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Skin cancer detection based on deep learning and entropy to detect outlier samples

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arXiv 2019年

作者： Pacheco, Andre G. C. Ali, Abder-Rahman Trappenberg, Thomas Graduate Program in Computer Science Federal University of Espírito Santo Faculty of Computer Science Dalhousie University Faculty of Natural Sciences Computing Science and Mathematics University of Stirling

We describe our methods to address both tasks of the ISIC 2019 challenge. The goal of this challenge is to provide the diagnostic for skin cancer using images and meta-data. There are nine classes in the dataset, nonetheless, one of them is an outlier and is not present on it. To tackle the challenge, we apply an ensemble of classifiers, which has 13 convolutional neural networks (CNN), we develop two approaches to handle the outlier class and we propose a straightforward method to use the meta-data along with the images. Throughout this report, we detail each methodology and parameters to make it easy to replicate our work. The results obtained are in accordance with the previous challenges and the approaches to detect the outlier class and to address the meta-data seem to be work properly. Copyright © 2019, The Authors. All rights reserved.

关键词： Dermatology

Performance Analysis of a Modified Conjugate Gradient Algorithm for Optimization Models

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IOP Conference Series: Materials science and Engineering 2021年第1期1115卷

作者： S E Olowo I M Sulaiman M Mamat A E Owoyemi M A Zaini Kalfin S H Yuningsih Department of Mathematics Kano University of science and Technology Kano Nigeria Faculty of Informatics and Computing Universiti Sultan Zainal Abidin Campus Kuala Nerus 22200 Terengganu Malaysia Department of General Studies. Federal College of Agricultural Produce Technology Kano Nigeria Institute of Engineering Mathematics Universiti Malaysia Perlis Kangar Malaysia Doctor Program of Mathematics Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Indonesia Master Program of Mathematics Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Indonesia

The Conjugate gradient (CG) algorithms is very important and widely used in solving optimization models. This is due to its simplicity as well as global convergence properties. Various line search procedures as usually employ in the analysis of the CG methods. Recently, many studies have been done aimed at improving the CG method. In this paper, an alternative formula for conjugate gradient coefficient has been proposed which possesses the global convergence properties under exact minimization condition. The result of the numerical computation has shown that this new coefficient performs better than the existing CG methods.

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FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare

