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4th IEEE International Conference on Electronic Communications, Internet of Things and Big Data, ICEIB 2024

作者： Lai, Ming-Hui Liu, Don-Gey Cheng, Ching-Hwa Lai, Chung-Yu Master's Program of Biomedical Informatics and Biomedical Engineering Feng Chia University Taichung Taiwan Feng Chia University Department of Electronic Engineering Taichung Taiwan Hungkuang University Department of Medical Equipment Development and Application Taichung Taiwan

ISBN: (纸本)9798350360721

Spinocerebellar ataxia is a neurological disorder characterized by impaired neural coordination, leading to unstable gait, coordination difficulties, and other motor abnormalities. This disease significantly impacts patients' daily lives, making it challenging for them to maintain balance, walk smoothly, and even perform fine motor skills. The causes of spinocerebellar ataxia are diverse, including genetic factors, brain injuries, or certain diseases. Many patients with spinocerebellar ataxia require specialized medical care and ongoing monitoring to manage its effects. This study aims to utilize Human Posture Estimation to detect the gait patterns of patients with spinocerebellar ataxia and integrate it with a deep learning model to distinguish between normal and affected individuals. The outcomes offer physicians an objective diagnostic tool and facilitate early detection and intervention for patients with impaired gait, thereby supporting the enhancement or preservation of their quality of life. The current prediction accuracy for the risk of ataxia gait is 80%, with an F1 score of 78.26%. It is necessary to conduct a detailed quantitative assessment by analyzing the gait of patients with spinocerebellar ataxia. Quantitative evaluation of the data allows for an objective assessment of the patient's gait, which helps healthcare professionals to more accurately understand and assess the gait status of patients with spinocerebellar ataxia. © 2024 IEEE.

关键词： Gait analysis

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Unitig-centered pan-genome machine learning approach for predicting antibiotic resistance and discovering novel resistance genes in bacterial strains

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Computational and Structural Biotechnology Journal 2024年 23卷 1864-1876页

作者： Do, Duyen Thi Yang, Ming-Ren Vo, Tran Nam Son Le, Nguyen Quoc Khanh Wu, Yu-Wei Graduate Institute of Biomedical Informatics College of Medical Science and Technology Taipei Medical University Taipei Taiwan Department of Electrical Engineering National Taiwan University of Science and Technology Taipei Taiwan Department of Business Administration College of Management Lunghwa University of Science and Technology Taoyuan City Taiwan Professional Master Program in Artificial Intelligence in Medicine College of Medicine Taipei Medical University Taipei Taiwan Clinical Big Data Research Center Taipei Medical University Hospital Taipei Taiwan TMU Research Center for Digestive Medicine Taipei Medical University Taipei Taiwan

In current genomic research, the widely used methods for predicting antimicrobial resistance (AMR) often rely on prior knowledge of known AMR genes or reference genomes. However, these methods have limitations, potentially resulting in imprecise predictions owing to incomplete coverage of AMR mechanisms and genetic variations. To overcome these limitations, we propose a pan-genome-based machine learning approach to advance our understanding of AMR gene repertoires and uncover possible feature sets for precise AMR classification. By building compacted de Brujin graphs (cDBGs) from thousands of genomes and collecting the presence/absence patterns of unique sequences (unitigs) for Pseudomonas aeruginosa, we determined that using machine learning models on unitig-centered pan-genomes showed significant promise for accurately predicting the antibiotic resistance or susceptibility of microbial strains. Applying a feature-selection-based machine learning algorithm led to satisfactory predictive performance for the training dataset (with an area under the receiver operating characteristic curve (AUC) of > 0.929) and an independent validation dataset (AUC, approximately 0.77). Furthermore, the selected unitigs revealed previously unidentified resistance genes, allowing for the expansion of the resistance gene repertoire to those that have not previously been described in the literature on antibiotic resistance. These results demonstrate that our proposed unitig-based pan-genome feature set was effective in constructing machine learning predictors that could accurately identify AMR pathogens. Gene sets extracted using this approach may offer valuable insights into expanding known AMR genes and forming new hypotheses to uncover the underlying mechanisms of bacterial AMR. © 2024 The Authors

关键词： Genes

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Early-Life Risks of Central Precocious Puberty

