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arXiv 2023年

作者： Yu, Shujian Li, Hongming Løkse, Sigurd Jenssen, Robert Príncipe, José C. The Machine Learning Group UiT - The Arctic University of Norway Tromsø Norway The Quantitative Data Analytics Group Vrije Universiteit Amsterdam Netherlands The Department of Electrical and Computer Engineering University of Florida GainesvilleFL32611 United States The Drones and Autonomous Systems group at NORCE Norwegian Research Centre Tromsø Norway The Pioneer AI Centre Copenhagen University The Norwegian Computing Center Oslo Norway

The Cauchy-Schwarz (CS) divergence was developed by Príncipe et al. in 2000. In this paper, we extend the classic CS divergence to quantify the closeness between two conditional distributions and show that the developed conditional CS divergence can be simply estimated by a kernel density estimator from given samples. We illustrate the advantages (e.g., rigorous faithfulness guarantee, lower computational complexity, higher statistical power, and much more flexibility in a wide range of applications) of our conditional CS divergence over previous proposals, such as the conditional KL divergence and the conditional maximum mean discrepancy. We also demonstrate the compelling performance of conditional CS divergence in two machine learning tasks related to time series data and sequential inference, namely time series clustering and uncertainty-guided exploration for sequential decision making. Copyright © 2023, The Authors. All rights reserved.

关键词： machine learning

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Fetal Re-Identification in Multiple Pregnancy Ultrasound Images Using Deep learning

Fetal Re-Identification in Multiple Pregnancy Ultrasound Ima...

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Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Elisabeth Gabler Michael Nissen Thomas R. Altstidl Adriana Titzmann Kai Packhäuser Andreas Maier Peter A. Fasching Bjoern M. Eskofier Heike Leutheuser Department Artificial Intelligence in Biomedical Engineering Machine Learning and Data Analytics (MaD) Lab Friedrich-Alexander-Universität Erlangen-Nurnberg (FAU) Erlangen Germany Department of Gynecology and Obstetrics Erlangen University Hospital Friedrich-Alexander-Universität Erlangen-Nurnberg (FAU) Erlangen Germany Department of Computer Science Pattern Recognition Lab Friedrich-Alexander-Universität Erlangen-Nurnberg (FAU) Erlangen Germany

Ultrasound examinations during pregnancy can detect abnormal fetal development, which is a leading cause of perinatal mortality. In multiple pregnancies, the position of the fetuses may change between examinations. The individual fetus cannot be clearly identified. Fetal re-identification may improve diagnostic capabilities by tracing individual fetal changes. This work evaluates the feasibility of fetal re-identification on FETAL_PLANES_DB, a publicly available dataset of singleton pregnancy ultrasound images. Five dataset subsets with 6,491 images from 1,088 pregnant women and two re-identification frameworks (Torchreid, FastReID) are evaluated. FastReID achieves a mean average precision of 68.77% (68.42%) and mean precision at rank 10 score of 89.60% (95.55%) when trained on images showing the fetal brain (abdomen). Visualization with gradient-weighted class activation mapping shows that the classifiers appear to rely on anatomical features. We conclude that fetal re-identification in ultrasound images may be feasible. However, more work on additional datasets, including images from multiple pregnancies and several subsequent examinations, is required to ensure and investigate performance stability and *** relevance— To date, fetuses in multiple pregnancies cannot be distinguished between ultrasound examinations. This work provides the first evidence for feasibility of fetal re-identification in pregnancy ultrasound images. This may improve diagnostic capabilities in clinical practice in the future, such as longitudinal analysis of fetal changes or abnormalities.

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Deep learning Based Prediction of Sun-Induced Fluorescence from Hyplant Imagery

Deep Learning Based Prediction of Sun-Induced Fluorescence f...

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IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Jim Buffat Miguel Pato Kevin Alonso Stefan Auer Emiliano Carmona Stefan Maier Rupert Müller Patrick Rademske Uwe Rascher Hanno Scharr Forschungszentrum Jülich GmbH Institute of Bio- and Geosciences IBG-2: Plant Sciences Jülich Germany German Aerospace Center (DLR) Earth Observation Center Remote Sensing Technology Institute Oberpfaffenhofen Germany RHEA Group c/o European Space Agency (ESA) Frascati Italy Forschungszentrum Jülich GmbH Institute of Advanced Simulations IAS-8: Data Analytics and Machine Learning Jülich Germany

The retrieval of sun-induced fluorescence (SIF) from hyper-spectral imagery is an ill-posed problem that has been tackled in different ways. We present a novel retrieval method combining semi-supervised deep learning with an existing spectral fitting method. A validation study with in-situ SIF measurements shows high sensitivity of the deep learning method to SIF changes even though systematic shifts deteriorate its absolute prediction accuracy. A detailed analysis of diurnal SIF dynamics and SIF prediction in topographically variable terrain highlights the benefits of this deep learning approach.

