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Grand−canonical Monte−Carlo simulation of DNA condensation in equilibrium with a salt mixture containing 2:2 salt

Journal of Physics: Conference Series 2017年第1期865卷

作者： Nguyen V Duc Toan T Nguyen Faculty of Physics VNU University of Science Vietnam National University 334 Nguyen Trai Street Thanh Xuan Hanoi Vietnam VNU Key Laboratory for Multiscale Simulation of Complex Systems Vietnam National University 334 Nguyen Trai Street Thanh Xuan Hanoi Vietnam School of Physics Georgia Institute of Technology 837 State Street Atlanta Georgia 30332-0430 USA

The Grand–canonical Monte–Carlo simulation method is used to simulate DNA hexagonal condensate in the presence of a mixture of 1:1, 2:1, 2:2 salts using the primitive ion model. Previous results show that DNA can be condensed by divalent counterions in restricted environment, such as inside viruses. In this work, we study the effects of divalent co-ions on condensation of DNA by divalent counterions. It is shown that divalent co–ions lead to weaker DNA condensation free energy and DNA de–condensation at smaller counterions concentration.

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Overview of the South China Sea Monsoon Experiment

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Advances in Atmospheric Sciences 2004年第3期21卷 343-360页

作者：丁一汇李崇银柳艳菊 National Climate Center China Meteorological Administration Beijing 100081 State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics Institute of Atmospheric Physics Chinese Academy of Sciences Beijing 100029 National Climate Center China Meteorological Administration Beijing 100081 State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid DynamicsInstitute of Atmospheric Physics Chinese Academy of Sciences Beijing 100029he present paper gives an overview of the key project " South China Sea Monsoon Experiment (SCSMEX)" operated by the Ministry of Science and Technology of China during the period of 1996-2001. The SCSMEX is a joint atmospheric and oceanic field experiment which aims to better understand the onset maintenance and variability of the summer monsoon over the South China Sea (SCS). It is a large-scale international effort with many participating countries and regions cooperatively involved in this experiment. With the field observation in May-August 1998 a large amount of meteorological and oceanic data was acquired which provides excellent datasets for the study of the SCS monsoon and the East Asian monsoon and their interaction with the ocean. The preliminary research achievements are as follows. (1) The earliest onset of the Asian monsoon over the SCS and Indo-China Peninsula has been well documented. Prom the viewpoint of the synoptic process its onset is closely related to the early rapid development of a twin cyclone to the east of Sri Lanka. The conceptual modei of the SCS monsoon onset in 1998 was put forward. The 50-year time series of the SCS monsoon onset date was also made. (2) Two major modes namely the 30-60-day and 10-20-day oscillations were ascertained. The influences of the abnormal SCS monsoon on the precipitation over eastern China and its modes were identifled. A strong (weak) monsoon over the SCS usually leads to less (more) precipitation over the middle and lower reaches of the Yangtze River

The present paper gives an overview of the key project ' South China Sea Monsoon Experiment (SCSMEX)' operated by the Ministry of Science and Technology of China during the period of 1996-2001. The SCSMEX is a joint atmospheric and oceanic field experiment which aims to better understand the onset, maintenance, and variability of the summer monsoon over the South China Sea (SCS). It is a large-scale international effort with many participating countries and regions cooperatively involved in this experiment. With the field observation in May-August 1998, a large amount of meteorological and oceanic data was acquired, which provides excellent datasets for the study of the SCS monsoon and the East Asian monsoon and their interaction with the ocean. The preliminary research achievements are as follows. (1) The earliest onset of the Asian monsoon over the SCS and Indo-China Peninsula has been well documented. Prom the viewpoint of the synoptic process, its onset is closely related to the early rapid development of a twin cyclone to the east of Sri Lanka. The conceptual modei of the SCS monsoon onset in 1998 was put forward. The 50-year time series of the SCS monsoon onset date was also made. (2) Two major modes, namely the 30-60-day and 10-20-day oscillations were ascertained. The influences of the abnormal SCS monsoon on the precipitation over eastern China and its modes were identifled. A strong (weak) monsoon over the SCS usually leads to less (more) precipitation over the middle and lower reaches of the Yangtze River basin, and more (less) precipitation in North China. (3) During the monsoon onset over the SCS, a wide variety of organized mesoscale convective systems (MCSs) were observed by a Doppler radar array deployed over the northern SCS. The relationship between large-scale circulations and MCSs during the monsoon onset process in 1998 was clearly revealed. It was suggested that there is a kind of positive feedback mechanism between large-scale circulations and