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Endocrine Practice 2025年第6期31卷 758-765页

作者： Yin, Wei-Jou Hsu, Jhih-Wei Chen, Chun-Chang Su, Emily Chia-Yu Wang, San-Yuan Chen, Yan-Jen Chen, Yang-Ching College of Medicine Taipei Medical University Taipei Taiwan Department of Family Medicine School of Medicine College of Medicine Taipei Medical University Taipei Taiwan Graduate Institute of Biomedical Informatics Taipei Medical University Taipei Taiwan Master Program in Clinical Genomics and Proteomics Department of Pharmaceutical Sciences Taipei Medical University Taipei Taiwan Department of Family Medicine Wan Fang Hospital Taipei Medical University Taipei Taiwan Nutrition Research Center Taipei Medical University Hospital Taipei Taiwan

Objectives: To investigate the factors in early life that may contribute to central precocious puberty (CPP). Methods: The study utilized data from the Taiwan Puberty Longitudinal Study, including 2241 children under pubertal assessment and a questionnaire of risk factors. We analyzed associations using the Fitting Generalized Linear Models in R (R Core Team, 2023), with R studio (Posit, 2023) version 4.3.1. Results: Among the 2241 children examined, 745 had CPP. Overall, higher gestational weight gain (GWG) increased the risk of CPP (odds ratio [OR]: 1.03, 95% CI: 1.01-1.05);while higher GWG served as a protective factor in females (OR: 0.97, 95% CI: 0.95-0.99). Maternal gestational diabetes mellitus (GDM) also increased the CPP risk, particularly in males (OR: 2.66, 95% CI: 1.00-7.25). Longer exclusive breastfeeding was linked to lower CPP risk overall (OR: 0.96, 95% CI: 0.93-1.00) but was not significant when analyzed by gender. Conclusions: Higher maternal GWG was associated with an increased risk of CPP overall, while GWG became negatively associated with CPP, only in females. Maternal GDM was linked to a higher risk of CPP, particularly in males. The duration of exclusive breastfeeding was inversely correlated with CPP risk, but this effect was not significant when analyzed by gender. © 2025 AACE

关键词： central precocious puberty early-life risk factors pediatrics

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Low-Cost Air Box Application for Indoor Environment Classification and LSTM Microclimate Prediction 6

Low-Cost Air Box Application for Indoor Environment Classifi...

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6th International Conference on Control and Robotics, ICCR 2024

作者： Hsun-Jui, Hu Yu-Hsien, Chiu Pei-Ching, Yang Chang Jung Christian University Master Degree Program in Information and Design Tainan Taiwan Kaohsiung Medical University Department of Healthcare Administration and Medical Informatics Kaohsiung Taiwan Artificial Intelligence Research Center Chang Jung Christian University Tainan Taiwan Chang Jung Christian University Department of Computer Science and Information Engineering Tainan Taiwan

ISBN: (纸本)9798331518158

Air pollution is a significant issue because it burdens human health and the environment. Particulate matter with a diameter of 2.5 micrometers or smaller (PM2.5) can penetrate the lungs and enter the bloodstream, seriously affecting the cardiovascular system, causing strokes, and impacting the respiratory system. Modern individuals spend 70% to 90% of their time indoors, making indoor air quality even more important than outdoor air quality. To estimate and predict indoor air quality, this study utilizes low-cost, self-assembled air boxes based on the Internet of Things to collect various air quality data. The collected data is then used in an indoor air quality forecasting system that combines Long Short-Term Memory (LSTM) and K-means clustering methods to compare the overall performance of the algorithms. The experimental results are analyzed and statistically described based on each model method prediction accuracy and clustering results. These methods are integrated to develop an indoor air quality forecasting system to help indoor populations prevent issues in advance or optimize energy usage. © 2024 IEEE.