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Fast emulation of two-point angular statistics for photometric galaxy surveys

arXiv

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arXiv 2022年

作者： Bonici, Marco Biggio, Luca Carbone, Carmelita Guzzo, Luigi INAF-IASF Milano Via Alfonso Corti 12 MilanoI-20133 Italy Data Analytics Lab Institute of Machine Learning Department of Computer Science ETH Zürich Switzerland Dipartimento di Fisica Aldo Pontremoli Università Degli Studi di Milano INFN Sez. di Milano Via Celoria 16 MilanoI-20133 Italy INAF Osservatorio Astronomico di Brera Milano Italy

We develop a set of machine-learning based cosmological emulators, to obtain fast model predictions for the C() an-gular power spectrum coefficients characterising tomographic observations of galaxy clustering and weak gravitational lensing from multi-band photometric surveys (and their cross-correlation). A set of neural networks are trained to map cosmological parameters into the coefficients, achieving a speed-up O(103) in computing the required statistics for a given set of cosmological parameters, with respect to standard Boltzmann solvers, with an accuracy better than 0.175% ( Copyright © 2022, The Authors. All rights reserved.

关键词： Surveys

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: Quantum Artificial Intelligence for the Automotive Industry

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KI - Künstliche Intelligenz 2024年第4期38卷 351-359页

作者： Stollenwerk, Tobias Bhattacharya, Somtapa Cattelan, Michele Ciani, Alessandro Compostella, Gabriele Headley, David Klepsch, Johannes Klusch, Matthias Leder, Markus Macaluso, Antonio Michielsen, Kristel Nabok, Dmytro Papanikolaou, Anestis Rausch, Alexander Schumann, Marco Skolik, Andrea Yarkoni, Sheir Wilhelm, Frank K. Institute for Quantum Computing Analytics (PGI-12) Forschungszentrum Jülich Jülich Germany Volkswagen Data:Lab Volkswagen Group Munich Germany Machine Learning Research Lab Volkswagen Group Munich Germany Mercedes-Benz AG Stuttgart Germany BMW AG München Germany German Research Center for Artificial Intelligence (DFKI) Saarbrüecken Germany Jülich Supercomputing Centre (JSC) Forschungszentrum Jülich Jülich Germany Robert Bosch GmbH Corporate Research Renningen Germany

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Fast machine learning Simulator of At-Sensor Radiances for Solar-Induced Fluorescence Retrieval with DESIS and Hyplant

Fast Machine Learning Simulator of At-Sensor Radiances for S...

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IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Miguel Pato Kevin Alonso Stefan Auer Jim Buffat Emiliano Carmona Stefan Maier Rupert Müller Patrick Rademske Uwe Rascher Hanno Scharr Earth Observation Center Remote Sensing Technology Institute German Aerospace Center (DLR) Germany Largo Galileo Galilei RHEA Group c/o European Space Agency (ESA) Frascati Italy Institute of Bio- and Geosciences IBG-2: Plant Sciences Forschungszentrum Jülich GmbH Julich Germany Institute of Advanced Simulations IAS-8: Data Analytics and Machine Learning Forschungszentrum Jülich GmbH Jülich Germany

In many remote sensing applications the measured radiance needs to be corrected for atmospheric effects to study surface properties such as reflectance, temperature or emission features. The correction often applies radiative transfer to simulate atmospheric propagation, a time-consuming step usually done offline. In principle, an efficient machine learning (ML) model can accelerate the simulation step. This is the goal pursued here in the context of solar-induced fluorescence (SIF) emitted by vegetation around the O 2 -A band using the spaceborne DESIS and airborne HyPlant spectrometers. We present an ML simulator of at-sensor radiances trained on synthetic spectra and describe its performance in detail. The simulator is fast and accurate, constituting a promising alternative to a full-fledged, lengthy radiative transfer code for SIF retrieval in the O 2 -A band with DESIS and HyPlant.