关键词： field experiment South China Sea monsoon low frequency oscillation (LFO) meso scale convective systems (MSCs) air-sea interaction numerical simulation

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The relationship between rising temperatures and malaria incidence in Hainan, China, from 1984 to 2010: a longitudinal cohort study

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The Lancet Planetary Health 2022年第4期6卷 e350-e358页

作者： Wang, Zengmiao Liu, Yonghong Li, Yapin Wang, Guangze Lourenço, José Kraemer, Moritz He, Qixin Cazelles, Bernard Li, Yidan Wang, Ruixue Gao, Dongqi Li, Yuchun Song, Wenjing Sun, Dingwei Dong, Lu Pybus, Oliver G Stenseth, Nils Chr Tian, Huaiyu State Key Laboratory of Remote Sensing Science Center for Global Change and Public Health College of Global Change and Earth System Science Beijing Normal University Beijing China Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering College of Life Sciences Beijing Normal University Beijing China School of National Security and Emergency Management Beijing Normal University Beijing China Central Theater Center for Disease Control and Prevention of PLA Beijing China Hainan Center for Disease Control and Prevention Haikou China Department of Zoology University of Oxford UK Oxford United Kingdom Harvard Medical School Harvard University Boston MA United States Boston Children's Hospital Boston MA United States Department of Ecology and Evolution University of Chicago Chicago IL United States Institut de Biologie de l’École Normale Supérieure Unité Mixte de Recherche 8197 Centre National de la Recherche Scientifique et École Normale Supérieure Paris France Unité Mixte Internationnale 209 Mathematical and Computational Modeling of Complex Systems Institut de Recherche pour le Développement et Sorbonne Université Bondy France Centre for Ecological and Evolutionary Synthesis Department of Biosciences University of Oslo Oslo Norway Biosystems and Integrative Sciences Institute University of Lisbon Lisbon Portugal Department of Pathobiology and Population Science The Royal Veterinary College UK London United Kingdom

Background: The influence of rising global temperatures on malaria dynamics and distribution remains controversial, especially in central highland regions. We aimed to address this subject by studying the spatiotemporal heterogeneity of malaria and the effect of climate change on malaria transmission over 27 years in Hainan, an island province in China. Methods: For this longitudinal cohort study, we used a decades-long dataset of malaria incidence reports from Hainan, China, to investigate the pattern of malaria transmission in Hainan relative to temperature and the incidence at increasing altitudes. Climatic data were obtained from the local meteorological stations in Hainan during 1984–2010 and the WorldClim dataset. A temperature-dependent R₀ model and negative binomial generalised linear model were used to decipher the relationship between climate factors and malaria incidence in the tropical region. Findings: Over the past few decades, the annual peak incidence has appeared earlier in the central highland regions but later in low-altitude regions in Hainan, China. Results from the temperature-dependent model showed that these long-term changes of incidence peak timing are linked to rising temperatures (of about 1·5°C). Further, a 1°C increase corresponds to a change in cases of malaria from –5·6% (95% CI –4·5 to –6·6) to –9·2% (95% CI –7·6 to –10·9) from the northern plain regions to the central highland regions during the rainy season. In the dry season, the change in cases would be 4·6% (95% CI 3·7 to 5·5) to 11·9% (95% CI 9·8 to 14·2) from low-altitude areas to high-altitude areas. Interpretation: Our study empirically supports the idea that increasing temperatures can generate opposing effects on malaria dynamics for lowland and highland regions. This should be further investigated and incorporated into future modelling, disease burden calculations, and malaria control, with attention for central highland regions under climate change. Funding: S