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arXiv 2023年

作者： Lekadir, Karim Feragen, Aasa Fofanah, Abdul Joseph Frangi, Alejandro F. Buyx, Alena Emelie, Anais Lara, Andrea Porras, Antonio R. Chan, An-Wen Navarro, Arcadi Glocker, Ben Botwe, Benard O. Khanal, Bishesh Beger, Brigit Wu, Carol C. Cintas, Celia Langlotz, Curtis P. Rueckert, Daniel Mzurikwao, Deogratias Fotiadis, Dimitrios I. Zhussupov, Doszhan Ferrante, Enzo Meijering, Erik Weicken, Eva González, Fabio A. Asselbergs, Folkert W. Prior, Fred Krestin, Gabriel P. Collins, Gary S. Tegenaw, Geletaw S. Kaissis, Georgios Misuraca, Gianluca Tsakou, Gianna Dwivedi, Girish Kondylakis, Haridimos Jayakody, Harsha Woodruf, Henry C. Mayer, Horst Joachim Aerts, Hugo JWL Walsh, Ian Chouvarda, Ioanna Buvat, Irène Tributsch, Isabell Rekik, Islem Duncan, James Kalpathy-Cramer, Jayashree Zahir, Jihad Park, Jinah Mongan, John Gichoya, Judy W. Schnabel, Julia A. Kushibar, Kaisar Riklund, Katrine Mori, Kensaku Marias, Kostas Amugongo, Lameck M. Fromont, Lauren A. Maier-Hein, Lena Alberich, Leonor Cerdá Rittner, Leticia Phiri, Lighton Marrakchi-Kacem, Linda Donoso-Bach, Lluís Martí-Bonmatí, Luis Cardoso, M. Jorge Bobowicz, Maciej Shabani, Mahsa Tsiknakis, Manolis Zuluaga, Maria A. Bielikova, Maria Fritzsche, Marie-Christine Camacho, Marina Linguraru, Marius George Wenzel, Markus De Bruijne, Marleen Tolsgaard, Martin G. Ghassemi, Marzyeh Ashrafuzzaman, Md Goisauf, Melanie Yaqub, Mohammad Abadía, Mónica Cano Mahmoud, Mukhtar M.E. Elattar, Mustafa Rieke, Nicola Papanikolaou, Nikolaos Lazrak, Noussair Díaz, Oliver Salvado, Olivier Pujol, Oriol Sall, Ousmane Guevara, Pamela Gordebeke, Peter Lambin, Philippe Brown, Pieta Abolmaesumi, Purang Dou, Qi Lu, Qinghua Osuala, Richard Nakasi, Rose Zhou, S. Kevin Napel, Sandy Colantonio, Sara Albarqouni, Shadi Joshi, Smriti Carter, Stacy Klein, Stefan Petersen, Steffen E. Aussó, Susanna Awate, Suyash Raviv, Tammy Riklin Cook, Tessa Mutsvangwa, Tinashe E.M. Rogers, Wendy A. Niessen, Wiro J. Puig-Bosch, Xènia Zeng, Yi Mohammed, Yunusa G. Aquino, Yves Saint James Salahuddin, Zohaib Starmans, Martijn P.A. Department de Matemàtiques i Informàtica Universitat de Barcelona Barcelona Spain Barcelona Spain DTU Compute Technical University of Denmark Kgs Lyngby Denmark Department of Mathematics and Computer Science Faculty of Science and Technology Milton Margai Technical University Freetown Sierra Leone Center for Computational Imaging & Simulation Technologies in Biomedicine Schools of Computing and Medicine University of Leeds Leeds United Kingdom Cardiovascular Science and Electronic Engineering Departments KU Leuven Leuven Belgium Institute of History and Ethics in Medicine Technical University of Munich Munich Germany Faculty of Engineering of Systems Informatics and Sciences of Computing Galileo University Guatemala City Guatemala Department of Biostatistics and Informatics Colorado School of Public Health University of Colorado Anschutz Medical Campus AuroraCO United States Department of Medicine Women’s College Research Institute University of Toronto Toronto Canada Universitat Pompeu Fabra BarcelonaBeta Brain Research Center Barcelona Spain Department of Computing Imperial College London London United Kingdom School of Biomedical & Allied Health Sciences University of Ghana Accra Ghana Department of Midwifery & Radiography School of Health & Psychological Sciences City University of London United Kingdom Kathmandu Nepal European Heart Network Brussels Belgium Department of Thoracic Imaging University of Texas MD Anderson Cancer Center Houston United States IBM Research Africa Nairobi Kenya Departments of Radiology Medicine and Biomedical Data Science Stanford University School of Medicine Stanford United States Institute for AI and Informatics in Medicine Klinikum rechts der Isar Technical University Munich Munich Germany Department of Computing Imperial College London London United Kingdom Muhimbili University of Health and Allied Sciences Dar es Salaam Tanzania United Republic of Ioannina Greece Almaty AI Lab Almaty Kazakhstan

Background: Despite major advances in artificial intelligence (AI) research for healthcare, the deployment and adoption of AI technologies remain limited in clinical practice. In recent years, concerns have been raised about the clinical, technical, ethical and legal risks associated with healthcare AI. To increase adoption in the real world, it is essential that AI technologies are trusted and accepted by patients, clinicians, health organisations and authorities. This paper describes the FUTURE-AI framework as the first international consensus guideline for trustworthy AI in healthcare. Methods: The FUTURE-AI consortium was founded in 2021 and now comprises 117 interdisciplinary experts from 50 countries representing all continents, including AI scientists, clinical researchers, biomedical ethicists, and social scientists. Over a two-year period, the consortium established guiding principles and best practices for trustworthy and deployable AI through an iterative process comprising an in-depth literature review, a modified Delphi survey, and online consensus meetings. Findings: The FUTURE-AI framework was established based on six guiding principles for trustworthy AI in healthcare, i.e. Fairness, Universality, Traceability, Usability, Robustness and Explainability. Through consensus, a set of 30 best practices were defined, addressing technical, clinical, socio-ethical and legal dimensions of trustworthy AI. The recommendations cover the entire lifecycle of healthcare AI, from design, development and validation to regulation, deployment, and monitoring. Interpretation: FUTURE-AI is a structured, risk-informed framework which provides guidance for constructing healthcare AI tools that will be trusted, deployed and adopted in real-world clinical practice. Researchers are encouraged to take the recommendations into account in proof-of-concept stages to facilitate future translation towards clinical practice of healthcare AI. Copyright © 2023, The Authors. All rights

关键词： Clinical research

How the world’s collective attention is being paid to a pandemic: COVID-19 related 1-gram time series for 24 languages on Twitter

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arXiv 2020年

作者： Alshaabi, Thayer Arnold, Michael V. Minot, Joshua R. Adams, Jane Lydia Dewhurst, David Rushing Reagan, Andrew J. Muhamad, Roby Danforth, Christopher M. Dodds, Peter Sheridan Computational Story Lab Vermont Complex Systems Center MassMutual Center of Excellence for Complex Systems and Data Science Vermont Advanced Computing Core University of Vermont BurlingtonVT05401 MassMutual Data Science AmherstMA01002 International Class Program Faculty of Social and Political Sciences University of Indonesia Jakarta Indonesia Department of Mathematics & Statistics University of Vermont BurlingtonVT05401 United States

