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arXiv 2022年

作者： Jafari, Mahboobeh Shoeibi, Afshin Ghassemi, Navid Heras, Jonathan Ling, Sai Ho Beheshti, Amin Zhang, Yu-Dong Wang, Shui-Hua Alizadehsani, Roohallah Gorriz, Juan M. Acharya, U. Rajendra Rokny, Hamid Alinejad Internship in BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia Data Science and Computational Intelligence Institute University of Granada Spain Department of Mathematics and Computer Science University of La Rioja La Rioja Spain Australia Data Analytics Lab Department of Computing Macquarie University SydneyNSW2109 Australia School of Computing and Mathematical Sciences University of Leicester Leicester United Kingdom Deakin University VIC3217 Australia Department of Psychiatry University of Cambridge United Kingdom School of Mathematics Physics and Computing University of Southern Queensland Springfield Australia BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia UNSW Data Science Hub The University of New South Wales SydneyNSW2052 Australia Research Centre Macquarie University Sydney2109 Australia

Myocarditis is a significant cardiovascular disease (CVD) that poses a threat to the health of many individuals by causing damage to the myocardium. The occurrence of microbes and viruses, including the likes of HIV, plays a crucial role in the development of myocarditis disease (MCD). The images produced during cardiac magnetic resonance imaging (CMRI) scans are low contrast, which can make it challenging to diagnose cardiovascular diseases. In other hand, checking numerous CMRI slices for each CVD patient can be a challenging task for medical doctors. To overcome the existing challenges, researchers have suggested the use of artificial intelligence (AI)-based computer-aided diagnosis systems (CADS). The presented paper outlines a CADS for the detection of MCD from CMR images, utilizing deep learning (DL) methods. The proposed CADS consists of several steps, including dataset, preprocessing, feature extraction, classification, and post-processing. First, the Z-Alizadeh dataset was selected for the experiments. Subsequently, the CMR images underwent various preprocessing steps, including denoising, resizing, as well as data augmentation (DA) via CutMix and MixUp techniques. In the following, the most current deep pre-trained and transformer models are used for feature extraction and classification on the CMR images. The findings of our study reveal that transformer models exhibit superior performance in detecting MCD as opposed to pre-trained architectures. In terms of DL architectures, the Turbulence Neural Transformer (TNT) model exhibited impressive accuracy, reaching 99.73% utilizing a 10-fold cross-validation approach. Additionally, to pinpoint areas of suspicion for MCD in CMRI images, the Explainable-based Grad Cam method was employed. © 2022, CC BY-NC-ND.

关键词： Diseases

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Autoencoder-based Ultrasonic NDT of Adhesive Bonds

Autoencoder-based Ultrasonic NDT of Adhesive Bonds

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IEEE SENSORS

作者： Ivan Kraljevski Frank Duckhorn Martin Barth Constanze Tschoepe Frank Schubert Matthias Wolff Cognitive Material Diagnostics Fraunhofer IKTS Cottbus Germany Machine Learning and Data Analysis Fraunhofer IKTS Dresden Germany Ultrasonic Sensors and Methods Fraunhofer IKTS Dresden Germany Chair of Communications Engineering BTU Cottbus-Senftenberg Cottbus Germany

We present an approach for ultrasonic non-destructive testing of adhesive bonding employing unsupervised machine learning with *** models are trained exclusively on the features derived from pulse-echo ultrasonic signals on a specimen with good adhesive bonding and tested on another specimen with artificially added *** resulting pseudo-probabilities indicating anomalies are visualized and presented along to the C-scan of the same specimen. As a result, we achieved improved representation of the defects, allowing their automatic and reliable detection.

关键词： Visualization Adhesives machine learning Probability Acoustics Sensors Reliability

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UCPM: Uncertainty-Guided Cross-Modal Retrieval with Partially Mismatched Pairs

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IEEE Transactions on Image Processing 2025年 34卷 3622-3634页

作者： Zha, Quanxing Liu, Xin Cheung, Yiu-Ming Peng, Shu-Juan Xu, Xing Wang, Nannan Huaqiao University Department of Computer Science Xiamen 361021 China Key Laboratory of Pattern Recognition and Computer Vision Xiamen 361021 China Huaqiao University Fujian Key Laboratory of Big Data Intelligence and Security Xiamen 361021 China Hong Kong Baptist University Department of Computer Science Hong Kong Huaqiao University Department of Artificial Intelligence Xiamen 361021 China Fujian Province University Key Laboratory of Computer Vision and Machine Learning (Huaqiao University) Xiamen 361021 China University of Electronic Science and Technology of China Center for Future Multimedia School of Computer Science and Engineering Chengdu 610051 China Xidian University State Key Laboratory of Integrated Services Networks Xi’an 710071 China