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Correction: Impact of ligand fields on Kubas interaction of open copper sites in MOFs with hydrogen molecules: an electronic structural insight

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RSC advances 2024年第44期14卷 32471页

作者： Trang Thuy Nguyen Hoan Van Tran Linh Hoang Nguyen Hoang Minh Nguyen Thang Bach Phan Toan Nguyen-The Yoshiyuki Kawazoe Faculty of Physics University of Science Vietnam National University Hanoi Vietnam nguyenthuytrang@hus.edu.vn. Key Laboratory for Multiscale Simulation of Complex Systems University of Science Vietnam National University Hanoi Vietnam. School of Engineering Physics Hanoi University of Science and Technology Hanoi Vietnam. Center for Innovative Materials and Architectures Vietnam National University Ho Chi Minh City Vietnam. Vietnam National University Ho Chi Minh City Vietnam. New Industry Creation Hatchery Center Tohoku University Sendai 980-8579 Japan. Department of Physics and Nanotechnology SRM Institute of Science and Technology Kattankulathur 603203 Tamilnadu India. School of Physics Institute of Science Suranaree University of Technology 111 University Avenue Nakhon Ratchasima 30000 Thailand.

[This corrects the article DOI: 10.1039/D4RA03946G.].

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25th Annual Computational Neuroscience Meeting CNS-2016, Seogwipo City, South Korea, July 2-7, 2016 Abstracts

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BMC NEUROSCIENCE 2016年第1期17卷 1-112页

作者： [Anonymous] Computational Neurobiology Laboratory The Salk Institute for Biological Studies San Diego USA UNIC CNRS Gif sur Yvette France The European Institute for Theoretical Neuroscience (EITN) Paris France ATR Computational Neuroscience Laboratories Kyoto Japan Krembil Research Institute University Health Network Toronto Canada Department of Physiology University of Toronto Toronto Canada Department of Medicine (Neurology) University of Toronto Toronto Canada Department of Physics University of New Hampshire Durham USA Department of Neurophysiology Nencki Institute of Experimental Biology Warsaw Poland Department of Theory Wigner Research Centre for Physics of the Hungarian Academy of Sciences Budapest Hungary Department of Mathematical Sciences KAIST Daejoen Republic of Korea Department of Mathematics University of Houston Houston USA Department of Biochemistry & Cell Biology and Institute of Biosciences and Bioengineering Rice University Houston USA Department of Biology and Biochemistry University of Houston Houston USA Grupo de Neurocomputación Biológica Dpto. de Ingeniería Informática Escuela Politécnica Superior Universidad Autónoma de Madrid Madrid Spain Department of Biological Sciences University of Southern California Los Angeles USA Center for Neuroscience Korea Institute of Science and Technology Seoul South Korea Department of Neurology Albert Einstein College of Medicine Bronx USA Center for Neuroscience KIST Seoul South Korea Department of Neuroscience University of Science and Technology Daejon South Korea Systems Neuroscience Group QIMR Berghofer Medical Research Institute Herston Australia Department of Psychology Yonsei University Seoul South Korea Department of Psychiatry Kyung Hee University Hospital at Gangdong Seoul South Korea Department of Psychiatry Veterans Administration Boston Healthcare System and Harvard Medical School Brockton USA Department of Electrical and Electronic Engineering The University of Melbourne Parkvil

