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作者： Derya Akkaynak Eric Chan Justine J. Allen Roger T. Hanlon Joint Program in Oceanography Applied Ocean Science & Engineering Massachusetts Institute of Technology and Woods Hole Oceanographic Institution Cambridge MA USA Massachusetts Institute of Technology Cambridge MA US The Brown-MBL Graduate Biological and Environmental Sciences Providence RI USA Marine Biological Laboratory Woods Hole MA USA

Most underwater images are post-processed to look pleasing to human viewers. This often results in unrealistically saturated colors. Images taken for the purpose of studying color-sensitive topics such as marine animal coloration, must represent colors as accurately as possible and should not be arbitrarily enhanced. This first requires a transformation of colors from the camera color space to a device independent space. In this paper we present a method for transforming raw camera-RGB colors to a device independent space, optimizing this transformation for a particular underwater habitat. We have conducted an extensive study of the variation of color appearance underwater at a dive site in the Aegean Sea by taking 21 sets of spectrometry and irradiance readings with corresponding photographs of four different color standards. Spectral and photographic data were collected in the presence of natural daylight at various depths and under different weather conditions. In addition to the color charts, we have built a “habitat chart” to optimize this camera-specific transformation for a given dive site.

关键词： Image color analysis Cameras Lighting Sensitivity Humans Optical surface waves Optical sensors

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Corrigendum to “Lipid composition, caloric content, and novel oxidation products from microbial communities within seasonal pack ice cores” [Geochimica et Cosmochimica Acta 368 (2024) 12–23]

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Geochimica et Cosmochimica Acta 2024年 382卷 161-161页

作者： Henry C. Holm Helen F. Fredricks Shavonna M. Bent Daniel P. Lowenstein Kharis R. Schrage Benjamin A.S. Van Mooy Marine Chemistry and Geochemistry Department Woods Hole Oceanographic Institution Woods Hole MA 02543 USA MIT-WHOI Joint Program in Oceanography/Applied Ocean Science & Engineering Cambridge MA 02139 USA

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Low‐frequency diffraction from a free surface coupled to a semi‐infinite elastic surface as modeled by sea ice properties

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The Journal of the Acoustical Society of America 2005年第S1期85卷 S50-S50页

作者： Peter H. Dahl George V. Frisk MIT/WHOI Joint Program in Oceanography/Oceanographic Engineering Department of Ocean Engineering Massachusetts Institute of Technology Cambridge MA 02139 Department of Ocean Engineering Woods Hole Oceanographic Institution Woods Hole MA 02543

This paper discusses the solution of a low‐frequency plane wave incident upon a semi‐infinite elastic plate, such as an Arctic ice lend or free edge, using the Wiener‐Hopf method. By low‐frequency it is meant that the elastic properties of the plate are adequately described by the thin plate equation. For example, in a floating ice sheet, this translates into frequency‐ice thickness products that are ≲ 150. A key issue here is the fluid loading pertaining to sea ice and low‐frequency acoustics, which cannot be characterized by simplifying heavy or light fluid loading limits. An approximation to the exact kernel of the Wiener‐Hopf functional equation is used here, which is valid in this midrange fluid loading regime. The farfield diffracted pressure is found, which includes a fluid‐loaded, sub‐sonic (relative to the water) flexural wave in the ice plate. Comparisons are also made with the locally reacting approximation to the input impedance of an ice plate. The combined effects of the ice lead diffraction process represent loss mechanisms that contribute to the transmission loss in long‐range Arctic acoustic propagation.

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A self‐consistent theory of wave propagation and scattering through weakly inhomogeneous media

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The Journal of the Acoustical Society of America 2005年第S1期85卷 S70-S70页

作者： Dajun Tang George V. Frisk MIT/WHOI Joint Program in Oceanography/Oceanographic Engineering Department of Ocean Engineering Massachusetts Institute of Technology Cambridge MA 02139 Department of Ocean Engineering Woods Hole Oceanographic Institution Woods Hole MA 02543

A unified perturbation approach to wave propagation and scattering in weakly inhomogeneous media is presented. By separating the total wave field into an averaged coherent propagation part and a random scattering part, a set of coupled wave equations is found. The problem of a wave propagating in a random medium is changed to a problem of a pair of coupled waves propagating in a deterministic medium with randomly distributed sources. This method not only improves upon the conventional Born approximation for the scattered field, but also gives the attenuation behavior of the coherent propagating field related to the statistics of the random media. Examples of underwater acoustic waves in an inhomogeneous water column and an inhomogeneous bottom are given.