The manual annotation of perfectly aligned labels for cross-modal retrieval (CMR) is incredibly labor-intensive. As an alternative, the collection of co-occurring data pairs from the Internet is a remarkably cost-effective way, but which, inevitably induces the Partially Mismatched Pairs (PMPs) and therefore significantly degrades the retrieval performance without particular treatment. Previous efforts often utilize the pair-wise similarity to filter out the mismatched pairs, and such operation is highly sensitive to mismatched or ambiguous data and thus leads to sub-optimal performance. To alleviate these concerns, we propose an efficient approach, termed UCPM, i.e., Uncertainty-guided Cross-modal retrieval with Partially Mismatched pairs, which can significantly reduce the adverse impact of mismatched data pairs. Specifically, a novel Uncertainty Guided Division (UGD) strategy is sophisticatedly designed to divide the corrupted training data into confident matched (clean), easily-identifiable mismatched (noisy) and hardly-determined hard subsets, and the derived uncertainty can simultaneously guide the informative pair learning while reducing the negative impact of potential mismatched pairs. Meanwhile, an effective Uncertainty Self-Correction (USC) mechanism is concurrently presented to accurately identify and rectify the fluctuated uncertainty during the training process, which further improves the stability and reliability of the estimated uncertainty. Besides, a Trusted Margin Loss (TML) is newly designed to enhance the discriminability between those hard pairs, by dynamically adjusting their soft margins to amplify the positive contributions of matched pairs while suppressing the negative impacts of mismatched pairs. Extensive experiments on three widely-used benchmark datasets, verify the effectiveness and reliability of UCPM compared with the existing SOTA approaches, and significantly improve the robustness in both synthetic and real-world PMPs. The code i

关键词： Cross-modal retrieval partially mismatched pairs trusted margin loss uncertainty guided division uncertainty self-correction

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Efficient hierarchical Bayesian inference for spatio-temporal regression models in neuroimaging 21

Efficient hierarchical Bayesian inference for spatio-tempora...

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Proceedings of the 35th International Conference on Neural Information Processing Systems

作者： Ali Hashemi Yijing Gao Chang Cai Sanjay Ghosh Klaus-Robert Müller Srikantan S. Nagarajan Stefan Haufe Uncertainty Inverse Modeling and Machine Learning Group Technische Universität Berlin Germany and Machine Learning Group Technische Universität Berlin Germany Department of Radiology and Biomedical Imaging University of California San Francisco Department of Radiology and Biomedical Imaging University of California San Francisco and National Engineering Research Center for E-Learning Central China Normal University China Machine Learning Group Technische Universität Berlin Germany and BIFOLD – Berlin Institute for the Foundations of Learning and Data Berlin Germany and Department of Artificial Intelligence Korea University South Korea and Max Planck Institute for Informatics Saarbrücken Germany Uncertainty Inverse Modeling and Machine Learning Group Technische Universität Berlin Germany and Physikalisch-Technische Bundesanstalt Berlin Germany and Charité – Universitätsmedizin Berlin Germany and Bernstein Center for Computational Neuroscience Berlin Germany

ISBN: (纸本)9781713845393

Several problems in neuroimaging and beyond require inference on the parameters of multi-task sparse hierarchical regression models. Examples include M/EEG inverse problems, neural encoding models for task-based fMRI analyses, and climate science. In these domains, both the model parameters to be inferred and the measurement noise may exhibit a complex spatio-temporal structure. Existing work either neglects the temporal structure or leads to computationally demanding inference schemes. Overcoming these limitations, we devise a novel flexible hierarchical Bayesian framework within which the spatio-temporal dynamics of model parameters and noise are modeled to have Kronecker product covariance structure. Inference in our framework is based on majorization-minimization optimization and has guaranteed convergence properties. Our highly efficient algorithms exploit the intrinsic Riemannian geometry of temporal autocovariance matrices. For stationary dynamics described by Toeplitz matrices, the theory of circulant embeddings is employed. We prove convex bounding properties and derive update rules of the resulting algorithms. On both synthetic and real neural data from M/EEG, we demonstrate that our methods lead to improved performance.