A1 Functional advantages of cell-type heterogeneity in neural circuits Tatyana O. Sharpee A2 Mesoscopic modeling of propagating waves in visual cortex Alain Destexhe A3 Dynamics and biomarkers of mental disorders Mitsuo Kawato F1 Precise recruitment of spiking output at theta frequencies requires dendritic h-channels in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons Vladislav Sekulić, Frances K. Skinner F2 Kernel methods in reconstruction of current sources from extracellular potentials for single cells and the whole brains Daniel K. Wójcik, Chaitanya Chintaluri, Dorottya Cserpán, Zoltán Somogyvári F3 The synchronized periods depend on intracellular transcriptional repression mechanisms in circadian clocks. Jae Kyoung Kim, Zachary P. Kilpatrick, Matthew R. Bennett, Kresimir Josić O1 Assessing irregularity and coordination of spiking-bursting rhythms in central pattern generators Irene Elices, David Arroyo, Rafael Levi, Francisco B. Rodriguez, Pablo Varona O2 Regulation of top-down processing by cortically-projecting parvalbumin positive neurons in basal forebrain Eunjin Hwang, Bowon Kim, Hio-Been Han, Tae Kim, James T. McKenna, Ritchie E. Brown, Robert W. McCarley, Jee Hyun Choi O3 modeling auditory stream segregation, build-up and bistability James Rankin, Pamela Osborn Popp, John Rinzel O4 Strong competition between tonotopic neural ensembles explains pitch-related dynamics of auditory cortex evoked fields Alejandro Tabas, André Rupp, Emili Balaguer-Ballester O5 A simple model of retinal response to multi-electrode stimulation Matias I. Maturana, David B. Grayden, Shaun L. Cloherty, Tatiana Kameneva, Michael R. Ibbotson, Hamish Meffin O6 Noise correlations in V4 area correlate with behavioral performance in visual discrimination task Veronika Koren, Timm Lochmann, Valentin Dragoi, Klaus Obermayer O7 Input-location dependent gain modulation in cerebellar nucleus neurons Maria Psarrou, Maria Schilstra, Neil Davey, Benjamin Torben-Ni

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Author Correction: Malaria elimination on Hainan Island despite climate change

Communications Medicine

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Communications Medicine 2022年第1期2卷 1页

作者： Huaiyu Tian Naizhe Li Yonghong Liu Yidan Li Ben Wang Peiyi Wu Yapin Li Dongqi Gao Wenjing Song Moritz U. G. Kraemer José Lourenço Oliver G. Pybus Christopher Dye Hua Tan Bernard Cazelles Dingwei Sun Yuchun Li Guangze Wang State Key Laboratory of Remote Sensing Science Center for Global Change and Public Health College of Global Change and Earth System Science Beijing Normal University Beijing China Central Theater Center for Disease Control and Prevention of PLA Beijing China Department of Zoology University of Oxford Oxford UK Department of Pathobiology and Population Science The Royal Veterinary College London UK Oxford Martin School University of Oxford Oxford UK School of Biomedical Informatics the University of Texas Health Science Center at Houston Houston TX USA Institut de Biologie de l’École Normale Supérieure Unité Mixte de Recherche Centre National de la Recherche Scientifique et École Normale Supérieure Paris France Unité Mixte Internationnale Mathematical and Computational Modeling of Complex Systems Institut de Recherche pour le Développement et Sorbonne Université Bondy France Hainan Center for Disease Control and Prevention Haikou China

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26th Annual Computational Neuroscience Meeting (CNS*2017) of the Organization for Computational Neuroscience Antwerp, Belgium, July 15-20, 2017

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BMC NEUROSCIENCE 2017年第SUPPL 1期18卷 59-59页

