler, Luc van Ginneken, Bram Greenspan, Hayit Joskowicz, Leo Menze, Bjoern Department of Informatics Technical University of Munich Germany Department of Quantitative Biomedicine University of Zurich Switzerland Ecole Polytechnique de Montréal Canada Department of Medical Imaging Radboud University Medical Center Nijmegen Netherlands Department of Biomedical Engineering Tel-Aviv University Israel Germany Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Heidelberg Germany Philips Research China Philips China Innovation Campus Shanghai China School of Biomedical Engineering & Imaging Sciences King0s College London London United Kingdom Institute for AI in Medicine Technical University of Munich Germany Department of Computer Science Guangdong University of Foreign Studies China Institute for diagnostic and interventional radiology Klinikum rechts der Isar Technical University of Munich Germany Institute for Diagnostic and Interventional Neuroradiology Klinikum Rechts der Isar Technical University of Munich Germany Department of Hepatobiliary Surgery The Affiliated Drum Tower Hospital Nanjing University Medical School China Department of Computing Imperial College London London United Kingdom Institute for Tissue Engineering and Regenerative Medicine Helmholtz Zentrum München Neuherberg Germany Brigham and Women's Hospital Harvard Medical School United States School of Computer Science and Engineering The Hebrew University of Jerusalem Israel University of Pennsylvania PA United States Pte. Ltd. Singapore Medical Imaging and Reconstruction Lab Department of Engineering Design Indian Institute of Technology Madras India Sensetime Shanghai China Department of Radiology Perelman School of Medicine University of Pennsylvania United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PA United States Co. Ltd China MontréalQC Canada Department of Radiology Radiation Oncology and Nuclear Medicine University of Montréal

In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LiTS), which was organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2017 and the International Conferences on Medical image Computing and Computer-Assisted Intervention (MICCAI) 2017 and 2018. The image dataset is diverse and contains primary and secondary tumors with varied sizes and appearances with various lesion-to-background levels (hyper-/hypo-dense), created in collaboration with seven hospitals and research institutions. Seventy-five submitted liver and liver tumor segmentation algorithms were trained on a set of 131 computed tomography (CT) volumes and were tested on 70 unseen test images acquired from different patients. We found that not a single algorithm performed best for both liver and liver tumors in the three events. The best liver segmentation algorithm achieved a Dice score of 0.963, whereas, for tumor segmentation, the best algorithms achieved Dices scores of 0.674 (ISBI 2017), 0.702 (MICCAI 2017), and 0.739 (MICCAI 2018). Retrospectively, we performed additional analysis on liver tumor detection and revealed that not all top-performing segmentation algorithms worked well for tumor detection. The best liver tumor detection method achieved a lesion-wise recall of 0.458 (ISBI 2017), 0.515 (MICCAI 2017), and 0.554 (MICCAI 2018), indicating the need for further research. LiTS remains an active benchmark and resource for research, e.g., contributing the liver-related segmentation tasks in http://***/. In addition, both data and online evaluation are accessible via ***. © 2019, CC BY-NC-ND.

关键词： Deep learning

Constructing multi-modality and multi-classifier radiomics predictive models through reliable classifier fusion

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arXiv 2017年

作者： Zhou, Zhiguo Zhou, Zhi-Jie Hao, Hongxia Li, Shulong Chen, Xi Zhang, You Folkert, Michael Wang, Jing Department of Radiation Oncology UT Southwestern Medical Center DallasTX United States High-Tech Institute of Xi'an Xi'an China Department of Information and Control Engineering Xi'an University of Technology Xi'an China School of Computer Science and Technology Key Laboratory of Intelligent Perception and Image Understanding of Ministry of Education Xidian University Xi'an China School of Biomedical Engineering Southern Medical Unversity Guangzhou China Institute of Image Processing and Pattern Recognition Xi'an Jiaotong Unversity Xi'an China

Radiomics aims to extract and analyze large numbers of quantitative features from medical images and is highly promising in staging, diagnosing, and predicting outcomes of cancer treatments. Nevertheless, several challenges need to be addressed to construct an optimal radiomics predictive model. First, the predictive performance of the model may be reduced when features extracted from an individual imaging modality (e.g. PET, CT, MRI) are blindly combined into a single predictive model. Second, because many different types of classifiers are available to construct a predictive model, selecting an "optimal" classifier for a particular application is still challenging. In this work, we developed multi-modality and multi-classifier radiomics predictive models that address the aforementioned issues in currently available models. Specifically, a new reliable classifier fusion strategy was proposed to optimally combine output from different modalities and classifiers. In this strategy, modality-specific classifiers were first trained, and an analytic evidential reasoning (ER) rule was developed to fuse the output score from each modality to construct an optimal predictive model. One public datasets and two clinical case studies were performed to validate model performance. The experimental results indicated that the proposed ER rule based radiomics models outperformed the traditional models that rely on a single classifier or simply use combined features from different modalities. Copyright © 2017, The Authors. All rights reserved.

关键词： Diagnosis