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Automatic Diagnosis of Myocarditis Disease in Cardiac MRI Modality using Deep Transformers and Explainable Artificial Intelligence

arXiv

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arXiv 2022年

作者： Jafari, Mahboobeh Shoeibi, Afshin Ghassemi, Navid Heras, Jonathan Ling, Sai Ho Beheshti, Amin Zhang, Yu-Dong Wang, Shui-Hua Alizadehsani, Roohallah Gorriz, Juan M. Acharya, U. Rajendra Rokny, Hamid Alinejad Internship in BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia Data Science and Computational Intelligence Institute University of Granada Spain Department of Mathematics and Computer Science University of La Rioja La Rioja Spain Australia Data Analytics Lab Department of Computing Macquarie University SydneyNSW2109 Australia School of Computing and Mathematical Sciences University of Leicester Leicester United Kingdom Deakin University VIC3217 Australia Department of Psychiatry University of Cambridge United Kingdom School of Mathematics Physics and Computing University of Southern Queensland Springfield Australia BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia UNSW Data Science Hub The University of New South Wales SydneyNSW2052 Australia Research Centre Macquarie University Sydney2109 Australia

Myocarditis is a significant cardiovascular disease (CVD) that poses a threat to the health of many individuals by causing damage to the myocardium. The occurrence of microbes and viruses, including the likes of HIV, plays a crucial role in the development of myocarditis disease (MCD). The images produced during cardiac magnetic resonance imaging (CMRI) scans are low contrast, which can make it challenging to diagnose cardiovascular diseases. In other hand, checking numerous CMRI slices for each CVD patient can be a challenging task for medical doctors. To overcome the existing challenges, researchers have suggested the use of artificial intelligence (AI)-based computer-aided diagnosis systems (CADS). The presented paper outlines a CADS for the detection of MCD from CMR images, utilizing deep learning (DL) methods. The proposed CADS consists of several steps, including dataset, preprocessing, feature extraction, classification, and post-processing. First, the Z-Alizadeh dataset was selected for the experiments. Subsequently, the CMR images underwent various preprocessing steps, including denoising, resizing, as well as data augmentation (DA) via CutMix and MixUp techniques. In the following, the most current deep pre-trained and transformer models are used for feature extraction and classification on the CMR images. The findings of our study reveal that transformer models exhibit superior performance in detecting MCD as opposed to pre-trained architectures. In terms of DL architectures, the Turbulence Neural Transformer (TNT) model exhibited impressive accuracy, reaching 99.73% utilizing a 10-fold cross-validation approach. Additionally, to pinpoint areas of suspicion for MCD in CMRI images, the Explainable-based Grad Cam method was employed. © 2022, CC BY-NC-ND.

关键词： Diseases

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Monitoring medication optimization in patients with Parkinson’s disease

Monitoring medication optimization in patients with Parkinso...

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Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Hamid Moradi Julius Hannink Sabine Stallforth Till Gladow Stefan Ringbauer Martin Mayr Jürgen Winkler Jochen Klucken Bjoern M. Eskofier Department of Artificial Intelligence in Biomedical Engineering Machine Learning and Data Analytics Laboratory (MaD Lab) Friedrich Alexander University Erlangen Nuremberg Erlangen-Nuremberg Germany Portabiles HealthCare Technologies GmbH Erlangen Germany Department of Molecular-Neurology University Hospital Erlangen Erlangen Germany Medical Valley Digital Health Application Center Bamberg Germany NeuroSys GmbH Ulm Germany Luxembourg Institute of Health Centre Hospitalier du Luxembourg University of Luxembourg

Medication optimization is a common component of the treatment strategy in patients with Parkinson’s disease. As the disease progresses, it is essential to compensate for the movement deterioration in patients. Conventionally, examining motor deterioration and prescribing medication requires the patient’s onsite presence in hospitals or practices. Home-monitoring technologies can remotely deliver essential information to physicians and help them devise a treatment decision according to the patient’s need. Additionally, they help to observe the patient’s response to these changes. In this regard, we conducted a longitudinal study to collect gait data of patients with Parkinson’s disease while they received medication changes. Using logistic regression classifier, we could detect the annotated motor deterioration during medication optimization with an accuracy of 92%. Moreover, an in-depth examination of the best features illustrated a decline in gait speed and swing phase duration in the deterioration phases due to suboptimal *** relevance— Our proposed gait analysis method in this study provides objective, detailed, and punctual information to physicians. Revealing clinically relevant time points related to the patient’s need for medical adaption alleviates therapy optimization for physicians and reduces the duration of suboptimal treatment for patients. As the home-monitoring system acts remotely, embedding it in the medical care pathways could improve patients’ quality of life.