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Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics

arXiv

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arXiv 2024年

作者： Seiffarth, Johannes Blöbaum, Luisa Paul, Richard D. Friederich, Nils Yamachui Sitcheu, Angelo Jovin Mikut, Ralf Scharr, Hanno Grünberger, Alexander Nöh, Katharina Institute of Bio- and Geosciences IBG-1: Biotechnology Forschungszentrum Jülich GmbH Jülich Germany RWTH Aachen University Aachen Germany Multiscale Bioengineering Bielefeld University Bielefeld Germany Institute for Advanced Simulation IAS-8: Data Analytics and Machine Learning Forschungszentrum Jülich GmbH Jülich Germany Institute for Automation and Applied Informatics Karlsruhe Institute of Technology Eggenstein-Leopoldshafen Germany Institute of Biological and Chemical Systems Karlsruhe Institute of Technology Eggenstein-Leopoldshafen Germany Microsystems in Bioprocess Engineering Karlsruhe Institute of Technology Karlsruhe Germany

Tracking the development of living cells in live-cell time-lapses reveals crucial insights into single-cell behavior and presents tremendous potential for biomedical and biotechnological applications. In microbial live-cell imaging (MLCI), a few to thousands of cells have to be detected and tracked within dozens of growing cell colonies. The challenge of tracking cells is heavily influenced by the experiment parameters, namely the imaging interval and maximal cell number. For now, tracking benchmarks are not widely available in MLCI and the effect of these parameters on the tracking performance are not yet known. Therefore, we present the largest publicly available and annotated dataset for MLCI, containing more than 1.4 million cell instances, 29k cell tracks, and 14k cell divisions. With this dataset at hand, we generalize existing tracking metrics to incorporate relevant imaging and experiment parameters into experiment-aware metrics. These metrics reveal that current cell tracking methods crucially depend on the choice of the experiment parameters, where their performance deteriorates at high imaging intervals and large cell colonies. Thus, our new benchmark quantifies the influence of experiment parameters on the tracking quality, and gives the opportunity to develop new data-driven methods that generalize across imaging and experiment parameters. The benchmark dataset is publicly available at https://***/doi/10.5281/zenodo.7260136. © 2024, CC BY.

关键词： Cytology

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Cost-Effective Communication in UDN in Indoor and Outdoor Environment via machine learning

Cost-Effective Communication in UDN in Indoor and Outdoor En...

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Artificial Intelligence and Knowledge Discovery in Concurrent engineering (ICECONF), International Conference on

作者： K Nattar Karman V. Velmurugan Kommisetti Murthy Raju T. Sajana V. Vijayalakshmi JoshuvaArockia Dhanraj Departmeru of Artificial Intelligence and Machine Learning Saveetha School of Engineering Chennai Tamil Nadu India Department of Electronics and Communication Engineering Vel Tech Rangarajan and Dr.Sagunthala R&D Institute of science and Technology Chennai Tamil Nadu India Department of Electronics and Communication Engineering Shri Vishnu Engineering College for Women West Godavari Andhra Pradesh India Department of Artificial Intelligence and Data Science KoneruLakshmaiah Education Foundation Vaddeswaram Andhra Pradesh India Department of Networking and Communications School of Computing SRM Institute of Science and Technology Kattankulathur Tamil Nadu India Department of Mechatronics Engineering Centre for Automation and Robotics (ANRO) Hindustan Institute of Technology and Science Chennai Tamil Nadu India

In general, applications on a densely populated network are slower. When there are no opportunities to interact with the devices on the network, the user is forced to communicate at some cost. Thus, the inconsistency that exists there increases the cost over that dense network. The single way to evaluate prospect usage is to look at that have used in the earlier period. This paper proposes an upgraded approach to upgrading existing services within the Ultra Dense cloud Network (UDN). In this way the cost for the services available there is calculated in advance and a system is developed to manage it effectively. This proposed method clearly shows that the effective cost can be managed by combining high-costservices and low-costservices separately. This will help to manage the various communication processes to achieve high effectiveness in Ultra Dense cloud Network (UDN). The proposed method achieves 93.28% of Cost-effective data Management.49% of Application log failure, 42 % of system log failure, 98% of network log management, 96% of security log management, 99% cost effective management.

