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arXiv 2023年

作者： Wang, Kunpeng Li, Chenglong Tu, Zhengzheng Liu, Zhengyi Luo, Bin Information Materials and Intelligent Sensing Laboratory of Anhui Province Anhui Provincial Key Laboratory of Multimodal Cognitive Computation School of Computer Science and Technology Anhui University Hefei230601 China Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Computer Science and Technology Anhui University Hefei China Anhui Provincial Key Laboratory of Multimodal Cognitive Computation School of Artificial Intelligence Anhui University Hefei230601 China The Institute of Physical Science and Information Technology Anhui University Hefei230601 China

Existing single-modal and multi-modal salient object detection (SOD) methods focus on designing specific architectures tailored for their respective tasks. However, developing completely different models for different tasks leads to labor and time consumption, as well as high computational and practical deployment costs. In this paper, we attempt to address both single-modal and multi-modal SOD in a unified framework called UniSOD, which fully exploits the overlapping prior knowledge between different tasks. Nevertheless, assigning appropriate strategies to modality variable inputs is challenging. To this end, UniSOD learns modality-aware prompts with task-specific hints through adaptive prompt learning, which are plugged into the proposed pre-trained baseline SOD model to handle corresponding tasks, while only requiring few learnable parameters compared to training the entire model. Each modality-aware prompt is generated from a switchable prompt generation block, which adaptively performs structural switching based on single-modal and multi-modal inputs without human intervention. Through end-to-end joint training, UniSOD achieves overall performance improvement on 14 benchmark datasets for RGB, RGB-D, and RGB-T SOD, which demonstrates that our method effectively and efficiently unifies single-modal and multi-modal SOD tasks. The code and results are available at https://***/Angknpng/UniSOD. Copyright © 2023, The Authors. All rights reserved.

关键词： Object detection

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Variational Clustering and Denoising of Spatial Transcriptomics

Variational Clustering and Denoising of Spatial Transcriptom...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Cuiyuan Li Fa Zhang Kai Hu Xuefeng Cui School of Computer Science and Technology Shandong University Qingdao China School of Medical Technology Beijing Institute of Technology Beijing China Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University Xiangtan China Key Laboratory of Medical Imaging and Artificial Intelligence of Hunan Province Xiangnan University Chenzhou China

Spatial transcriptomics data provides a unique opportunity to investigate both gene expression and spatial structure in tissues at the same time. However, incorporating spatial information to accurately identify spatial domains is difficult due to factors such as high-dimensionality, sparsity, noise, and dropout events. To address these issues, we introduce vGraphST, a novel graph-based deep learning approach tailored for spatial transcriptomics data. Our method combines auto-encoder and contrastive learning techniques to process high-dimensional data and generate meaningful low-dimensional embeddings. Additionally, we use continuous distributions instead of discrete values in both the latent space and the denoised gene expression space. Specifically, Gaussian distributions are used to model the latent space, while zero-inflated Poisson distributions are used to model the denoised gene expression space. Experimental results demonstrate the effectiveness of vGraphST in accurately representing and analyzing spatial transcriptomics data. When compared to other methods using the DLPFC dataset, vGraphST achieves an average Adjusted Rand Index (ARI) of 0.58, demonstrating its superiority in segmenting spatial domains and recognizing biologically relevant spatiotemporal patterns.

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Controlled-source electromagnetic noise attenuation via a deep convolutional neural network and high-quality sounding curve screening mechanism

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Geophysics 2025年第3期90卷 WA125-WA140页

作者： Liu, Yecheng Li, Diquan Li, Jin Zhang, Xian Central South University Monitoring Ministry of Education Key Laboratory of Metallogenic Prediction of Nonferrous Metals and Geological Environment Changsha China Hunan Provincial Key Laboratory of Non-ferrous Resources and Geological Hazard Detection Changsha China Central South University School of Geoscience and Info-physics Changsha China Hunan Normal University College of Information Science and Engineering Hunan Provincial Key Laboratory of Intelligent Computing and Language Information Processing Changsha China Hunan University of Finance and Economics School of Information Technology and Management Hunan Provincial Key Laboratory of Finance & Economics Big Data Science and Technology Changsha China

