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INNSE: Invertible neural network-based DNA image storage with self-correction encoding

Computational and Structural Biotechnology Journal 2025年 27卷 2492-2502页

作者： Yanfen Zheng Xiaokang Zhang Lijun Sun Ben Cao Bin Wang Qiang Zhang Pan Zheng School of Computer Science and Technology Dalian University of Technology Dalian Liaoning 116024 China The Key Laboratory of Advanced Design and Intelligent Computing Ministry of Education School of Software Engineering Dalian University Dalian Liaoning 116622 China Department of Accounting and Information Systems University of Canterbury Upper Riccarton Christchurch 8140 New Zealand

DNA storage has become an alternative to silicon-based storage of media. However, when used to store multimodal data such as images, it fails to take full advantage of the characteristics of high correlation and variability present in such data, and currently remains inferior in terms of encoding density and time complexity. It also has the shortcoming of weak performance in terms of error correction methods to address insertion and deletion errors caused by error crosstalk. Therefore, we proposed an invertible neural network-based DNA image storage self-correction encoding method (INNSE) that uses the invertibility of network to perform up-down sampling processing on image and video data, thereby greatly reducing the number of DNA sequences required for data storage. A codebook generator was then designed to encode low-dimensional vectors into DNA sequences that meet various constraints. Finally, a self-correction method was constructed to achieve DNA sequence error correction at the base level without adding any redundant information. Our experimental results showed that, compared to the Yin-Yang algorithm, the encoding density of INNSE was increased by 3×, encoding time complexity was reduced by 95.26%. Under a simulated error rate of 2%, PSNR and SSIM were raised by 80.88% and 63.82%, respectively, proving that INNSE has significant advantages in encoding performance and error correction ability.

关键词： Codebook generator DNA storage Invertible neural network Self-correction

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Continual Reinforcement Learning for Digital Twin Synchronization Optimization

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IEEE Transactions on Mobile computing 2025年

作者： Tong, Haonan Chen, Mingzhe Zhao, Jun Hu, Ye Yang, Zhaohui Liu, Yuchen Yin, Changchuan Beijing University of Posts and Telecommunications Beijing Key Laboratory of Network System Architecture and Convergence Beijing Advanced Information Network Laboratory Beijing China College of Computing and Data Science Singapore University of Miami Department of Electrical and Computer Engineering Frost Institute for Data Science and Computing Coral Gables33146 United States University of Miami Department of Industrial and Systems Engineering Coral Gables33146 United States Zhejiang University College of Information Science and Electronic Engineering Hangzhou310027 China North Carolina State University Department of Computer Science RaleighNC27695 United States Beijing Key Laboratory of Network System Architecture and Convergence China Beijing University of Posts and Telecommunications Beijing Advanced Information Network Laboratory Beijing100876 China

This article investigates the adaptive resource allocation scheme for digital twin (DT) synchronization optimization over dynamic wireless networks. In our considered model, a base station (BS) continuously collects factory physical object state data from wireless devices to build a real-time virtual DT system for factory event analysis. Due to continuous data transmission, maintaining DT synchronization must use extensive wireless resources. To address this issue, a subset of devices is selected to transmit their sensing data, and resource block (RB) allocation is optimized. This problem is formulated as a constrained Markov process (CMDP) problem that minimizes the long-term mismatch between the physical and virtual systems. To solve this CMDP, we first transform the problem into a dual problem that refines RB constraint impacts on device scheduling strategies. We then propose a continual reinforcement learning (CRL) algorithm to solve the dual problem. The CRL algorithm learns a stable policy across historical experiences for quick adaptation to dynamics in physical states and network capacity. Simulation results show that the CRL can adapt quickly to network capacity changes and reduce normalized root mean square error (NRMSE) between physical and virtual states by up to 55.2%, using the same RB number as traditional methods. © 2025 IEEE. All rights reserved.