关键词： Costs Mobility models machine learning Knowledge discovery Scheduling Energy efficiency Concurrent engineering

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Autonomous data extraction from peer reviewed literature for training machine learning models of oxidation potentials

arXiv

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arXiv 2023年

作者： Lee, Siwoo Heinen, Stefan Khan, Danish Von Lilienfeld, O. Anatole Department of Chemistry University of Toronto St. George campus TorontoON Canada Vector Institute for Artificial Intelligence TorontoONM5S 1M1 Canada Acceleration Consortium University of Toronto 80 St George St TorontoONM5S 3H6 Canada Department of Materials Science and Engineering University of Toronto St. George campus TorontoON Canada Department of Physics University of Toronto St. George campus TorontoON Canada Machine Learning Group Technische Universität Berlin Berlin Institute for the Foundations of Learning and Data Berlin Germany

We present an automated data-collection pipeline involving a convolutional neural network and a large language model to extract user-specified tabular data from peer-reviewed literature. The pipeline is applied to 74 reports published between 1957 and 2014 with experimentally-measured oxidation potentials for 592 organic molecules (-0.75-3.58 V). After data curation (solvents, reference electrodes, and missed data points), we trained multiple supervised machine learning models reaching prediction errors similar to experimental uncertainty (∼0.2 V). For experimental measurements of identical molecules reported in multiple studies, we identified the most likely value based on out-of-sample machine learning predictions. Using the trained machine learning models, we then estimated oxidation potentials of ∼132k small organic molecules from the QM9 data set, with predicted values spanning 0.21-3.46 V. Analysis of the QM9 predictions in terms of plausible descriptor-property trends suggests that aliphaticity increases the oxidation potential of an organic molecule on average from ∼1.5 V to ∼2 V, while an increase in number of heavy atoms lowers it systematically. The pipeline introduced offers significant reductions in human labor otherwise required for conventional manual data collection of experimental results, and exemplifies how to accelerate scientific research through automation. © 2023, CC0.

关键词： Pipelines

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A case-control study of reaction time deficits in a 3D virtual reality in patients with Post-COVID syndrome

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Scientific Reports 2024年第1期14卷 1-12页

作者： Güttes, Moritz Lucio, Marianna Skornia, Adam Rühl, Eva Steußloff, Fritz Zott, Julia Mardin, Christian Mehringer, Wolfgang Ganslmayer, Marion Michelson, Georg Hohberger, Bettina Department of Ophthalmology Universitätsklinikum Erlangen Friedrich-Alexander-Universität Erlangen- Nürnberg Erlangen Germany Research Unit Analytical BioGeoChemistry Helmholtz Zentrum München Neuherberg Germany Department Artificial Intelligence in Biomedical Engineering (AIBE) Machine Learning and Data Analytics Lab (MaD Lab) Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU) Erlangen Germany Department of Internal Medicine 1 Universitätsklinikum Erlangen Friedrich-Alexander-Universität Erlangen-Nürnberg Erlangen Germany

Following the Coronavirus disease 2019 (COVID-19) pandemic, a large number of people continue to report Post-COVID symptoms (PCS). A wide variety of symptoms are described, including fatigue, post-exertional malaise and cognitive impairment. However, adequate objective diagnostic tests for PCS are not yet available. Since the neurotropism of SARS-CoV-2 could be a possible factor for cognitive impairment, the aim of this study was to clarify whether visual reaction time (RT) in a stereoscopic setting can be a marker in PCS diagnostics. The Virtual-Reality-Oculomotor-Test-System (VR-OTS) was used testing binocular vision in 9 gaze directions via stereoscopic stimuli displayed in a virtual reality (VR)-environment (disparity: 275″, 550″, 1100″) in 179 individuals: 130 patients with PCS and 49 healthy controls. The results from the generalized linear models indicated that both group membership (PCS vs. control) and covariates (age and sex) yielded statistically significant different RT across the models. Accounting for the effect of covariates a statistically significant difference of RT was observed between patients with PCS and controls (disparity 275″ p-value = 0.001;550″ p-value = 0.001;1100″ p-value = 0.003). Patients with PCS performed worse in RT in all gaze directions, respectively. Adjusting for the influence of covariates, correct responses (CR) differed significantly between patients with PCS and controls (disparity 275″ p-value < 0.001;550″ p-value = 0.003;1100″ p-value = 0.019). Statistically significant effects of covariates on RT were observed for sex (disparity 275″ p-value = 0.047;550″ p-value = 0.012;1100″ p-value = 0.005) and age (disparity 275″ p-value < 0.001;550″ p-value < 0.001;1100″ p-value < 0.001). However, regarding covariates, no significant effects were found for CR, except for age at disparity 275″ (p-value = 0.035). The present data suggested that the mentioned variables uniquely contributed to explain the variation of the response variabl