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Symptomatic and asymptomatic domoic acid exposure in zebrafish (Danio rerio) revealed distinct non-overlapping gene expression patterns in the brain

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Aquatic Toxicology 2022年 252卷 106310页

作者： Hidayat, Alia S. Lefebvre, Kathi A. MacDonald, James Bammler, Theo Aluru, Neelakanteswar MIT-WHOI Joint Program in Oceanography/Applied Ocean Science & Engineering Cambridge and Woods Hole MA United States Biology Department and Woods Hole Center for Oceans and Human Health Woods Hole Oceanographic Institution Woods Hole MA United States Environmental and Fisheries Science Division Northwest Fisheries Science Center National Marine Fisheries Service NOAA Seattle WA United States Department of Environmental and Occupational Health University of Washington Seattle WA United States

Domoic acid (DA) is a naturally produced neurotoxin synthesized by marine diatoms in the genus Pseudo-nitzschia. DA accumulates in filter-feeders such as shellfish, and can cause severe neurotoxicity when contaminated seafood is ingested, resulting in Amnesic Shellfish Poisoning (ASP) in humans. Overt clinical signs of neurotoxicity include seizures and disorientation. ASP is a significant public health concern, and though seafood regulations have effectively minimized the human risk of severe acute DA poisoning, the effects of exposure at asymptomatic levels are poorly understood. The objective of this study was to determine the effects of exposure to symptomatic and asymptomatic doses of DA on gene expression patterns in the zebrafish brain. We exposed adult zebrafish to either a symptomatic (1.1 ± 0.2 μg DA/g fish) or an asymptomatic (0.31 ± 0.03 µg DA/g fish) dose of DA by intracelomic injection and sampled at 24, 48 and 168 h post-injection. Transcriptional profiling was done using Agilent and Affymetrix microarrays. Our analysis revealed distinct, non-overlapping changes in gene expression between the two doses. We found that the majority of transcriptional changes were observed at 24 h post-injection with both doses. Interestingly, asymptomatic exposure produced more persistent transcriptional effects - in response to symptomatic dose exposure, we observed only one differentially expressed gene one week after exposure, compared to 26 in the asymptomatic dose at the same time (FDR <0.05). GO term analysis revealed that symptomatic DA exposure affected genes associated with peptidyl proline modification and retinoic acid metabolism. Asymptomatic exposure caused differential expression of genes that were associated with GO terms including circadian rhythms and visual system, and also the neuroactive ligand-receptor signaling KEGG pathway. Overall, these results suggest that transcriptional responses are specific to the DA dose and that asymptomatic exposure can

关键词： Domoic acid Excitotoxin Glutamate Harmful algal bloom toxin

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An integral equation approach to range‐dependent boundary value problems in ocean acoustics

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The Journal of the Acoustical Society of America 2005年第S1期83卷 S117-S117页

作者： Peter H. Dahl George V. Frisk MIT/WHOI Joint Program in Oceanography/Oceanographic Engineering Woods Hole Oceanographic Institution Woods Hole MA 02543 Department of Ocean Engineering Woods Hole Oceanographic Institution Woods Hole MA 02543