Strong noise is one of the biggest challenges in controlled-source electromagnetic (CSEM) exploration, which severely affects the quality of the recorded signal. We develop a novel and effective CSEM noise attenuation method that integrates a deep convolutional neural network (DCNN) with a high-quality sounding curve screening mechanism. This method first uses a DCNN to learn the large-scale noise characteristics of CSEM measured data and build a DCNN denoising model for attenuating the noise. Because some impulse noise remains after DCNN denoising, the high-quality sounding curve screening mechanism is innovatively applied to optimize the DCNN denoised data. The core of this method is the smoothness value (SV), which quantitatively evaluates the smoothness of the sounding curve (apparent resistivity curve). In effect, the mechanism segments the overall DCNN denoised data and calculates the corresponding sounding curve and its SV for each segment. The highest-quality sounding curve can be screened out by comparing the SVs of all curves as well as obtaining the highest-quality data segment present in the overall DCNN denoised data. Finally, our method is validated with synthetic and field data, demonstrating its feasibility and effectiveness in attenuating large-scale CSEM noise. The quality of CSEM data, which is heavily affected by noise, is significantly improved after processing by our method. © 2025 Society of Exploration Geophysicists. All rights reserved.

关键词： Deep neural networks

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Staggered Grid Scheme for the FFT-Based Methods

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Chinese Journal of Electronics 2019年第5期28卷 1066-1072页

作者： XIE Jiaye KONG Weibin PANG Lili SONG Weiju HUANG Zhixiang WU Xianliang Industrial Center Nanjing Institute of Technology State Key Laboratory of Millimeter Waves College of Information Engineering Yancheng Institute of Technology Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Anhui University

A staggered grid scheme is proposed to reduce both the total memory requirement and the CPU time of generating the corrected near matrix in the FFTbased methods. Two sets of Cartesian grids are used to project the source points and the field points, *** proposed method does not lower the efficiency of computing far matrix-vector products, compared with the traditional uniform Cartesian grid scheme. Some numerical experiments are provided to demonstrate both the correctness and the efficiency of the proposed method.

关键词： Green’s function Singularity RFG-FFT Staggered grid scheme Corrected near matrix

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CSCL-DTI: predicting drug-target interaction through cross-view and self-supervised contrastive learning

CSCL-DTI: predicting drug-target interaction through cross-v...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Xuan Lin Xi Zhang Zu-Guo Yu Yahui Long Xiangxiang Zeng Philip S. Yu College of Computer Science Xiangtan University China Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University China Singapore Immunology Network (SIgN) Agency for Science Technology and Research (A*STAR) Singapore College of Information Science and Engineering Hunan University China Department of Computer Science University of Illinois Chicago USA

ISBN: (数字)9798350386226

ISBN: (纸本)9798350386233

Accurately predicting drug-target interactions (DTI) is a critical step in drug discovery. Existing methods of DTI prediction primarily employ Simplified Molecular-Input Line-Entry System (SMILES) sequences or molecular graphs to learn drug representations. However, the features learned by such single-view approach is prone to incomplete. While some multiview methods that consider the views of both SMILES sequences and molecular graphs have been developed, these methods often fall in short in capturing potential interactions between views. In this work, we propose a novel dual contrastive learning framework CSCL-DTI for DTI prediction. First, we design a contrastive-enhanced cross-view representation learning (CVRL) to learn representations for drugs. In this module, Transformer-based and graph convolutional network (GCN)-based encoders are separately adopted to learn view-specific representations, followed by contrastive learning to enrich the representations by accounting for the potential interplay between local chemical context and topological structure. Second, we combine Transformer with self-supervised contrastive learning (SSCL) to learn representations for targets by modelling protein amino acids sequences. The scheme allows to effectively preserve the intrinsic characteristics of the sequences. Finally, we introduce a bilinear attention network to obtain an integrated representation by adaptively incorporating drug and target representations. Benchmarking experiments on two datasets demonstrated that CSCL-DTI 1 outperforms six state-of-the-art methods.

关键词： Drugs Proteins Representation learning Protein engineering Adaptation models Contrastive learning Predictive models Transformers Amino acids Diffusion tensor imaging

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NOBGP: A Novel Optimized Balanced Graph Partitioning Algorithm 19th

NOBGP: A Novel Optimized Balanced Graph Partitioning Algorit...