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Traffic4cast at NeurIPS 2021 – Temporal and Spatial Few-Shot Transfer learning in Gridded Geo-Spatial Processes

arXiv

引用

arXiv 2022年

作者： Eichenberger, Christian Neun, Moritz Martin, Henry Herruzo, Pedro Spanring, Markus Lu, Yichao Choi, Sungbin Konyakhin, Vsevolod Lukashina, Nina Shpilman, Aleksei Wiedemann, Nina Raubal, Martin Wang, Bo Vu, Hai L. Mohajerpoor, Reza Cai, Chen Kim, Inhi Hermes, Luca Melnik, Andrew Velioglu, Riza Vieth, Markus Schilling, Malte Bojesomo, Alabi Al Marzouqi, Hasan Liatsis, Panos Santokhi, Jay Hillier, Dylan Yang, Yiming Sarwar, Joned Jordan, Anna Hewage, Emil Jonietz, David Tang, Fei Gruca, Aleksandra Kopp, Michael Kreil, David Hochreiter, Sepp Vienna Austria Institute of Cartography and Geoinformation ETH Zurich Switzerland Layer 6 AI Toronto Canada ITMO University Saint Petersburg Russia JetBrains Research Saint Petersburg Russia HSE University Saint Petersburg Russia Institute of Transport Studies Monash University ClaytonVIC Australia CSIRO’s Data61 Eveleigh Australia Institute Civil and Environmental Engineering Department Kongju National University Korea Republic of Machine Learning & Neuroinformatics Group Bielefeld University Germany Electrical Engineering and Computer Science Department Khalifa University Abu Dhabi United Arab Emirates Alchera Data Technologies Ltd Cambridge United Kingdom HERE Technologies Zurich Switzerland Silesian University of Technology Gliwice Poland Machine Learning Institute Johannes Kepler University Linz Austria

The IARAI Traffic4cast competitions at NeurIPS 2019 and 2020 showed that neural networks can successfully predict future traffic conditions 1 hour into the future on simply aggregated GPS probe data in time and space bins. We thus reinterpreted the challenge of forecasting traffic conditions as a movie completion task. U-Nets proved to be the winning architecture, demonstrating an ability to extract relevant features in this complex real-world geo-spatial process. Building on the previous competitions, Traffic4cast 2021 now focuses on the question of model robustness and generalizability across time and space. Moving from one city to an entirely different city, or moving from pre-COVID times to times after COVID hit the world thus introduces a clear domain shift. We thus, for the first time, release data featuring such domain shifts. The competition now covers ten cities over 2 years, providing data compiled from over 1012 GPS probe data. Winning solutions captured traffic dynamics sufficiently well to even cope with these complex domain shifts. Surprisingly, this seemed to require only the previous 1h traffic dynamic history and static road graph as input. © 2022, CC BY-NC-SA.

关键词： Probes

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Quantus: An Explainable AI Toolkit for Responsible Evaluation of Neural Network Explanations and Beyond

arXiv

引用

arXiv 2022年

作者： Hedström, Anna Weber, Leander Bareeva, Dilyara Krakowczyk, Daniel Motzkus, Franz Samek, Wojciech Lapuschkin, Sebastian Höhne, Marina M.-C. Understandable Machine Intelligence Lab TU Berlin Berlin10587 Germany Department of Electrical Engineering and Computer Science TU Berlin Berlin10587 Germany Department of Artificial Intelligence Fraunhofer Heinrich-Hertz-Institute Berlin10587 Germany Department of Computer Science University of Potsdam Potsdam14476 Germany BIFOLD - Berlin Institute for the Foundations of Learning and Data Berlin10587 Germany

The evaluation of explanation methods is a research topic that has not yet been explored deeply, however, since explainability is supposed to strengthen trust in artificial intelligence, it is necessary to systematically review and compare explanation methods in order to confirm their correctness. Until now, no tool with focus on XAI evaluation exists that exhaustively and speedily allows researchers to evaluate the performance of explanations of neural network predictions. To increase transparency and reproducibility in the field, we therefore built Quantus-a comprehensive, evaluation toolkit in Python that includes a growing, wellorganised collection of evaluation metrics and tutorials for evaluating explainable methods. The toolkit has been thoroughly tested and is available under an open-source license on PyPi (or on https://***/understandable-machine-intelligence-lab/Quantus/). © 2022, CC BY-NC-SA.

关键词： Python

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