作者： [Anonymous] Indiana University Purdue University Indianapolis Indianapolis IN 46032 USA Stark Neurosciences Research Institute Indiana University School of Medicine Indianapolis IN 46032 USA Department of Mathematics East Carolina University Greenville NC 27858 USA Jülich Supercomputing Centre Forschungszentrum Jülich 52425 Jülich Germany Future Systems Swiss National Supercomputing Centre 8092 Zurich Switzerland User Engagement and Support Swiss National Supercomputing Centre 6900 Lugano Switzerland Institut de Neurosciences des Systèmes Aix Marseille Univ 13005 Marseille France Simulation Lab Neuroscience Forschungszentrum Jülich Jülich Germany Department of Experimental Psychology Ghent University 9000 Ghent Belgium Donders Center for Cognitive Neuroimaging Radboud University 6525HR Nijmegen The Netherlands Department of Electrical Computer and Energy Engineering University of Colorado Boulder CO 80309 USA Department of Neurosurgery Johns Hopkins School of Medicine Baltimore MD 21287 USA Department of Neurology Johns Hopkins School of Medicine Baltimore MD 21287 USA Department of Otolaryngology Johns Hopkins School of Medicine Baltimore MD 21287 USA INSERM U968 Paris France Sorbonne Universités UPMC University Paris 06 UMR_S 968 Institut de la Vision Paris France CNRS UMR_7210 Paris France Department of Computer Architecture and Technology University of Granada (CITIC) Granada Spain Sorbonne Universités UPMC Univ Paris 06 INSERM CNRS Institut de la Vision Paris France Department of Adaptive Machine Systems Osaka University Osaka Japan Department of Computer Science University of Cergy-Pontoise Cergy-Pontoise France Department of Physics and Astronomy College of Charleston Charleston SC 29424 USA School of Physics Faculty of Science University of Sydney Sydney NSW 2006 Australia Center of Excellence for Integrative Brain Function Australian Research Council Sydney Australia Max Planck Institute for Human Cognitive and Brain Sciences Saxony Lei

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26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 Antwerp, Belgium. 15-20 July 2017 Abstracts

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BMC NEUROSCIENCE 2017年第SUPPL 1期18卷 95-176页

作者： [Anonymous] Department of Neuroscience Yale University New Haven CT 06520 USA Department Physiology & Pharmacology SUNY Downstate Brooklyn NY 11203 USA NYU School of Engineering 6 MetroTech Center Brooklyn NY 11201 USA Departament de Matemàtica Aplicada Universitat Politècnica de Catalunya Barcelona 08028 Spain Institut de Neurobiologie de la Méditerrannée (INMED) INSERM UMR901 Aix-Marseille Univ Marseille France Center of Neural Science New York University New York NY USA Aix-Marseille Univ INSERM INS Inst Neurosci Syst Marseille France Laboratoire de Physique Théorique et Modélisation CNRS UMR 8089 Université de Cergy-Pontoise 95300 Cergy-Pontoise Cedex France Department of Mathematics and Computer Science ENSAT Abdelmalek Essaadi’s University Tangier Morocco Laboratory of Natural Computation Department of Information and Electrical Engineering and Applied Mathematics University of Salerno 84084 Fisciano SA Italy Department of Medicine University of Salerno 84083 Lancusi SA Italy Dipartimento di Fisica Università degli Studi Aldo Moro Bari and INFN Sezione Di Bari Italy Data Analysis Department Ghent University Ghent Belgium Coma Science Group University of Liège Liège Belgium Cruces Hospital and Ikerbasque Research Center Bilbao Spain BIOtech Department of Industrial Engineering University of Trento and IRCS-PAT FBK 38010 Trento Italy Department of Data Analysis Ghent University Ghent 9000 Belgium The Wellcome Trust Centre for Neuroimaging University College London London WC1N 3BG UK Department of Electronic Engineering NED University of Engineering and Technology Karachi Pakistan Blue Brain Project École Polytechnique Fédérale de Lausanne Lausanne Switzerland Departement of Mathematics Swansea University Swansea Wales UK Laboratory for Topology and Neuroscience at the Brain Mind Institute École polytechnique fédérale de Lausanne Lausanne Switzerland Institute of Mathematics University of Aberdeen Aberdeen Scotland UK Department of Integrativ

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