In ocean acoustics, the introduction of range discontinuities, for example, the water‐to‐ice canopy surface, creates a mixed boundary value problem. In this paper, an exact solution of certain mixed boundary value problems is discussed using the Wiener‐Hopf method. A key attribute of this approach is that it is not fundamentally numerical in nature and allows additional insight into the mathematical and physical structure of the acoustic field due to range discontinuities. The problem discussed here is a canonical one: A plane wave is incident upon a planar surface where the boundary condition changes from Dirichlet (free surface) to Neumann (hard). The boundary conditions addressed in this problem are highly idealized renditions of what happens, when, say, a plane wave is incident upon a water‐to‐ice canopy surface; nevertheless, important features of the diffraction process are produced here, and the solution gives considerable insight into the process. The solution of the diffracted potential is partitioned into two components: a field consisting of cylindrical waves weighted by a polar gain function, resulting from the artificial source created by the discontinuity in the boundary; and a field containing a residue contribution which restores field continuity along the line corresponding to specular reflection. Contour plots of equal pressure amplitude show how the component fields superimpose such that the boundary conditions are maintained, and how energy is redistributed across the angular spectrum in the diffraction process. The latter is related to mode coupling due to boundary changes in waveguide problems. [Work supported by ONR.]

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Correction: Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

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BMC bioinformatics 2023年第1期24卷 185页

作者： Arianna I Krinos Natalie R Cohen Michael J Follows Harriet Alexander MIT-WHOI Joint Program in Oceanography and Applied Ocean Science and Engineering Cambridge and Woods Hole MA USA. akrinos@mit.edu. Department of Biology Woods Hole Oceanographic Institution Woods Hole MA USA. akrinos@mit.edu. Department of Earth Atmospheric and Planetary Science Massachusetts Institute of Technology Cambridge MA USA. akrinos@mit.edu. Skidaway Institute of Oceanography University of Georgia Savannah GA USA. Department of Earth Atmospheric and Planetary Science Massachusetts Institute of Technology Cambridge MA USA. Department of Biology Woods Hole Oceanographic Institution Woods Hole MA USA. halexander@whoi.edu.

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Corrigendum to “Hydrothermal vents: A previously unrecognized source of actinium-227 to the deep ocean” [Marine Chemistry, Volume 177, Part 4, December 2015]

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Marine Chemistry 2022年 240卷

作者： Lauren E. Kipp Matthew A. Charette Douglas E. Hammond Willard S. Moore Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering USA Department of Marine Chemistry and Geochemistry Woods Hole Oceanographic Institution Woods Hole MA 02543 USA Department of Geological Sciences University of Southern California Los Angeles CA 90089 USA Department of Earth and Ocean Sciences University of South Carolina Columbia SC 29208 USA

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Temporal and spatial variability in vessel noise on tropical coral reefs

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Proceedings of Meetings on Acoustics 2016年第1期27卷

作者： Maxwell B. Kaplan T. Aran Mooney Marc O. Lammers Eden Zang 1Massachusetts Institute of Technology/Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering Cambridge MA USA mkaplan@whoi.edu 2Biology Department Woods Hole Oceanographic Institution Woods Hole MA USA amooney@whoi.edu 3Hawaii Institute of Marine Biology Kaneohe HI Oceanwide Science Institute Honolulu HI USA lammers@hawaii.edu 4Oceanwide Science Institute Honolulu HI USA edenzang@***

Coral reef soundscapes are dynamic, demonstrating amplitude and spectral variability across timescales from seconds to seasons. Some of this variability can result from spatiotemporally heterogeneous patterns of human activity. To characterize this variability and the extent to which anthropogenic sound can modify the biological soundscape, seven Hawaiian reefs were equipped with acoustic recorders operating on a 10% duty cycle for 16 months. Spatially, vessel activity was acoustically detected unevenly across reefs; for example, vessels were acoustically present almost every day at a popular snorkeling reef but were rare in a protected area closed to boats, which indicates that exposure of reef fauna to vessel noise will vary by reef. Temporally, vessel activity was most likely to occur during daylight hours, which is consistent with patterns of human activity. This heterogeneity in exposure could have implications for physiology and behavior and underscores the need for long-term acoustic monitoring alongside more targeted studies investigating the potential for effects of noise on aquatic organisms.