关键词： Indoor air pollution

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Improved IP lookup technology for trie-based data structures

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Journal of Computer and System Sciences 2023年 133卷 41-55页

作者： Lin, Yen-Heng Hsieh, Sun-Yuan Master Degree Program on Artificial Intelligence National Cheng Kung University Tainan701 Taiwan Department of Computer Science and Information Engineering Institute of Manufacturing Information Systems Institute of Medical Informatics National Cheng Kung University Tainan701 Taiwan Department of Computer Science and Information Engineering National Chi Nan University Nantou Puli Township54561 Taiwan

Many Internet protocol (IP) lookup algorithms have been formulated to improve network performance. This study reviewed and experimentally evaluated technologies for trie-based methods that reduce memory access, memory consumption and IP lookup time. Experiments involving binary tries (for simplicity) were conducted on four real-world data sets, two of which were on IPv4 router tables (855,997 and 876,489 active prefixes) and two of which were on IPv6 router tables (155,310 and 157,579 active prefixes). Technologies designed to reduce time taken (at the expense of memory consumption) worked well for IPv4, and those designed to reduce memory consumption worked well for IPv6. Various combinations of these technologies were applied together in the experiments. © 2022 Elsevier Inc.

关键词： Table lookup

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Supervised Learning Models for Early Detection of Albuminuria Risk in Type-2 Diabetes Mellitus Patients 10

Supervised Learning Models for Early Detection of Albuminuri...

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10th International Conference on Advanced informatics: Concept, Theory and Application, ICAICTA 2023

作者： Muharram, Arief Purnama Tahapary, Dicky Levenus Lestari, Yeni Dwi Sarayar, Randy Dirjayanto, Valerie Josephine School of Electrical Engineering and Informatics Master Program of Informatics Institut Teknologi Bandung Bandung Indonesia Indonesia Medical Education and Research Institute Universitas Indonesia Metabolic Disorder Cardiovascular and Aging Research Center Faculty of Medicine Jakarta Indonesia Universitas Indonesia Faculty of Medicine Cipto Mangunkusumo General Hospital Ophthalmology Department Jakarta Indonesia Universitas Indonesia Faculty of Medicine Jakarta Indonesia

ISBN: (纸本)9798350329919

Diabetes, especially T2DM, continues to be a significant health problem. One of the major concerns associated with diabetes is the development of its complications. Diabetic nephropathy, one of the chronic complication of diabetes, adversely affects the kidneys, leading to kidney damage. Diagnosing diabetic nephropathy involves considering various criteria, one of which is the presence of a pathologically significant quantity of albumin in urine, known as albuminuria. Thus, early prediction of albuminuria in diabetic patients holds the potential for timely preventive measures. This study aimed to develop a supervised learning model to predict the risk of developing albuminuria in T2DM patients. The selected supervised learning algorithms included Naive Bayes, Support Vector Machine (SVM), decision tree, random forest, AdaBoost, XGBoost, and Multi-Layer Perceptron (MLP). Our private dataset, comprising 184 entries of diabetes complications risk factors, was used to train the algorithms. It consisted of 10 attributes as features and 1 attribute as the target (albuminuria). Upon conducting the experiments, the MLP demonstrated superior performance compared to the other algorithms. It achieved accuracy and f1-score values as high as 0.74 and 0.75, respectively, making it suitable for screening purposes in predicting albuminuria in T2DM. Nonetheless, further studies are warranted to enhance the model's performance. © 2023 IEEE.

关键词： Forecasting

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Single-cell transcriptomics uncovers EGFR signaling-mediated gastric progenitor cell differentiation in stomach homeostasis (vol 14, 3750, 2023)

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NATURE COMMUNICATIONS 2023年第1期14卷 1-16页

作者： Takada, Hitomi Sasagawa, Yohei Yoshimura, Mika Tanaka, Kaori Iwayama, Yoshimi Hayashi, Tetsutaro Isomura-Matoba, Ayako Nikaido, Itoshi Kurisaki, Akira Laboratory of Stem Cell Technologies Graduate School of Science and Technology Nara Institute of Science and Technology Takayama-cho Ikoma Nara Japan Laboratory for Bioinformatics Research RIKEN Center for Biosystems Dynamics Research Wako Saitama Japan Department of Functional Genome Informatics Biological Data Science Medical Research Institute Tokyo Medical and Dental University Bunkyo Tokyo Japan Master’s/Doctoral Program in Life Science Innovation (Bioinformatics) Degree Programs in Systems and Information Engineering Graduate School of Science and Technology University of Tsukuba Tsukuba Ibaraki Japan