关键词： Markov processes

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St-Keys: Self-Supervised Transformer for Keyword Spotting in Historical Handwritten Documents

SSRN

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SSRN 2023年

作者： Jemni, Sana Khamekhem Ammar, Sourour Souibgui, Mohamed Ali Kessentini, Yousri Cheddad, Abbas Digital Research Center of Sfax B.P. 275 Sakiet Ezzit Sfax3021 Tunisia SM@RTS: Laboratory of Signals systeMs aRtificial Intelligence and neTworkS MIR@CL: Multimedia InfoRmation systems and Advanced Computing Laboratory Computer Vision Center Computer Science Department Universitat Aut`onoma de Barcelona Spain Department of Computer Science Blekinge Institute of Technology Karlskrona Sweden

Keyword spotting (KWS) in historical documents is an important tool for the initial exploration of digitized collections. Nowadays, the most efficient KWS methods are relying on machine learning techniques that require a large amount of annotated training data. However, in the case of historical manuscripts, there is a lack of annotated corpus for training. To handle the data scarcity issue, we investigate the merits of the self-supervised learning to extract useful representations of the input data without relying on human annotations and then using these representations in the downstream task. We propose ST-KeyS, a masked auto-encoder model based on vision transformers where the pretraining stage is based on the mask-and-predict paradigm, without the need of labeled data. In the fine-tuning stage, the pre-trained encoder is integrated into a siamese neural network model that is fine-tuned to improve feature embedding from the input images. We further improve the image representation using pyramidal histogram of characters (PHOC) embedding to create and exploit an intermediate representation of images based on text attributes. In an exhaustive experimental evaluationon three widely used benchmark datasets (Botany, Alvermann Konzilsprotokolle and George Washington), the proposed approach outperforms state-of-the-art methods trained on the same datasets. © 2023, The Authors. All rights reserved.

关键词： Embeddings

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ST-KeyS: Self-Supervised Transformer for Keyword Spotting in Historical Handwritten Documents

arXiv

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arXiv 2023年

作者： Jemni, Sana Khamekhem Ammar, Sourour Souibgui, Mohamed Ali Kessentini, Yousri Cheddad, Abbas Digital Research Center of Sfax B.P. 275 Sakiet Ezzit Sfax3021 Tunisia Laboratory of Signals systems Artificial Intelligence and networks Sfax Tunisia Multimedia Information systems and Advanced Computing Laboratory Tunisia Computer Vision Center Computer Science Department Universitat Autònoma de Barcelona Spain Department of Computer Science Blekinge Institute of Technology Karlskrona Sweden

Keyword spotting (KWS) in historical documents is an important tool for the initial exploration of digitized collections. Nowadays, the most efficient KWS methods are relying on machine learning techniques that require a large amount of annotated training data. However, in the case of historical manuscripts, there is a lack of annotated corpus for training. To handle the data scarcity issue, we investigate the merits of the self-supervised learning to extract useful representations of the input data without relying on human annotations and then using these representations in the downstream task. We propose ST-KeyS, a masked auto-encoder model based on vision transformers where the pretraining stage is based on the mask-and-predict paradigm, without the need of labeled data. In the fine-tuning stage, the pre-trained encoder is integrated into a siamese neural network model that is fine-tuned to improve feature embedding from the input images. We further improve the image representation using pyramidal histogram of characters (PHOC) embedding to create and exploit an intermediate representation of images based on text attributes. In an exhaustive experimental evaluation on three widely used benchmark datasets (Botany, Alvermann Konzilsprotokolle and George Washington), the proposed approach outperforms state-of-the-art methods trained on the same datasets. © 2023, CC BY.

关键词： Image enhancement

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A Two-Stage Enhancement Method for Object Detection on Low-Resolution Images

A Two-Stage Enhancement Method for Object Detection on Low-R...

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International Joint Conference on Neural Networks (IJCNN)

作者： Zijian Yuan Mingyang Ling Kan Chang Mengyu Yin Minghong Li Boning Chen School of Computer and Electronic Information Guangxi University Nanning China School of Electrical Engineering Guangxi University Nanning China Guangxi Key Laboratory of Multimedia Communications and Network Technology Guangxi University Nanning China School of Automation Central South University Changsha China School of Computing and Information Systems The University of Melbourne Melbourne Australia