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Exploring the Capabilities of a Language Model-Only Approach for Depression Detection in Text data

Exploring the Capabilities of a Language Model-Only Approach...

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IEEE EMBS International Conference on Information Technology Applications in Biomedicine (ITAB)

作者： Misha Sadeghi Bernhard Egger Reza Agahi Robert Richer Klara Capito Lydia Helene Rupp Lena Schindler-Gmelch Matthias Berking Bjoern M. Eskofier Department Artificial Intelligence in Biomedical Engineering Machine Learning and Data Analytics Lab Friedrich-Alexander-Universität Erlangen- Nürnberg (FAU) Erlangen Germany Department of Computer Science Chair of Visual Computing Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU) Erlangen Germany Syenah GMBH Eschborn Germany Chair of Clinical Psychology and Psychotherapy Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU) Erlangen Germany

Depression is a prevalent and debilitating mental health condition that requires accurate and efficient detection for timely and effective treatment. In this study, we utilized the E-DAIC (Extended Distress Analysis Interview Corpus-Wizard-of-Oz) dataset, an extended version of the DAIC-WOZ dataset, which consists of semi-clinical interviews conducted by an animated virtual interviewer called Ellie, controlled by a human interviewer in another room. With 275 participants, the E-DAIC dataset represents a valuable resource for investigating depression detection methods. Our aim is to predict PHQ-8 scores through text analysis. Leveraging state-of-the-art speech processing, LLM-based text summarization, and a specialized depression detection module, we demonstrate the transformative potential of language data analysis in enhancing depression screening. By overcoming the limitations of manual feature extraction methods, our automated techniques provide a more efficient and effective means of evaluating depression. In our evaluation, we achieve robust accuracy on the development set of the E-DAIC dataset, with a Mean Absolute Error (MAE) of 3.65 in estimating PHQ-8 scores from recorded interviews. This remarkable performance highlights the efficacy of our approach in automatically predicting depression severity. Our research contributes to the growing evidence supporting the use of LLMs in mental health assessment, showcasing the role of innovative technologies in advancing patient care for depression.

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Rigid and non-rigid motion compensation in weight-bearing cone-beam CT of the knee using (noisy) inertial measurements

arXiv

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arXiv 2021年

作者： Maier, Jennifer Nitschke, Marlies Choi, Jang-Hwan Gold, Garry Fahrig, Rebecca Eskofier, Bjoern M. Maier, Andreas Pattern Recognition Lab Friedrich-Alexander-Universität Erlangen-Nürnberg Erlangen Germany Machine Learning and Data Analytics Lab Friedrich-Alexander-Universität Erlangen-Nürnberg Erlangen Germany Division of Mechanical and Biomedical Engineering Ewha Womans University Seoul Korea Republic of Department of Radiology School of Medicine Stanford University StanfordCA United States Innovation Advanced Therapies Siemens Healthcare GmbH Forchheim Germany

Involuntary subject motion is the main source of artifacts in weight-bearing cone-beam CT of the knee. To achieve image quality for clinical diagnosis, the motion needs to be compensated. We propose to use inertial measurement units (IMUs) attached to the leg for motion estimation. We perform a simulation study using real motion recorded with an optical tracking system. Three IMU-based correction approaches are evaluated, namely rigid motion correction, non-rigid 2D projection deformation and non-rigid 3D dynamic reconstruction. We present an initialization process based on the system geometry. With an IMU noise simulation, we investigate the applicability of the proposed methods in real applications. All proposed IMU-based approaches correct motion at least as good as a state-of-the-art marker-based approach. The structural similarity index and the root mean squared error between motion-free and motion corrected volumes are improved by 24-35% and 78-85%, respectively, compared with the uncorrected case. The noise analysis shows that the noise levels of commercially available IMUs need to be improved by a factor of 105 which is currently only achieved by specialized hardware not robust enough for the application. The presented study confirms the feasibility of this novel approach and defines improvements necessary for a real application. Copyright © 2021, The Authors. All rights reserved.

关键词： Motion compensation

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