Defects in gastric progenitor cell differentiation are associated with various gastric disorders, including atrophic gastritis, intestinal metaplasia, and gastric cancer. However, the mechanisms underlying the multilineage differentiation of gastric progenitor cells during healthy homeostasis remain poorly understood. Here, using a single-cell RNA sequencing method, Quartz-Seq2, we analyzed the gene expression dynamics of progenitor cell differentiation toward pit cell, neck cell, and parietal cell lineages in healthy adult mouse corpus tissues. Enrichment analysis of pseudotime-dependent genes and a gastric organoid assay revealed that EGFR-ERK signaling promotes pit cell differentiation, whereas NF-κB signaling maintains gastric progenitor cells in an undifferentiated state. In addition, pharmacological inhibition of EGFR in vivo resulted in a decreased number of pit cells. Although activation of EGFR signaling in gastric progenitor cells has been suggested as one of the major inducers of gastric cancers, our findings unexpectedly identified that EGFR signaling exerts a differentiation-promoting function, not a mitogenic function, in normal gastric homeostasis.

关键词： Adult stem cells Stem-cell differentiation Stem-cell niche

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Quantitative Assessment of Gait in Spinocerebellar Ataxia Using Deep Learning

Quantitative Assessment of Gait in Spinocerebellar Ataxia Us...

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Electronic Communications, Internet of Things and Big Data (ICEIB), International Conference on

作者： Ming-Hui Lai Don-Gey Liu Ching-Hwa Cheng Chung-Yu Lai Master's Program of Biomedical Informatics and Biomedical Engineering Feng Chia University Taichung Taiwan Department of Electronic Engineering Feng Chia University Taichung Taiwan Department of Medical Equipment Development and Application Hungkuang University Taichung Taiwan

ISBN: (数字)9798350360721

ISBN: (纸本)9798350360738

关键词： Deep learning Neurological diseases Accuracy medical services Motors Feature extraction Skeleton

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Benefits and drawbacks of radiofrequency ablation via percutaneous or minimally invasive surgery for treating hepatocellular carcinoma

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World Journal of Gastrointestinal Surgery 2024年第11期16卷 3400-3407页

作者： Ching-Lung Hsieh Cheng-Ming Peng Chun-Wen Chen Chang-Hsien Liu Chih-Tao Teng Yi-Jui Liu Department of Computer Science and Information Engineering Feng Chia UniversityTaichung 40724Taiwan Department of Surgery Chung Shan Medical University HospitalTaichung 40201Taiwan School of Medicine Chung Shan Medical UniversityTaichung 40201Taiwan Department of Radiology Taichung Armed Forces General HospitalTaichung 406Taiwan Department of Medical Imaging and Radiological Sciences Central Taiwan University of Science and TechnologyTaichung 406Taiwan Department of Radiology School of MedicineNational Defense Medical CenterTaipei 11490Taiwan Department of Medical Imaging China Medical University Hsinchu Hospital and China Medical UniversityHsinchu 302Taiwan Institute of Nuclear Engineering and Science National Tsing Hua UniversityHsinchu 300Taiwan Department of Radiology Nantou Hospital of the Ministry of Health and WelfareNantou 540Taiwan Master’s Program of Biomedical Informatics and Biomedical Engineering Feng Chia UniversityTaichung 407Taiwan Department of Automatic Control Engineering Feng Chia UniversityTaichung 407Taiwan

The management of early stage hepatocellular carcinoma(HCC)presents significant *** radiofrequency ablation(RFA)has shown safety and effectiveness in treating HCC,with lower mortality rates and shorter hospital stays,its high recurrence rate remains a significant ***,achieving improved survival solely through RFA is challenging,particularly in retrospective studies with inherent *** is commonly used for guiding percutaneous RFA,but its low contrast can lead to missed tumors and the risk of HCC *** enhance the efficiency of ultrasound-guided percutaneous RFA,various techniques such as artificial ascites and contrast-enhanced ultrasound have been developed to facilitate complete tumor *** invasive surgery(MIS)offers advantages over open surgery and has gained traction in various surgical *** studies suggest that laparoscopic intraoperative RFA(IORFA)may be more effective than percutaneous RFA in terms of survival for HCC patients unsuitable for surgery,highlighting its ***,combining MIS-IORFA with these enhanced percutaneous RFA techniques may hold greater significance for HCC treatment using the MIS-IORFA *** article reviews liver resection and RFA in HCC treatment,comparing their merits and proposing a trajectory involving their combination in future therapy.