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19th CCF Conference on Computer Supported Cooperative Work and Social computing, ChineseCSCW 2024

作者： Chen, Jiebin Hu, Ziqiang Ye, Renjie Zhang, Qishan Guo, Kun College of Computer and Data Science Fuzhou University Fuzhou350108 China Engineering Research Center of Big Data Intelligence Ministry of Education Fuzhou350108 China Fujian Key Laboratory of Network Computing and Intelligent Information Processing Fuzhou University Fuzhou350108 China Xianda College of Economics and Humanities Shanghai International Studies University Shanghai China

ISBN: (纸本)9789819623723

Large-scale graphs have become prevalent with the advent of the big data era. Distributed graph computing systems are commonly used for processing and analyzing large-scale graphs, with graph partitioning being a key prerequisite for their efficient computation. Graph partitioning aims to balance the load across partitions while minimizing the number of cut-edges. Moreover, it should achieve high efficiency and scalability. However, the existing popular graph partitioning algorithms do not fully take into account the internal topology of real-world graphs, which affects the final partition quality and convergence. Meanwhile, they easily fall into the local optimum due to partition load constraints. This paper introduces a Novel Optimized Balanced Graph Partitioning algorithm (NOBGP). First, we propose an initialization strategy based on label propagation of core vertices to achieve initial partitions with good locality and accelerate convergence. Second, we optimize the label propagation process to ensure balanced partitions and propose a probability-based disruption strategy to avoid the local optimum. We implement NOBGP on the distributed graph computing framework GraphX. Extensive experimental results on real-world graphs show that the proposed algorithm is scalable and performs better than the existing algorithms. We also run PageRank and Louvain applications using the graph partitioning results to demonstrate the efficiency of our algorithm. © The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2025.

关键词： Graph algorithms

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Preference Multi-Objective Evolutionary Optimization Based on Angle Decompositio

SSRN

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SSRN 2023年

作者： Gao, Yubo Yu, Fan Zou, Juan Tang, Huanrong Zheng, Jinhua Key Laboratory of Intelligent Computing and Information Processing Ministry of Education Xiangtan University Xiangtan411105 China School of Computer Science School of Cyberspace Science University of Xiangtan Xiangtan411105 China School of Traffic and Transport Engineering Central South University Changsha410083 China

The optimal solution set of multi-objective optimization problems (MOPs) exists in a Pareto optimal front (PF) consisting of many Pareto non-dominated solutions. Still, the decision maker (DM) may be interested in only some of the solutions in the PF, called the region of interest (ROI). However, the existing strategies to determine the ROI for the DM are only limited to obtaining the preference region close to the preference point, which does not fully realize the essence of the preference multi-objective optimization problems (PMOPs), i.e., the solutions closer to the preference point should be more preferred by the DM. To better investigate the effectiveness of solving PMOPs, this paper proposes a preference multi-objective optimization evolutionary algorithm (PMOEA) based on the angle decomposition between objectives (MOEA/D-DAP) to avoid the challenge of preference information loss in PMOPs with increasing objective space dimension. Meanwhile, the reference vector generation method proposed by the MOEA/D-DAP enables preference solutions that align with the DM's needs to be closer to the preference points. Therefore, the preference solutions that are more in line with the needs of the DM exist closer to the preference points. Experiments on benchmark problems with dual and high dimensional objectives demonstrate the high effectiveness of the proposed MOEA/D-DAP in obtaining the ROI of the PMOPs. © 2023, The Authors. All rights reserved.

关键词： Multiobjective optimization

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Understanding the Robustness of 3D Object Detection with Bird’s-Eye-View Representations in Autonomous Driving

arXiv

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arXiv 2023年

作者： Zhu, Zijian Zhang, Yichi Chen, Hai Dong, Yinpeng Zhao, Shu Ding, Wenbo Zhong, Jiachen Zheng, Shibao Institute of Image Communication and Network Engineering Shanghai Jiao Tong University China Dept. of Comp. Sci. and Tech. Institute for AI THBI Lab BNRist Center Tsinghua University China Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education School of Computer Science and Technology Anhui University Information Materials and Intelligent Sensing Laboratory of Anhui Province China SAIC Motor AI Lab China Zhongguancun Laboratory China