In confronting the global spread of the coronavirus disease COVID-19 pandemic we must have coordinated medical, operational, and political responses. In all efforts, data is crucial. Fundamentally, and in the possible absence of a vaccine for 12 to 18 months, we need universal, well-documented testing for both the presence of the disease as well as confirmed recovery through serological tests for antibodies, and we need to track major socioeconomic indices. But we also need auxiliary data of all kinds, including data related to how populations are talking about the unfolding pandemic through news and stories. To in part help on the social media side, we curate a set of 1000 day-scale time series of 1-grams across 24 languages on Twitter that are most ‘important’ for March 2020 with respect to March 2019. We determine importance through our allotaxonometric instrument, rank-turbulence divergence. We make some basic observations about some of the time series, including a comparison to numbers of confirmed deaths due to COVID-19 over time. We broadly observe across all languages a peak for the language-specific word for ‘virus’ in January followed by a decline through February and a recent surge through March. The world’s collective attention dropped away while the virus spread out from China. We host the time series on Gitlab, updating them on a daily basis while relevant. Our main intent is for other researchers to use these time series to enhance whatever analyses that may be of use during the pandemic as well as for retrospective investigations. Copyright © 2020, The Authors. All rights reserved.

关键词： Time series

Nonuniform 3D finite difference elastic wave simulation on staggered grids

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arXiv 2020年

作者： Gao, Longfei Ghattas, Omar Keyes, David Oden Institute for Computational Engineering and Sciences The University of Texas at Austin AustinTX78712 United States Oden Institute for Computational Engineering and Sciences Jackson School of Geosciences Department of Mechanical Engineering The University of Texas at Austin AustinTX78712 United States Applied Mathematics and Computational Science Program Extreme Computing Research Center King Abdullah University of Science and Technology Thuwal23955-6900 Saudi Arabia

We present an approach to simulate the 3D isotropic elastic wave propagation using nonuniform finite difference discretization on staggered grids. Specifically, we consider simulation domains composed of layers of uniform grids with different grid spacings, separated by nonconforming interfaces. We demonstrate that this layer-wise finite difference discretization has the potential to significantly reduce the simulation cost, compared to its fully uniform counterpart. Stability of such a discretization is achieved by using specially designed difference operators, which are variants of the standard difference operators with adaptations near boundaries or interfaces, and penalty terms, which are appended to the discretized wave system to weakly impose boundary or interface conditions. Combined with specially designed interpolation operators, the discretized wave system is shown to preserve the energy conserving property of the continuous elastic wave equation, and a fortiori ensure the stability of the simulation. Numerical examples are presented to demonstrate the efficacy of the proposed simulation approach. © 2020, CC BY.

关键词： Elastic waves

Chemical Electron Tomography at Lower Dose and Higher Resolution

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Microscopy and Microanalysis 2024年第SUPPLEMENT_1期30卷

作者： Hovden, Robert Schwartz, Jonathan Sung, Suk Hyun Di, Zichao Wendy Jiang, Yi Manassa, Jason Pietryga, Jacob Qian, Yiwen Cho, Min Gee Rowell, Jonathan L Zheng, Huihuo Robinson, Richard D Gu, Junsi Kirilin, Alexey Rozeveld, Steve Ercius, Peter Scott, Mary Department of Materials Science and Engineering University of Michigan Ann Arbor MI Applied Physics Program University of Michigan Ann Arbor MI Chan Zuckerberg Initiative Redwood City CA Rowland Institute at Harvard Cambridge MA. Mathematics and Computer Science Division Argonne National Laboratory Lemont IL Advanced Photon Source Facility Argonne National Laboratory Lemont IL Department of Materials Science and Engineering U.C. Berkeley Berkeley CA National Center for Electron Microscopy Molecular Foundry Berkeley CA Department of Chemistry and Chemical Biology Cornell University Ithaca NY Argonne Leadership Computing Facility Argonne National Laboratory Lemont IL Dow Chemical Co. Terneuzen Netherlands Dow Chemical Co. Midland MI

Will artificial intelligence supersede earth system and climate models?