关键词： Percutaneous radiofrequency ablation Minimally invasive surgery Hepatocellular carcinoma Intraoperative radiofrequency ablation Contrast-enhanced ultrasound

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Understanding ADC variation by fat content effect using a dual-function MRI phantom

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European Radiology Experimental 2024年第1期8卷 19页

作者： Liu, Yi-Jui Tsai, Tung-Sheng Li, Ya-Hui Peng, Jo-Hua Chang, Hing-Chiu Peng, Hsu-Hsia Lee, Ying-Chieh Lee, Tung-Yang Liou, Chang-Hsien Lin, Tz-Feng Chew, Fatt-Yang Chou, Ruey-Hwang Juan, Chun-Jung Department of Automatic Control Engineering Feng Chia University Taichung Taiwan Ph.D. Program in Electrical and Communication Engineering Feng Chia University Taichung Taiwan Department of Medical Imaging China Medical University Hsinchu Hospital 199 Sec. 1 Xinglong Rd. Hsinchu County Zhubei City 302 Taiwan Department of Biomedical Engineering and Environmental Sciences National Tsing Hua University Hsinchu Taiwan Department of Biomedical Engineering Chinese University of Hong Kong Hong Kong Master’s Program of Biomedical Informatics and Biomedical Engineering Feng Chia University Taichung Taiwan Cheng Ching Hospital Taichung Taiwan Institute of Nuclear Engineering and Science National Tsing Hua University Hsinchu Taiwan Department of Fiber and Composite Materials Feng Chia University Taichung Taiwan Department of Medical Imaging China Medical University Hospital Taichung Taiwan Department of Radiology School of Medicine China Medical University Taichung Taiwan Graduate Institute of Biomedical Sciences China Medical University Taichung 406 Taiwan Center for Molecular Medicine China Medical University Hospital Taichung Taiwan Department of Medical Laboratory and Biotechnology Asia University Taichung Taiwan

Background: A dual-function phantom designed to quantify the apparent diffusion coefficient (ADC) in different fat contents (FCs) and glass bead densities (GBDs) to simulate the human tissues has not been documented yet. We propose a dual-function phantom to quantify the FC and to measure the ADC at different FCs and different GBDs. Methods: A fat-containing diffusion phantom comprised by 30 glass-bead-containing fat-water emulsions consisting of six different FCs (0, 10, 20, 30, 40, and 50%) multiplied by five different GBDs (0, 0.1, 0.25, 0.5, and 1.0 g/50 mL). The FC and ADC were measured by the “iterative decomposition of water and fat with echo asymmetry and least squares estimation-IQ,” IDEAL-IQ, and single-shot echo-planar diffusion-weighted imaging, SS-EP-DWI, sequences, respectively. Linear regression analysis was used to evaluate the relationship among the fat fraction (FF) measured by IDEAL-IQ, GBD, and ADC. Results: The ADC was significantly, negatively, and linearly associated with the FF (the linear slope ranged from -0.005 to -0.017, R² = 0.925 to 0.986, all p < 0.001). The slope of the linear relationship between the ADC and the FF, however, varied among different GBDs (the higher the GBD, the lower the slope). ADCs among emulsions across different GBDs and FFs were overlapped. Emulsions with low GBDs plus high FFs shared a same lower ADC range with those with median or high GBDs plus median or lower FFs. Conclusions: A novel dual-function phantom simulating the human tissues allowed to quantify the influence of FC and GBD on ADC. Relevance statement: The study developed an innovative dual-function MRI phantom to explore the impact of FC on ADC variation that can affect clinical results. The results revealed the superimposed effect on FF and GBD density on ADC measurements. Key points: • A dual-function phantom made of glass bead density (GBD) and fat fraction (FF) emulsion has been developed. • Apparent diffusion coefficient (ADC) values

关键词： Adipose tissue Diffusion magnetic resonance imaging Phantoms (imaging) Quality assurance (healthcare) Quality control

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