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Changes in ocean Heat, Carbon Content, and Ventilation: A Review of the First Decade of GO-SHIP Global Repeat Hydrography

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Marine Science 1000年第1期8卷 185-215页

作者： L.D. Talley R.A. Feely B.M. Sloyan R. Wanninkhof M.O. Baringer J.L. Bullister C.A. Carlson S.C. Doney R.A. Fine E. Firing N. Gruber D.A. Hansell M. Ishii G.C. Johnson K. Katsumata R.M. Key M. Kramp C. Langdon A.M. Macdonald J.T. Mathis E.L. McDonagh S. Mecking F.J. Millero C.W. Mordy T. Nakano C.L. Sabine W.M. Smethie J.H. Swift T. Tanhua A.M. Thurnherr M.J. Warner J.-Z. Zhang 1Scripps Institution of Oceanography University of California San Diego La Jolla California 92093 email: ltalley@ucsd.edu jswift@ucsd.edu 2Pacific Marine Environmental Laboratory National Oceanic and Atmospheric Administration Seattle Washington 98115 email: richard.a.feely@noaa.gov john.l.bullister@noaa.gov gregory.c.johnson@noaa.gov jeremy.mathis@noaa.gov chris.sabine@noaa.gov 3Commonwealth Scientific and Industrial Research Organisation (CSIRO) Hobart Tasmania 7001 Australia email: bernadette.sloyan@csiro.au 4Atlantic Oceanographic and Meteorological Laboratory National Oceanic and Atmospheric Administration Miami Florida 33149 email: rik.wanninkhof@noaa.gov molly.baringer@noaa.gov jia-zhong.zhang@noaa.gov 5Department of Ecology Evolution and Marine Biology University of California Santa Barbara Santa Barbara California 93106 email: carlson@lifesci.ucsb.edu 6Woods Hole Oceanographic Institution Woods Hole Massachusetts 02543 email: sdoney@whoi.edu amacdonald@whoi.edu 7Rosenstiel School of Marine and Atmospheric Science University of Miami Miami Florida 33149 email: rfine@rsmas.miami.edu dhansell@rsmas.miami.edu clangdon@rsmas.miami.edu fmillero@rsmas.miami.edu 8Department of Oceanography University of Hawai'i at Mānoa Honolulu Hawaii 96822 email: efiring@hawaii.edu 9Institute of Biogeochemistry and Pollutant Dynamics ETH Zurich Zurich 8092 Switzerland email: nicolas.gruber@env.ethz.ch 10Meteorological Research Institute Japan Meteorological Agency Tsukuba 305-0052 Japan email: mishii@mri-jma.go.jp 11Japan Agency for Marine-Earth Science and Technology (JAMSTEC) Yokosuka 237-0061 Japan email: k.katsumata@jamstec.go.jp 12Program in Atmospheric and Oceanic Sciences Princeton University Princeton New Jersey 08544 email: key@princeton.edu 13JCOMM in-situ Observations Programme Support Center (JCOMMOPS) Technopôle Brest Iroise Plouzané 29280 France email: mkramp@*** 14National Oceanography Centre Southampton SO14 3ZH United Kingdom email: e.mcdonagh@noc.ac.uk 15A

Global ship-based programs, with highly accurate, full water column physical and biogeochemical observations repeated decadally since the 1970s, provide a crucial resource for documenting ocean change. The ocean, a central component of Earth's climate system, is taking up most of Earth's excess anthropogenic heat, with about 19% of this excess in the abyssal ocean beneath 2,000 m, dominated by Southern ocean warming. The ocean also has taken up about 27% of anthropogenic carbon, resulting in acidification of the upper ocean. Increased stratification has resulted in a decline in oxygen and increase in nutrients in the Northern Hemisphere thermocline and an expansion of tropical oxygen minimum zones. Southern Hemisphere thermocline oxygen increased in the 2000s owing to stronger wind forcingand ventilation. The most recent decade of global hydrography has mapped dissolved organic carbon, a large, bioactive reservoir, for the first time and quantified its contribution to export production (∼20%) and deep-ocean oxygen utilization. Ship-based measurements also show that vertical diffusivity increases from a minimum in the thermocline to a maximum within the bottom 1,500 m, shifting our physical paradigm of the ocean's overturning circulation.

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