3D object detection is an essential perception task in autonomous driving to understand the environments. The Bird’s-Eye-View (BEV) representations have significantly improved the performance of 3D detectors with camera inputs on popular benchmarks. However, there still lacks a systematic understanding of the robustness of these vision-dependent BEV models, which is closely related to the safety of autonomous driving systems. In this paper, we evaluate the natural and adversarial robustness of various representative models under extensive settings, to fully understand their behaviors influenced by explicit BEV features compared with those without BEV. In addition to the classic settings, we propose a 3D consistent patch attack by applying adversarial patches in the 3D space to guarantee the spatiotemporal consistency, which is more realistic for the scenario of autonomous driving. With substantial experiments, we draw several findings: 1) BEV models tend to be more stable than previous methods under different natural conditions and common corruptions due to the expressive spatial representations;2) BEV models are more vulnerable to adversarial noises, mainly caused by the redundant BEV features;3) Camera-LiDAR fusion models have superior performance under different settings with multi-modal inputs, but BEV fusion model is still vulnerable to adversarial noises of both point cloud and image. These findings alert the safety issue in the applications of BEV detectors and could facilitate the development of more robust models. Code available at https: //***/zzj403/BEV_Robust. Copyright © 2023, The Authors. All rights reserved.

关键词： Birds

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Interpretable multi-view attention network for drug-drug interaction prediction

Interpretable multi-view attention network for drug-drug int...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Xuan Lin Qi Wen Sijie Yang Zu-Guo Yu Yahui Long Xiangxiang Zeng College of Computer Science Xiangtan University China Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan University China Singapore Immunology Network (SIgN) Agency for Science Technology and Research(A*STAR) Singapore College of Information Science and Engineering Hunan University China

Drug-drug interaction (DDI) plays an increasingly crucial role in drug discovery. Predicting potential DDI is also essential for clinical research. Given the high cost and risk of wet-lab experiments, in-silico DDI prediction is an alternative choice. Recently, deep learning methods have been developed for DDI prediction. However, most of existing methods focus on feature extraction from either molecular SMILES sequences or drug interactive networks, ignoring the valuable complementary information that can be derived from these two views. In this paper, we propose a novel interpretable Multi-View Attention network (MVA-DDI) for DDI prediction. MVA-DDI can effectively extracts drug representations from different perspectives to improve DDI prediction. Specifically, for a given drug, we design a transformer-based encoder and a graph convolutional networkbased encoder to learn sequence and graph representations from SMILES sequence and molecular graph, respectively. To fully exploit the complementary information between the sequence and molecular views, an attention mechanism is further adopted to adaptively aggregate the sequence and graph representations by taking the importance of different views into accounts, generating the final drug representations. Comparison experiments demonstrated that our MVA-DDI 1 model achieved superior performance to state-of-the-art models on DDI prediction.

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Study of Novel Sparse Array Design Based on the Maximum Inter-Element Spacing Criterion

arXiv

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arXiv 2022年

作者： Shi, Wanlu Li, Yingsong de Lamare, Rodrigo C. The College of Information and Communication Engineering Harbin Engineering University Harbin150001 China The Key Laboratory of Intelligent Computing and Signal Processing Ministry of Education Anhui University Anhui Hefei China G¨¢vea Rio de Janeiro Brazil The University of York United Kingdom

A novel sparse array (SA) structure is proposed based on the maximum inter-element spacing (IES) constraint (MISC) criterion. Compared with the traditional MISC array, the proposed SA configurations, termed as improved MISC (IMISC) has significantly increased uniform degrees of freedom (uDOF) and reduced mutual coupling. In particular, the IMISC arrays are composed of six uniform linear arrays (ULAs), which can be determined by an IES set. The IES set is constrained by two parameters, namely the maximum IES and the number of sensors. The uDOF of the IMISC arrays is derived and the weight function of the IMISC arrays is analyzed as well. The proposed IMISC arrays have a great advantage in terms of uDOF against the existing SAs, while their mutual coupling remains at a low level. Simulations are carried out to demonstrate the advantages of the IMISC arrays. Copyright © 2022, The Authors. All rights reserved.

关键词： Degrees of freedom (mechanics)

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