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arXiv 2021年

作者： Irrgang, Christopher Boers, Niklas Sonnewald, Maike Barnes, Elizabeth A. Kadow, Christopher Staneva, Joanna Saynisch-Wagner, Jan Helmholtz Centre Potsdam German Research Centre for Geosciences GFZ Potsdam Germany Department of Mathematics and Computer Science Free University of Berlin Germany Potsdam Institute for Climate Impact Research Potsdam Germany Department of Mathematics and Global Systems Institute University of Exeter United Kingdom Program in Atmospheric and Oceanic Sciences Princeton University PrincetonNJ08540 United States NOAA OAR Geophysical Fluid Dynamics Laboratory Ocean and Cryosphere Division PrincetonNJ08540 United States University of Washington School of Oceanography SeattleWA United States Colorado State University Fort Collins United States German Climate Computing Center DKRZ Hamburg Germany Helmholtz-Zentrum Geesthacht Center for Material and Coastal Research HZG Geesthacht Germany

We outline a perspective of an entirely new research branch in Earth and climate sciences, where deep neural networks and Earth system models are dismantled as individual methodological approaches and reassembled as learning, self-validating, and interpretable Earth system model-network hybrids. Following this path, we coin the term"Neural Earth System Modelling" (NESYM) and highlight the necessity of a transdisciplinary discussion platform, bringing together Earth and climate scientists, big data analysts, and AI experts. We examine the concurrent potential and pitfalls of Neural Earth System Modelling and discuss the open question whether artificial intelligence will not only infuse Earth system modelling, but ultimately render them obsolete. © 2021, CC BY.

关键词： Climate models

Experimental implementation of an efficient test of quantumness

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arXiv 2022年

作者： Lewis, Laura Zhu, Daiwei Gheorghiu, Alexandru Noel, Crystal Katz, Or Harraz, Bahaa Wang, Qingfeng Risinger, Andrew Feng, Lei Biswas, Debopriyo Egan, Laird Vidick, Thomas Cetina, Marko Monroe, Christopher Institute for Quantum Information and Matter Department of Computing and Mathematical Sciences California Institute of Technology CA91125 United States Division of Physics Mathematics and Astronomy California Institute of Technology CA91125 United States Joint Quantum Institute Departments of Physics and Electrical and Computer Engineering University of Maryland College ParkMD20742 United States Joint Center for Quantum Information and Computer Science NIST University of Maryland College ParkMD20742 United States IonQ Inc. College ParkMD20740 United States Departments of Electrical and Computer Engineering University of Maryland College ParkMD20742 United States Institute for Theoretical Studies ETH Zürich CH 8001 Switzerland Duke Quantum Center Department of Physics Duke University DurhamNC27708 United States Department of Electrical and Computer Engineering Duke University DurhamNC27708 United States Chemical Physics Program Institute for Physical Science and Technology University of Maryland College ParkMD20742 United States

A test of quantumness is a protocol where a classical user issues challenges to a quantum device to determine if it exhibits non-classical behavior, under certain cryptographic assumptions. Recent attempts to implement such tests on current quantum computers rely on either interactive challenges with efficient verification, or non-interactive challenges with inefficient (exponential time) verification. In this paper, we execute an efficient non-interactive test of quantumness on an ion-trap quantum computer. Our results significantly exceed the bound for a classical device’s success. Copyright © 2022, The Authors. All rights reserved.

关键词： Qubits

Detecting anomalous citation groups in journal networks

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arXiv 2020年

作者： Kojaku, Sadamori Livan, Giacomo Masuda, Naoki Luddy School of Informatics Computing and Engineering Indiana University BloomingtonIN47408 United States Department of Computer Science University College London LondonWC1E 6EA United Kingdom Systemic Risk Centre London School of Economics and Political Science LondonWC2A 2AE United Kingdom Department of Mathematics University at Buffalo State University of New York BuffaloNY United States Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York BuffaloNY14260-2900 United States Faculty of Science and Engineering Waseda University Tokyo169-8555 Japan

The ever-increasing competitiveness in the academic publishing market incentivizes journal editors to pursue higher impact factors. This translates into journals becoming more selective, and, ultimately, into higher publication standards. However, the fixation on higher impact factors leads some journals to artificially boost impact factors through the coordinated effort of a "citation cartel" of journals. "Citation cartel" behavior has become increasingly common in recent years, with several instances being reported. Here, we propose an algorithm—-named CIDRE—to detect anomalous groups of journals that exchange citations at excessively high rates when compared against a null model that accounts for scientific communities and journal size. CIDRE detects more than half of the journals suspended from Journal Citation Reports due to anomalous citation behavior in the year of suspension or in advance. Furthermore, CIDRE detects many new anomalous groups, where the impact factors of the member journals are lifted substantially higher by the citations from other member journals. We describe a number of such examples in detail and discuss the implications of our findings with regard to the current academic climate. Copyright © 2020, The Authors. All rights reserved.

关键词： Publishing