ISBN: (数字)9798350359312

ISBN: (纸本)9798350359329

Detecting objects on low-resolution (LR) images is a challenging task, as small structures and details contained in LR images are insufficient. To improve the detection accuracy on LR images, a two-stage enhancement framework is proposed in this paper. In the first stage, a lightweight image super-resolution (SR) sub-network is built by incorporating the external guidance obtained by the detection backbone, so that the potential discriminant features can be well preserved. Moreover, to alleviate the hardship of directly learning a nonlinear mapping from the LR space to the high-resolution (HR) space, an auxiliary module which maps the SR results back to the degraded LR images provides additional constraint. In the second stage, the multi-scale features produced by the detection heads are further enhanced by the lightweight feature adaptation modules, which aim to further bridge the gap between the SR result and the corresponding HR image. During training, the detector is kept frozen in our framework, leading to a flexible plug-and-play mechanism. Experiments demonstrate that our approach achieves better performance on LR images than many state-of-the-art methods. To facilitate further study, our source code will be available at: https://***/Zijian-Yuan/TSE-YOLO.

关键词： Training Upper bound Head Accuracy Source coding Superresolution Detectors

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Family of Mutually Uncorrelated Codes for DNA Storage Address Design

IEEE Transactions on Nanobioscience

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IEEE Transactions on Nanobioscience 2025年 PP卷 PP页

作者： Liu, Zhenlu Cao, Ben Shao, Qi Zheng, Yanfen Wang, Bin Zhou, Shihua Zheng, Pan Dalian University Key Laboratory of Advanced Design and Intelligent Computing Ministry of Education School of Software Engineering Dalian116622 China Dalian University of Technology School of Computer Science and Technology Dalian116024 China University of Canterbury Upper Riccarton Department of Accounting and Information Systems Christchurch8140 New Zealand

Deoxyribonucleic acid (DNA) has become an ideal medium for long-term storage and retrieval due to its extremely high storage density and long-term stability. But access efficiency is an existing bottleneck in DNA storage, especially the lack of high-quality random access address sequences. Therefore, in this paper, we report a series of approaches based on k-weakly mutually uncorrelated (k-WMU) codes to design the address sequence to improve the access efficiency of DNA storage. To address the problem of DNA sequences that are poorly scalable at the base level, we propose a 0-m-ruling coding scheme combined with k-WMU codes that can make address sequences avoid generating secondary structure with stem lengths ranging from 3 to 9. Based on the decoupled structure, We further extend the k-WMU codes with error correction function while satisfying combinatorial biological constraints. In order to investigate the performance of the designed address sequences for real-world applications, we perform simulation experiments based on thermodynamic properties and error correction capability as well as compared the minimum free energy (MFE), melting temperature (TM), and average decoding success rate (ADSR) with previous work. The results show that designed address sequences have a high MFE value and ADSR and a substantial reduction in TM-variance while satisfying the combinatorial biological constraints. As the quality of address sequences improves, this will help to achieve accurate random access as well as enhance the robustness of the DNA storage system. © 2002-2011 IEEE.

关键词： DNA sequences

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Intelligent Prediction-Intervention approach to Support Students' Success in Web-based Learning Environments: A Case Study in Higher Education

Intelligent Prediction-Intervention approach to Support Stud...

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2022 IEEE/WIC/ACM International Joint Conference on Web Intelligence and Intelligent Agent Technology (WI-IAT)

作者： Tesnim Khelifi Nourhène Ben Rabah Ibtissem Daoudi Bénédicte Le Grand Farah Barika Ktata Centre de Recherche en Informatique Université Paris 1 Panthéon Sorbonne Paris France ESIEE-IT France LA Recherche en Intelligence Artificielle ENSI University of Manouba Tunisia Multimedia InfoRmation Systems and Advanced Computing Laboratory

Due to the COVID-19 pandemic, the demand for distance learning has significantly increased in higher education institutions. This type of learning is usually supported by Web-based learning systems such as Massive Open Online Courses (Coursera, edX, etc.) and Learning Management systems (Moodle, Blackboard-Learn, etc.). However, in this remote context, students often lack feedback and support from educational staff, especially when they face difficulties or challenges. For that reason, this work presents a Prediction-Intervention approach that (a) predicts students who present difficulties during an online learning course, based on two main learning indicators, namely engagement and performance rates, and (b) offers immediate support to students, tailored to the problem they are facing. To predict students’ issues, our approach considers ten machine learning algorithms of different types (standalone, ensemble, and deep learning) which are compared to determine the best performing ones. It has been experimented with a dataset collected from the Blackboard-Learn platform utilized in an engineering school called ESIEE-IT in France during 2021-2022 academic year, showing thus quite promising results.

关键词： Deep learning COVID-19 Learning management systems Machine learning algorithms Electronic learning Pandemics Education

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Hot Spot Locating and Optimization of Calculation Errors in Arithmetic Expressions 7

Hot Spot Locating and Optimization of Calculation Errors in ...

引用

7th International Symposium on Advances in Electrical, Electronics, and Computer Engineering

作者： Jinchen, Xu Yuanyuan, Xia Jiangwei, Hao Hao, Cao State Key Laboratory of Mathematical Engineering and Advanced Computing No. 62 Science Avenue High-Tech Zone Henan Zhengzhou450001 China National Key Laboratory of Science and Technology on Integrated Information Systems Technology Institute of Software Chinese Academy of Sciences No. 4 Zhongguancun South Fourth Street Haidian District Beijing10190 China

ISBN: (纸本)9781510656437

Error analysis is an important support for improving the precision of floating-point calculations. However, the floating-point error distribution does not have dominant characteristics, making it difficult to optimize floating-point calculation precision. This paper proposes the LFEE (Locating hot spots of floating-point expression errors) algorithm. The algorithm analyzes the error detection result of the expression to obtain the error hot spot, i.e., the step with the maximum error in the expression calculation sequence, followed by preforming precision optimization scheme for the error hot spot. The experimental results show that the LFEE algorithm can accurately locate the error hot spots and improve the accuracy of the function by optimizing the error hot spots. © 2022 SPIE. All rights reserved.

关键词： Error detection

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A survey on hand gesture recognition for mobile devices

A survey on hand gesture recognition for mobile devices

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作者： Lahiani, Houssem Neji, Mahmoud National School of Electronics and Telecommunications University of Sfax Tunisia Tunisia Multimedia Information Systems and Advanced Computing Laboratory Faculty of Economics and Management University of Sfax Sfax Tunisia

As smartphones and mobile devices become ubiquitous in the daily life of human beings, facilitating interaction with them will have a positive impact on their use. This paper presents an emerging and important area for research on human-machine interaction, involving interaction with mobile devices. Hand gesture recognition is already a quite mature field and its integration on advanced technologies like smartphones makes a survey an interesting and needed contribution. The design of interactive mobile applications should differ from traditional desktop applications. For this purpose, the paper discusses some concepts that help to understand new challenges and introduces techniques that may be useful to properly exploit these devices. This paper gives also an overview of recent works done on vision-based and contact-based hand gesture recognition systems for mobile devices. Used techniques and approaches are also discussed. At the end, we conclude with some reflections. Copyright © 2020 Inderscience Enterprises Ltd.

关键词： Palmprint recognition

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Two-mode squeezing over deployed fiber coexisting with conventional communications

arXiv

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arXiv 2023年

作者： Chapman, Joseph C. Miloshevsky, Alexander Lu, Hsuan-Hao Rao, Nageswara Alshowkan, Muneer Peters, Nicholas A. Quantum Information Science Section Oak Ridge National Laboratory Oak RidgeTN37831 United States Advanced Computing Methods for Engineered Systems Section Oak Ridge National Laboratory Oak RidgeTN37831 United States

Squeezed light is a crucial resource for continuous-variable (CV) quantum information science. Distributed multi-mode squeezing is critical for enabling CV quantum networks and distributed quantum sensing. To date, multi-mode squeezing measured by homodyne detection has been limited to single-room experiments without coexisting classical signals, i.e., on "dark" fiber. Here, after distribution through separate fiber spools (5 km), −0.9±0.1-dB coexistent two-mode squeezing is measured. Moreover, after distribution through separate deployed campus fibers (about 250 m and 1.2 km), −0.5 ± 0.1-dB coexistent two-mode squeezing is measured. Prior to distribution, the squeezed modes are each frequency multiplexed with several classical signals-including the local oscillator and conventional network signals-demonstrating that the squeezed modes do not need dedicated dark fiber. After distribution, joint two-mode squeezing is measured and recorded for post-processing using triggered homodyne detection in separate locations. This demonstration enables future applications in quantum networks and quantum sensing that rely on distributed multi-mode squeezing. Copyright © 2023, The Authors. All rights reserved.

关键词： Fibers

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